TCONS_00062803 (transcript) - C. hemisphaerica

Overview
NameTCONS_00062803
Unique NameTCONS_00062803
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1629

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00062803 ID=TCONS_00062803|Name=TCONS_00062803|organism=Clytia hemisphaerica|type=transcript|length=1629bp
GCCAAACTCTAAGAATTTATATTGAAGTGTATAAATAACCATTTTCGAAC
CAAGTCAATCGCTCTACAAAACCTATATACGAGAAAGAGAAATATTCATT
TGAAAATATATGATATGACCATATATAAATGGTGAAACAATGATAAATGT
GCATCGAGATGTGCAGCGAGTTATTTATAAAAGTATTATAATAGGTAAAG
AATAGTTAAATCAGCTAAAATCGTAGGTATTTGGTAGCTCACATCATGTA
TTAGAGTTCTACTGAGCTGTACAACTTTTGAAGAATCGAAAGAAGTCCTT
TTTGGTTACCGGGTGACAACCGCCGTACTGGACAAACTATAAGATTATGA
AGAAAccttattttattttgttgctGTGTATTACCATATTGGCATTTTAT
TTCATGTTTGAGTCATGGAATCAAGATATACTGGACAAAAAATCGATACT
CAACATTCAACCTTTACCGGTAGCAATTGAAGCTCAAGATTCTGTTACAG
AAATACTTAAAAGTAAAATCATTTTGACCgctaaagagaaaaaaaggaag
aatgtTCATTTTCTGTATGAGGATGAAAAGGCGTATATAAGTAAGACGCC
AACCGACAAAATTGTTTATCAACGTGCAGTAAACGATATGGCGTCCATTA
AAACAGATACCTTATCGAGTAGTCTGAACTCTTCatttatgaatttttca
aaaagcttaaACAATCGGAAAGTCAAGAAGAGTGTTCAAAATTTTACTGC
CAATATGAACATAAATGAAACAACAAACTCATCTTATCTTAATGATATCA
GCTTTAAAAATCAAACCCAACaaaaaaaaagctcaaaaacgaTACTAGTT
TATACAAGATATTCAGAATCGAAAATATGGCCAAGAATGAAACCAACGGA
CCTTGTGAAAGAGCTTGACGGTTCTTCATGCGGTAACAACATTTGTAGCT
TAACTTACAACAAGACAATGCTTTTGCAGAGTGATGCAGTGTTATTTCAC
GAGCCTTACCTACCTTCCAGCATATTACTGAAACATCTAAGAGCGGTTGT
TCCAGAATCGCAATTTTGGATATGGAATTTACGGGAGCCTCCGACGCATC
TTACAAAAGATTTAAGTcgatataataatattttcaattgGACTTGTACG
TATAGTCGAAAATCTGAAGTTTATGATCCTATTTTTCATATAGTCAGTAA
GGCGGTGAAGAAAACTTTGACAAGTCAAGATTTCTCTAAAGGGAGGACAA
AGATGATTTTTGCAGCAATTAATAATTGTTTTGGTGAGAGAGTTTTAATG
ATCAAACGATTAAAGAAATTGGTCTCGTTTGATGTTTATGGAgcatgtgg
aagaaaagttGGAGATGCCAACCTACCACCATGTCCAAGGTAAATAAAGA
AAGGATTTAAAACTCTTAGAAAACTATTAGAGCTTACTAAACACAGAGCA
GAGCAGCTAAACCAAAGCATTTCTCCAAACAATTCTCTTCATGAAACTGT
GAAAGTTTTAGATGAATACAAAATGGTAAAGTTGATCCTCGCTAATTCGA
ATGGGGATTCTTATTCGTTCGAACAACACAGGgagattcaaattatagaa
agtatttcaagTGGGGTTTCCCCCTATGC
Run BLAST on NCBI

