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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00062792 ID=TCONS_00062792|Name=TCONS_00062792|organism=Clytia hemisphaerica|type=transcript|length=1108bp
ATAATTATCATGCATGTAAAGATAAAGAATTTGGTGTCTATGATACTGTT
AGTAAAAACAACATCATAAACAAAACCGCCTTTGCTGAGATTGGGTTTTT
GAGTTGGAAGGgtgaaaaattgatttcaaatcaattcggAGAATTCAAAA
GGGGTATTAGTGGTTTTCAGGCGAAACGATCCACGAATGGTTTATTTGTA
CGAAAGAAAACTGGGAAATATTCGAGTGTTTCACTACTTTATCCTAAACC
TATGGGGTTTGAACAGATCAAAGGAGTAATTTATGGAGAAAGGTCAAGGT
GTGATAAATACAACATCTCATCTTTTCATCTGTTTCAAGGAAAGTCAAGA
CTCGTTAATCTCGATCTTAATCAATTCACCTTAGTCAATGCAACATCAAA
CTTCTGGGATTTGGACAACAtaatcaaattaaattcaaatcaaatcaatc
ttctTAACCAGTCAATTTCGAACCAGACTTTCCAATATCAATACTGGCGA
AAGAAACAATCAAATATTATTGGAAACTCAGACGAAGTAATTGATTTGGT
GACAAGGTCTGTAGAATATAAAGGGAATACATTTGGTGTGGCCAAAACAG
ATGCTTCTAATTATATCACACTGGTACCACTACTGTTTATTAAACGCTTT
GACCAGGATGGAACTGGTGGTGATGGATATTCAAAACTGGAATATCGTGT
TTACGAATATAACGAAGTTTTAAACCAAACTCAAACTGATATGATTAATA
AATTGACTAAAACATTCGATTGCAAAATATAATACACAGCAAGCTCGTAT
CCAGTTCCTTAGATCGCTTGTCTGATGATTCGGATAGTGTTAACAAAATG
TTTGTAAGACATCCATcagtaaatcaaaaataatgcaAGTGTCACTGGGT
ACGGGATTGGATACACAGTACAGTTGAGATATAAAATtcaaatacagggt
gtccggaaaaaagtatCAAGCTcaaacatgattctgagtagaaggttttt
gcgtgtgtttaacaaaatgtaacaaatatataccaacacaataattgttt
ttacaacattCATTGTAAATTGATTAaaataattaactttttttacaatt
ttcatgac Run BLAST on NCBI protein sequence of TCONS_00062792-protein >TCONS_00062792-protein ID=TCONS_00062792-protein|Name=TCONS_00062792-protein|organism=Clytia hemisphaerica|type=polypeptide|length=259bp
NYHACKDKEFGVYDTVSKNNIINKTAFAEIGFLSWKGEKLISNQFGEFKR
GISGFQAKRSTNGLFVRKKTGKYSSVSLLYPKPMGFEQIKGVIYGERSRC
DKYNISSFHLFQGKSRLVNLDLNQFTLVNATSNFWDLDNIIKLNSNQINL
LNQSISNQTFQYQYWRKKQSNIIGNSDEVIDLVTRSVEYKGNTFGVAKTD
ASNYITLVPLLFIKRFDQDGTGGDGYSKLEYRVYEYNEVLNQTQTDMINK
LTKTFDCKI Run BLAST on NCBI transcript from alignment at scaffold_372:80314..82202+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00062792 ID=TCONS_00062792|Name=TCONS_00062792|organism=Clytia hemisphaerica|type=transcript|length=1889bp|location=Sequence derived from alignment at scaffold_372:80314..82202+ (Clytia hemisphaerica)
ATAATTATCATGCATGTAAAGATAAAGAATTTGGTGTCTATGATACTGTT
AGTAAAAACAACATCATAAACAAAACCGCCTTTGCTGAGATTGGGTTTTT
GAGTTGGAAGGgtgaaaaattgatttcaaatcaattcggAGAATTCAAAA
GGGGTATTAGTGGTTTTCAGGCGAAACGATCCACGAATGGTTTATTTGTA
CGAAAGAAAACTGGGAAATATTCGAGTGTTTCACTACTTTATCCTAAACC
TATGGGGTTTGAACAGGTAAATCCATCTGGTATTATGTTATGATTTTATA
TATATTCTCCTAGAGatgcaaaaaaactttcaattgtGTTGTGGGAAAAG
ATTTTGTTACTATACGCAGTTTTTATGATGATAAATGTTTTTTGTACAGC
tcgaatgaaattttcaatacaAGGTTTTTCGATACATCAATATCTTTTTA
TATAAGTTTAAAATCAACATAAATTTGCAATGGAGAAGCTAGACTTAGGt
aggtcggtttgaaaaatccatttCTCCGTTTTTCAATTCAGATCAAAGGA
GTAATTTATGGAGAAAGGTCAAGGTGTGATAAATACAACATCTCATCTTT
