|
Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00062741 ID=TCONS_00062741|Name=TCONS_00062741|organism=Clytia hemisphaerica|type=transcript|length=5563bpRun BLAST on NCBI transcript from alignment at scaffold_371:361305..380753- Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00062741 ID=TCONS_00062741|Name=TCONS_00062741|organism=Clytia hemisphaerica|type=transcript|length=19449bp|location=Sequence derived from alignment at scaffold_371:361305..380753- (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Blast
BLAST of TCONS_00062741 vs. Swiss-Prot (Human)
Match: KDM5A (Lysine-specific demethylase 5A OS=Homo sapiens GN=KDM5A PE=1 SV=3) HSP 1 Score: 916.761 bits (2368), Expect = 0.000e+0 Identity = 460/972 (47.33%), Postives = 641/972 (65.95%), Query Frame = 3
Query: 3 EGGFEDVTRLRRWTRVAALMNYT-APATSGILRRHYEKILYPYDIFMSG-AMIGGDTPTEKSTTSMSKQEMKQMKNDPEYKPNGDDDVMETSSIHTRLSRNKQLEDEGIEEDCKIDYTKNPELRKLQFSAPGPKIAG------------RRNKKVSDKYNAKDYETNLQKGGKNVNRFNFHSFIDDYKCRVCENGDDEDCMLLCDQCDASYHTFCLIPPLAGIPPGDWRCPKCVAKECNKPLETYGFEQAKKIYTLEDFSEMADKFKEDYFSMPPTEVPVRVVEKEFWKLVSSIDHDISVEYAADLHTADHGSGFPT-EKNSGVFSDTSEYIXXXXXXXXXXXXEKSVLKYITQDISGMKVPWIYVGMCFSSFCWHTEDHWSYSINFHHWGEPKTWYGVPQSEAERLESCVKEIAPELFERNPDLFHHLVTLCSPMTLMKHGVPVFRTNQYPGEFVVTFPRAYHAGFNTGYNCAEAVNFCPAEWLPSGQECVKHYQKMRRVTVFSHDELLFKMASIPDALELDLAKKLYDCMRDVVDAEIDARHRMSRLGIMDKQREAYELINDDERQCDYCKTTIFLSGVACACDKKRLTCLNHWDKPCGCGSSKKYIRFRYTLRELPKILADLKKRADSFDNWEIAVHKVLSKTDATKIEFTALKDYITEAEESQFPECELLDQLRVYVSEAEQCSQVANQLLTKKHKTRKT-STGPTPSSPRLTLNELRDFVNQIDNLPCIIKEAAAIDKLMAQVESFRYDAKLVLNSDDYNEKKVLELLEHAETMDVDLPEINDLRLDLKASKWLESIDEILNQEDPISLDVIRSCVDQGIGLRKKQASEKPLSRLKELLYAADRWEEKAKLCLQAKPRHMVGTLEVIVQEASKVKIILPNVSALKDALFKAKDWTSKVERVHNDQYYPYYDILEALVVKGRPIPVRLEQLPQMESQVAAARAWKDRTSRTFVKKASNKLLMELLQPR 2870
+GGFE VT+ ++W++V + + Y T +L+ HYE+ILYPY++F SG +++G P + K E + + D + P + + + R R K + G D ++N EL+KLQ GPK+ G R +KV+++ +A + + +KG +VN F+D Y C C G++ED +LLCD CD SYHTFCLIPPL +P GDWRCPKCVA+EC+KP E +GFEQA + YTL+ F EMAD FK DYF+MP VP +VEKEFW+LVSSI+ D+ VEY AD+ + D GSGFP + + + EY S WNLNN P E+SVL +I DISGMKVPW+YVGMCFSSFCWH EDHWSYSIN+ HWGEPKTWYGVP AE+LE ++E+APELFE PDL H LVT+ +P LM+HGVPV+RTNQ GEFVVTFPRAYH+GFN GYN AEAVNFC A+WLP G++CV HY+++RR VFSH+EL+FKMA+ P+ L++ LA + + + + E R + ++G++ + E +EL+ DDERQC C+TT FLS + C+C+ +RL CL H C C KK +R+RY L +LP +L +K RA S+D W V + LS K + L+ + +AE+ ++PE +L +LR V EAE C+ VA LL+KK K R++ +G T + +LT+ EL+ FV Q+ +LPC+I +A + L+ VE F A+ + + + K+ L++ ++ V+LPE+ L+ +L+ ++WL+ + L+ ++LDV++ +D G+GL A EK ++ L+ELL ++RWEEKAK+CLQA+PRH V +LE IV EA + LPNV +LK+AL KA++WT+KVE + + Y Y + LE+L KGRPIPVRLE LPQ+ESQVAAARAW++RT RTF+KK S+ L+++L PR
Sbjct: 127 KGGFEMVTKEKKWSKVGSRLGYLPGKGTGSLLKSHYERILYPYELFQSGVSLMGVQMP---NLDLKEKVEPEVLSTDTQTSPEPGTRM---NILPKRTRRVKTQSESG-------DVSRNTELKKLQIFGAGPKVVGLAMGTKDKEDEVTRRRKVTNRSDAFNMQMRQRKGTLSVN------FVDLYVCMFCGRGNNEDKLLLCDGCDDSYHTFCLIPPLPDVPKGDWRCPKCVAEECSKPREAFGFEQAVREYTLQSFGEMADNFKSDYFNMPVHMVPTELVEKEFWRLVSSIEEDVIVEYGADISSKDFGSGFPVKDGRRKILPEEEEYALSGWNLNNMPVLEQSVLAHINVDISGMKVPWLYVGMCFSSFCWHIEDHWSYSINYLHWGEPKTWYGVPSHAAEQLEEVMRELAPELFESQPDLLHQLVTIMNPNVLMEHGVPVYRTNQCAGEFVVTFPRAYHSGFNQGYNFAEAVNFCTADWLPIGRQCVNHYRRLRRHCVFSHEELIFKMAADPECLDVGLAAMVCKELTLMTEEETRLRESVVQMGVLMSEEEVFELVPDDERQCSACRTTCFLSALTCSCNPERLVCLYHPTDLCPCPMQKKCLRYRYPLEDLPSLLYGVKVRAQSYDTWVSRVTEALSANFNHKKDLIELRVMLEDAEDRKYPENDLFRKLRDAVKEAETCASVAQLLLSKKQKHRQSPDSGRTRT--KLTVEELKAFVQQLFSLPCVISQARQVKNLLDDVEEFHERAQEAMMDETPDSSKLQMLIDMGSSLYVELPELPRLKQELQQARWLDEVRLTLSDPQQVTLDVMKKLIDSGVGLAPHHAVEKAMAELQELLTVSERWEEKAKVCLQARPRHSVASLESIVNEAKNIPAFLPNVLSLKEALQKAREWTAKVEAIQSGSNYAYLEQLESLSAKGRPIPVRLEALPQVESQVAAARAWRERTGRTFLKKNSSHTLLQVLSPR 1077 HSP 2 Score: 149.443 bits (376), Expect = 1.023e-35 Identity = 87/195 (44.62%), Postives = 119/195 (61.03%), Query Frame = 3
Query: 3177 DPLTVAQNLKDDEVIELAAMKELREKN--KQKLVEENIEGPYCLCRKGIDGFMIRCNLCFNWYHTSCICPPKTVYGKPIGKGYNSWTATREVHYLCTQCCRSRRPRLDNILQLLMSLQKLPVRVPEGEALQFLTERAMNWQDRAKQALSNPEISRIITE------------AKAQVEKILAEKQLLSSANTNHNG 3719
D V K+ E E+ AM LR N K +V+ E +C+CRK GFM++C LC +W+H SC+ PK+ K +SW A +EV +LC C RSRRPRL+ IL LL+SLQKLPVR+PEGEALQ LTERAM+WQDRA+QAL+ E+S + + A+ + EKI++ + ++AN + G
Sbjct: 1122 DTAMVVAVFKEREQKEIEAMHSLRAANLAKMTMVDRIEEVKFCICRKTASGFMLQCELCKDWFHNSCVPLPKSSSQK----KGSSWQA-KEVKFLCPLCMRSRRPRLETILSLLVSLQKLPVRLPEGEALQCLTERAMSWQDRARQALATDELSSALAKLSVLSQRMVEQAAREKTEKIISAELQKAAANPDLQG 1311 The following BLAST results are available for this feature:
BLAST of TCONS_00062741 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
|
Copyright © 2024, MARIMBA.