Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00062772 ID=TCONS_00062772|Name=TCONS_00062772|organism=Clytia hemisphaerica|type=transcript|length=2271bp AATCGAGAGAGTCTGGATTCTTACACAAATACACTAATCTGATCTCAAGA CATTttgtttgttgtctttttagGTATGAACAGAAGAAGATTGAGTGTCC TGTTTTAAAGGAGAACTTATTTCTCCCCTTCCTCTGATGGGATCTCAATC TCTCCTATATGCAAAACAATGAATGGAATTGTTTGGTGAAATGCACGGAG GGTTGATGAAGGAATGAAGTCTGGTGATCGATATTCCCAAATGAAATGCA AGATATGATTGGACAAATCAAATACATATCAGTTCAAAAGGGAGGTTATC GCCATGTGAAGACAACAAGTCTTCTCTTGGTCAATGAATTactaaatgaa tgaatgaatgaaacaAGCGTTCCCATCTTCATGTTACATGGATGTTGAGT GGACGTTGTTTGAACGTACTGTGCGttggattttttgttttgtcttcCCA TTGCTAAGGGAGATTACTGAAAACTGCCAGAGAAAGAAAAGATTAAGGAA AGAACACCACAGAGGAATGAGAAGATTAAATCACTTTAACAAGCAGtgac aatttcacaattttccTCCTAACTTATGCCTGCTTGtgtgttattttttt taaatgaaaggAATATTTTTCCTGCAGCTATTGATTAGCAATACAATGAA CTTAAATCTAACTAAAAGGAAACTGTGCTCTATATTATTAGTATTAGAGT GTTCAAAACCCTTTTTTCCTCATAGGGGATGATAATTTCCCCTCACTACT GTGTTTGTATATAGTAAcccgtatttttttttttaagttcacCACAATTG CACCATAGATGAACAAGTGTCTTATTTTAAAACCTACCTATCAAATCACA AGActaatttttcttgagtttTTTCAGCGTGTTTTAAGATTAGCTGAATT AGATTTTCGCAATTTTCAGTTAATtctaaaatttcaactttttgactAAC AAGCTTTCAAAGTTCAAATATTTAGTAAAACTTTGCAAAGGCTGTAACTA AGAAGGTGCACGACGCTCACTCCCCTTATAtagattttttaaaagcatCG TTTTTATGTAATATTGTAACTTGCAAAAGCAAAATGCGTGCAATGGTTTG GAAGTTTTCAGGGCTGCGTAAAATATCTGTTGAATCTGTTAATATGCTTT TGAGTTTGGACACGTccttttttctttggaaattcGTTAACGacttttaa gtgaaaaaattttctttccactATCCATAACAATAAAAATGAAGTGCTTG TAAAAAAAACTTCATTCCAGTAAAAGTGGACGAGCTATGGATATTTTGGA TTAATTTTccgaaataaaacttttcagtttaacttttttgagtttttaac aCAGTGTCCTCGAAGAGAGTTAGGCCAGCTTCCATCTCAGGCATTTTGCG TCGTCACAGCAACGGCATCAACCATTTCTAAAAACTACTCCAATCACAAT CTTgtacaaaatttaagaaaaccaaattttaattgagaaatgatatattt tatttttgtatttataCTATACCAAATTTTTTCGTTTGTctgtctgtttg tttttttaactgataAATCTACACTTTATAATCAAAGATTTTAAGTCAAT GCTGGCTGTTCAAAGAATATGCGAATCAATCTTTTTCATATCATATAAGC ATTCTTAGGCTTAGAATTGGGTCTGAAAGAACAACTTTTGTGCTATGCTA ATTGCTACAAAAAATTGTCTAACAAATCAATCATCAATCATGACATTAca gaaaattgatttgtttGAATGTACATTATTCTTTGAACACGCTttatttt tcccaaatttttatAGTTTATGTTAGGAAGGATATATATTGATCCGTAAG AGCTTTACCAGGCCCCCCTTCTTGCTTGAGCTGCTTTGACCTACCTTCTT ACGGccattttttgttgttgttttcccTCTCTGAACAAGACATCTTCCCC TATATTCCTTTaatctttgcttgtttttttttctatattagAATTTTTTA GTATTAATAATTTTATTAGCAAGCAGTTGCACACAACTCGCCCTTTAACG ATATGAAAATGCcaagaatttttttatacaaaCTTGACATCTGCTTGGTT TAACTGATCAGAACAAGGTGTTGTAAAAAAACTTCATGGTATCTGTCATG CTAAAAATGTCCATTGTTAAATCCTAAAATCAtttgtaataataataatt atgatATTATTTGAGAAAGAGAAAATCTCAATTAAAGTCATGTGACAGGT TcacaatgacgtcatgaaaTG Run BLAST on NCBI transcript from alignment at scaffold_371:286960..289230 Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00062772 ID=TCONS_00062772|Name=TCONS_00062772|organism=Clytia hemisphaerica|type=transcript|length=2271bp|location=Sequence derived from alignment at scaffold_371:286960..289230 (Clytia hemisphaerica) CAtttcatgacgtcattgtgAACCTGTCACATGACTTTAATTGAGATTTT
CTCTTTCTCAAATAATatcataattattattattacaaaTGATTTTAGGA
TTTAACAATGGACATTTTTAGCATGACAGATACCATGAAGTTTTTTTACA