transcript from alignment at scaffold_372:387491..389119+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00062803 ID=TCONS_00062803|Name=TCONS_00062803|organism=Clytia hemisphaerica|type=transcript|length=1629bp|location=Sequence derived from alignment at scaffold_372:387491..389119+ (Clytia hemisphaerica)
GCCAAACTCTAAGAATTTATATTGAAGTGTATAAATAACCATTTTCGAAC
CAAGTCAATCGCTCTACAAAACCTATATACGAGAAAGAGAAATATTCATT
TGAAAATATATGATATGACCATATATAAATGGTGAAACAATGATAAATGT
GCATCGAGATGTGCAGCGAGTTATTTATAAAAGTATTATAATAGGTAAAG
AATAGTTAAATCAGCTAAAATCGTAGGTATTTGGTAGCTCACATCATGTA
TTAGAGTTCTACTGAGCTGTACAACTTTTGAAGAATCGAAAGAAGTCCTT
TTTGGTTACCGGGTGACAACCGCCGTACTGGACAAACTATAAGATTATGA
AGAAAccttattttattttgttgctGTGTATTACCATATTGGCATTTTAT
TTCATGTTTGAGTCATGGAATCAAGATATACTGGACAAAAAATCGATACT
CAACATTCAACCTTTACCGGTAGCAATTGAAGCTCAAGATTCTGTTACAG
AAATACTTAAAAGTAAAATCATTTTGACCgctaaagagaaaaaaaggaag
aatgtTCATTTTCTGTATGAGGATGAAAAGGCGTATATAAGTAAGACGCC
AACCGACAAAATTGTTTATCAACGTGCAGTAAACGATATGGCGTCCATTA
AAACAGATACCTTATCGAGTAGTCTGAACTCTTCatttatgaatttttca
aaaagcttaaACAATCGGAAAGTCAAGAAGAGTGTTCAAAATTTTACTGC
CAATATGAACATAAATGAAACAACAAACTCATCTTATCTTAATGATATCA
GCTTTAAAAATCAAACCCAACaaaaaaaaagctcaaaaacgaTACTAGTT
TATACAAGATATTCAGAATCGAAAATATGGCCAAGAATGAAACCAACGGA
CCTTGTGAAAGAGCTTGACGGTTCTTCATGCGGTAACAACATTTGTAGCT
TAACTTACAACAAGACAATGCTTTTGCAGAGTGATGCAGTGTTATTTCAC
GAGCCTTACCTACCTTCCAGCATATTACTGAAACATCTAAGAGCGGTTGT
TCCAGAATCGCAATTTTGGATATGGAATTTACGGGAGCCTCCGACGCATC
TTACAAAAGATTTAAGTcgatataataatattttcaattgGACTTGTACG
TATAGTCGAAAATCTGAAGTTTATGATCCTATTTTTCATATAGTCAGTAA
GGCGGTGAAGAAAACTTTGACAAGTCAAGATTTCTCTAAAGGGAGGACAA
AGATGATTTTTGCAGCAATTAATAATTGTTTTGGTGAGAGAGTTTTAATG
ATCAAACGATTAAAGAAATTGGTCTCGTTTGATGTTTATGGAgcatgtgg
aagaaaagttGGAGATGCCAACCTACCACCATGTCCAAGGTAAATAAAGA
AAGGATTTAAAACTCTTAGAAAACTATTAGAGCTTACTAAACACAGAGCA
GAGCAGCTAAACCAAAGCATTTCTCCAAACAATTCTCTTCATGAAACTGT
GAAAGTTTTAGATGAATACAAAATGGTAAAGTTGATCCTCGCTAATTCGA
ATGGGGATTCTTATTCGTTCGAACAACACAGGgagattcaaattatagaa
agtatttcaagTGGGGTTTCCCCCTATGC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_039347XLOC_039347Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00062803-exon-scaffold_372-1491911889:387491..389119TCONS_00062803-exon-scaffold_372-1491911889:387491..389119Clytia hemisphaericaexon
TCONS_00062803-exon-scaffold_372-1510915933:387491..389119TCONS_00062803-exon-scaffold_372-1510915933:387491..389119Clytia hemisphaericaexon
TCONS_00062803-exon-scaffold_372-1575043694:387491..389119TCONS_00062803-exon-scaffold_372-1575043694:387491..389119Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_372supercontigscaffold_372:387491..389119 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0	0	0	0	0	0.280039	0.147377	0.0159334	0	0.0998365	0.887521	0.96083	0.85762	1.90677	0.518368	1.5672	0	0.027792	0.454876	0.899785	0.232151	0.188552	0.236136	0.352374	0.203787	0.0365616	0	0.0565063
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00062803 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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