TCATCTGTTTCAAGGAAAGTCAAGACTCGTTAATCTCGGTAAGTTTATTC
ACTCACAGGATAAGAATCTAACTGTTTTAGACACTTTGGTAAGGTACAAA
TTTATTCCGGATTATAATTTCCAGCGTAGTGttttaaaatgaagaaaaaa
aaatagaccTTTCACAAATAACATCAACTTGCATCGAGTTCGAAGTAATT
TTATGACAACTTCTACCTAAAAGATTATTTCAATTGCGCAATATTTTTTA
TGTACCATAAatatcacagctcgaataaatatcGACCTCTGAAGACGAGG
TTTTTAtaatacaagatcttgtattaaAACGCTCGCAAAGTAGATATATT
TCAGCATTTGGCTTAGATGAGGCTTGTGAATCATGTTTGATTTGCTTTTT
TAGACAAGTGgtgagaaaatgaaaacttggcctctggtaCCCAGGGTACT
TTTTATTATCGTTTCAAATTGACGGAAGTGTTGGGTGATTTATCTCGAGA
AGTGTGTATTAGTTACAGTAATTTCATAAACCATTTTTCTCTAGATCTTA
ATCAATTCACCTTAGTCAATGCAACATCAAACTTCTGGGATTTGGACAAC
AtaatcaaattaaattcaaatcaaatcaatcttctTAACCAGTCAATTTC
GAACCAGACTTTCCAATATCAATACTGGCGAAAGAAACAATCAAATATTA
TTGGAAACTCAGACGAAGTAATTGATTTGGTGACAAGGTCTGTAGAATAT
AAAGGGAATACATTTGGTGTGGCCAAAACAGATGCTTCTAATTATATCAC
ACTGGTACCACTACTGTTTATTAAACGCTTTGACCAGGATGGAACTGGTG
GTGATGGATATTCAAAACTGGAATATCGTGTTTACGAATATAACGAAGTT
TTAAACCAAACTCAAACTGATATGATTAATAAATTGACTAAAACATTCGA
TTGCAAAATATAATACACAGCAAGCTCGTATCCAGTTCCTTAGATCGCTT
GTCTGATGATTCGGATAGTGTTAACAAAATGTTTGTAAGACATCCATcag
taaatcaaaaataatgcaAGTGTCACTGGGTACGGGATTGGATACACAGT
ACAGTTGAGATATAAAATtcaaatacagggtgtccggaaaaaagtatCAA
GCTcaaacatgattctgagtagaaggtttttgcgtgtgtttaacaaaatg
taacaaatatataccaacacaataattgtttttacaacattCATTGTAAA
TTGATTAaaataattaactttttttacaattttcatgac Coding sequence (CDS) from alignment at scaffold_372:80314..82202+ >TCONS_00062792 ID=TCONS_00062792|Name=TCONS_00062792|organism=Clytia hemisphaerica|type=CDS|length=2340bp|location=Sequence derived from alignment at scaffold_372:80314..82202+ (Clytia hemisphaerica)
AATTATCATGCATGTAAAGATAAAGAATTTGGTGTCTATGATACTGTTAG
TAAAAACAACATCATAAACAAAACCGCCTTTGCTGAGATTGGGTTTTTGA
GTTGGAAGGgtgaaaaattgatttcaaatcaattcggAGAATTCAAAAGG
GGTATTAGTGGTTTTCAGGCGAAACGATCCACGAATGGTTTATTTGTACG
AAAGAAAACTGGGAAATATTCGAGTGTTTCACTACTTTATCCTAAACCTA
TGGGGTTTGAACAGATCAAAGGAGTAATTTATGGAGAAAGGTCAAGGTGT
GATAAATACAACATCTCATCTTTTCATCTGTTTCAAGGAAAGTCAAGACT
CGTTAATCTCGATCTTAATCAATTCACCTTAGTCAATGCAACATCAAACT
TCTGGGATTTGGACAACAtaatcaaattaaattcaaatcaaatcaatctt
ctTAACCAGTCAATTTCGAACCAGACTTTCCAATATCAATACTGGCGAAA
GAAACAATCAAATATTATTGGAAACTCAGACGAAGTAATTGATTTGGTGA
CAAGGTCTGTAGAATATAAAGGGAATACATTTGGTGTGGCCAAAACAGAT
GCTTCTAATTATATCACACTGGTACCACTACTGTTTATTAAACGCTTTGA
CCAGGATGGAACTGGTGGTGATGGATATTCAAAACTGGAATATCGTGTTT
ACGAATATAACGAAGTTTTAAACCAAACTCAAACTGATATGATTAATAAA
TTGACTAAAACATTCGATTGCAAAATATAAAATTATCATGCATGTAAAGA
TAAAGAATTTGGTGTCTATGATACTGTTAGTAAAAACAACATCATAAACA
AAACCGCCTTTGCTGAGATTGGGTTTTTGAGTTGGAAGGgtgaaaaattg
atttcaaatcaattcggAGAATTCAAAAGGGGTATTAGTGGTTTTCAGGC
GAAACGATCCACGAATGGTTTATTTGTACGAAAGAAAACTGGGAAATATT
CGAGTGTTTCACTACTTTATCCTAAACCTATGGGGTTTGAACAGATCAAA
GGAGTAATTTATGGAGAAAGGTCAAGGTGTGATAAATACAACATCTCATC
TTTTCATCTGTTTCAAGGAAAGTCAAGACTCGTTAATCTCGATCTTAATC
AATTCACCTTAGTCAATGCAACATCAAACTTCTGGGATTTGGACAACAta