ACACCTTGTTCTGATCAGTTAAACCAAGCAGATGTCAAGtttgtataaaa
aaattcttgGCATTTTCATATCGTTAAAGGGCGAGTTGTGTGCAACTGCT
TGCTAATAAAATTATTAATACTAAAAAATTctaatatagaaaaaaaaaca
agcaaagattAAAGGAATATAGGGGAAGATGTCTTGTTCAGAGAgggaaa
acaacaacaaaaaatggCCGTAAGAAGGTAGGTCAAAGCAGCTCAAGCAA
GAAGGGGGGCCTGGTAAAGCTCTTACGGATCAATATATATCCTTCCTAAC
ATAAACTataaaaatttgggaaaaataaAGCGTGTTCAAAGAATAATGTA
CATTCaaacaaatcaattttctgTAATGTCATGATTGATGATTGATTTGT
TAGACAATTTTTTGTAGCAATTAGCATAGCACAAAAGTTGTTCTTTCAGA
CCCAATTCTAAGCCTAAGAATGCTTATATGATATGAAAAAGATTGATTCG
CATATTCTTTGAACAGCCAGCATTGACTTAAAATCTTTGATTATAAAGTG
TAGATTtatcagttaaaaaaacaaacagacagACAAACGAAAAAATTTGG
TATAGtataaatacaaaaataaaatatatcatttctcaattaaaatttgg
ttttcttaaattttgtacAAGATTGTGATTGGAGTAGTTTTTAGAAATGG
TTGATGCCGTTGCTGTGACGACGCAAAATGCCTGAGATGGAAGCTGGCCT
AACTCTCTTCGAGGACACTGtgttaaaaactcaaaaaagttaaactgaaa
agttttatttcggAAAATTAATCCAAAATATCCATAGCTCGTCCACTTTT
ACTGGAATGAAGTTTTTTTTACAAGCACTTCATTTTTATTGTTATGGATa
gtggaaagaaaattttttcacttaaaagtCGTTAACgaatttccaaagaa
aaaaggACGTGTCCAAACTCAAAAGCATATTAACAGATTCAACAGATATT
TTACGCAGCCCTGAAAACTTCCAAACCATTGCACGCATTTTGCTTTTGCA
AGTTACAATATTACATAAAAACGatgcttttaaaaaatctaTATAAGGGG
AGTGAGCGTCGTGCACCTTCTTAGTTACAGCCTTTGCAAAGTTTTACTAA
ATATTTGAACTTTGAAAGCTTGTTagtcaaaaagttgaaattttagaATT
AACTGAAAATTGCGAAAATCTAATTCAGCTAATCTTAAAACACGCTGAAA
aaactcaagaaaaattagTCTTGTGATTTGATAGGTAGGTTTTAAAATAA
GACACTTGTTCATCTATGGTGCAATTGTGgtgaacttaaaaaaaaaaata
cgggTTACTATATACAAACACAGTAGTGAGGGGAAATTATCATCCCCTAT
GAGGAAAAAAGGGTTTTGAACACTCTAATACTAATAATATAGAGCACAGT
TTCCTTTTAGTTAGATTTAAGTTCATTGTATTGCTAATCAATAGCTGCAG
GAAAAATATTcctttcatttaaaaaaaataacacaCAAGCAGGCATAAGT
TAGGAggaaaattgtgaaattgtcaCTGCTTGTTAAAGTGATTTAATCTT
CTCATTCCTCTGTGGTGTTCTTTCCTTAATCTTTTCTTTCTCTGGCAGTT
TTCAGTAATCTCCCTTAGCAATGGgaagacaaaacaaaaaatccaaCGCA
CAGTACGTTCAAACAACGTCCACTCAACATCCATGTAACATGAAGATGGG
AACGCTtgtttcattcattcattcatttagtAATTCATTGACCAAGAGAA
GACTTGTTGTCTTCACATGGCGATAACCTCCCTTTTGAACTGATATGTAT
TTGATTTGTCCAATCATATCTTGCATTTCATTTGGGAATATCGATCACCA
GACTTCATTCCTTCATCAACCCTCCGTGCATTTCACCAAACAATTCCATT
CATTGTTTTGCATATAGGAGAGATTGAGATCCCATCAGAGGAAGGGGAGA
AATAAGTTCTCCTTTAAAACAGGACACTCAATCTTCTTCTGTTCATACct
aaaaagacaacaaacaaAATGTCTTGAGATCAGATTAGTGTATTTGTGTA
AGAATCCAGACTCTCTCGATT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
Feature Name | Unique Name | Species | Type |
TCONS_00062772-exon-scaffold_371-1491911889:286960..289230 | TCONS_00062772-exon-scaffold_371-1491911889:286960..289230 | Clytia hemisphaerica | exon |
TCONS_00062772-exon-scaffold_371-1510915933:286960..289230 | TCONS_00062772-exon-scaffold_371-1510915933:286960..289230 | Clytia hemisphaerica | exon |
TCONS_00062772-exon-scaffold_371-1575043694:286960..289230 | TCONS_00062772-exon-scaffold_371-1575043694:286960..289230 | Clytia hemisphaerica | exon |
Position
The following features are aligned
Aligned Feature | Feature Type | Alignment Location |
scaffold_371 | supercontig | scaffold_371:286960..289230 . |
Blast
The following BLAST results are available for this feature:
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