atcaaattaaattcaaatcaaatcaatcttctTAACCAGTCAATTTCGAA
CCAGACTTTCCAATATCAATACTGGCGAAAGAAACAATCAAATATTATTG
GAAACTCAGACGAAGTAATTGATTTGGTGACAAGGTCTGTAGAATATAAA
GGGAATACATTTGGTGTGGCCAAAACAGATGCTTCTAATTATATCACACT
GGTACCACTACTGTTTATTAAACGCTTTGACCAGGATGGAACTGGTGGTG
ATGGATATTCAAAACTGGAATATCGTGTTTACGAATATAACGAAGTTTTA
AACCAAACTCAAACTGATATGATTAATAAATTGACTAAAACATTCGATTG
CAAAATATAAAATTATCATGCATGTAAAGATAAAGAATTTGGTGTCTATG
ATACTGTTAGTAAAAACAACATCATAAACAAAACCGCCTTTGCTGAGATT
GGGTTTTTGAGTTGGAAGGgtgaaaaattgatttcaaatcaattcggAGA
ATTCAAAAGGGGTATTAGTGGTTTTCAGGCGAAACGATCCACGAATGGTT
TATTTGTACGAAAGAAAACTGGGAAATATTCGAGTGTTTCACTACTTTAT
CCTAAACCTATGGGGTTTGAACAGATCAAAGGAGTAATTTATGGAGAAAG
GTCAAGGTGTGATAAATACAACATCTCATCTTTTCATCTGTTTCAAGGAA
AGTCAAGACTCGTTAATCTCGATCTTAATCAATTCACCTTAGTCAATGCA
ACATCAAACTTCTGGGATTTGGACAACAtaatcaaattaaattcaaatca
aatcaatcttctTAACCAGTCAATTTCGAACCAGACTTTCCAATATCAAT
ACTGGCGAAAGAAACAATCAAATATTATTGGAAACTCAGACGAAGTAATT
GATTTGGTGACAAGGTCTGTAGAATATAAAGGGAATACATTTGGTGTGGC
CAAAACAGATGCTTCTAATTATATCACACTGGTACCACTACTGTTTATTA
AACGCTTTGACCAGGATGGAACTGGTGGTGATGGATATTCAAAACTGGAA
TATCGTGTTTACGAATATAACGAAGTTTTAAACCAAACTCAAACTGATAT
GATTAATAAATTGACTAAAACATTCGATTGCAAAATATAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00062792-exon-scaffold_372-1491911889:80314..80579 | TCONS_00062792-exon-scaffold_372-1491911889:80314..80579 | Clytia hemisphaerica | exon |
| TCONS_00062792-exon-scaffold_372-1510915933:80314..80579 | TCONS_00062792-exon-scaffold_372-1510915933:80314..80579 | Clytia hemisphaerica | exon |
| TCONS_00062792-exon-scaffold_372-1575043694:80314..80579 | TCONS_00062792-exon-scaffold_372-1575043694:80314..80579 | Clytia hemisphaerica | exon |
| TCONS_00062792-exon-scaffold_372-1491911889:80855..80951 | TCONS_00062792-exon-scaffold_372-1491911889:80855..80951 | Clytia hemisphaerica | exon |
| TCONS_00062792-exon-scaffold_372-1510915933:80855..80951 | TCONS_00062792-exon-scaffold_372-1510915933:80855..80951 | Clytia hemisphaerica | exon |
| TCONS_00062792-exon-scaffold_372-1575043694:80855..80951 | TCONS_00062792-exon-scaffold_372-1575043694:80855..80951 | Clytia hemisphaerica | exon |
| TCONS_00062792-exon-scaffold_372-1491911889:81458..82202 | TCONS_00062792-exon-scaffold_372-1491911889:81458..82202 | Clytia hemisphaerica | exon |
| TCONS_00062792-exon-scaffold_372-1510915933:81458..82202 | TCONS_00062792-exon-scaffold_372-1510915933:81458..82202 | Clytia hemisphaerica | exon |
| TCONS_00062792-exon-scaffold_372-1575043694:81458..82202 | TCONS_00062792-exon-scaffold_372-1575043694:81458..82202 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_372 | supercontig | scaffold_372:80314..82202 + |
Blast
The following BLAST results are available for this feature:
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