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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00062805 ID=TCONS_00062805|Name=TCONS_00062805|organism=Clytia hemisphaerica|type=transcript|length=886bp
CTACTCTATATTTATCTTCTTGAACGTCCCCAAAAAGATTAGGTCTTACA
TGCTCATTACTTTAACCCTAGTAACATTTAGCCATTATCATaatgctttt
ctttttcagtcagtaacaaaaaagataacattcaACAGGCACCAGAGAAC
AAAATCACCAATAAAACATGAGTGATTCTACAACAAAGAGCAAGGCAGAC
CAACAAGCATCACCAAAGCCTATGGACACTGCAGCTTCAGATGCTATGAG
ACAGATGGAGCAGTTAATGTTTACTGCAACTCCTCAAGCAGGTGATAACA
AACCAGCAAAACCATGTCGTGCTTGTACTGATTTCAAATCGTGGGCAAAG
AATATGACAGGAACTAAGTCAAAGACTGGATTCAGTTCAAACTCTTCTAC
ATCACCGTCTAGCAGTGCTGTTGTTGAAGAAGATCCTGAATGCCCATTAG
ATCGTCAAGAACTTGGTCGTCAAACGTGGGGTTTTCTTCACACCATGGCT
GCATATTATCCTGAAAAACCGACGGTGAAAGAACAAAAAGATATGTCTCA
ATTCATAAGATTGTTCTCGAAATTCTATCCGTGTGACGATTGTGCAGGAC
ACCTTCGAGACACGTTAAAGACAAGCGAGCCAGACACTTTAAACAATGAA
ACTTTATCAAAGTGGTTCTGCAATTACCATAACAAAGTCAACGAAAGACT
TGGCAAACCGACATTTGATTGTTCTAAAGTTCTGGAACGTTGGAAAGATG
GTTGGACTGATGGCTCGTGtgattaaatgaaaaatgaattttcccCGACT
ATTGTCGTGCATGCATCTCTTGTCAGAATTTGCTACCAAGCTTACAGTGA
TCAGAAAGTTCATCAGTGTCTGCTCTTGAAAGGAGG Run BLAST on NCBI protein sequence of TCONS_00062805-protein >TCONS_00062805-protein ID=TCONS_00062805-protein|Name=TCONS_00062805-protein|organism=Clytia hemisphaerica|type=polypeptide|length=202bp
MSDSTTKSKADQQASPKPMDTAASDAMRQMEQLMFTATPQAGDNKPAKPC
RACTDFKSWAKNMTGTKSKTGFSSNSSTSPSSSAVVEEDPECPLDRQELG
RQTWGFLHTMAAYYPEKPTVKEQKDMSQFIRLFSKFYPCDDCAGHLRDTL
KTSEPDTLNNETLSKWFCNYHNKVNERLGKPTFDCSKVLERWKDGWTDGS
CD Run BLAST on NCBI transcript from alignment at scaffold_372:60953..64879- Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00062805 ID=TCONS_00062805|Name=TCONS_00062805|organism=Clytia hemisphaerica|type=transcript|length=3927bp|location=Sequence derived from alignment at scaffold_372:60953..64879- (Clytia hemisphaerica)
CTACTCTATATTTATCTTCTTGAACGTCCCCAAAAAGATTAGGTCTTACA
TGCTCATTACTTTAACCCTAGTAACATTTAGCCATTATCATAATGCTTTT
CTTTTTCAGTCAGTAACAAAAAAGATAACATTCAACAGGCACCAGAGAAC
AAAATCACCAATAAAACATGAGTGATTCTACAACAAAGAGCAAGGCAGAC
CAACAAGCATCACCAAAGCCTATGGACACTGCAGCTTCAGATGCTATGAG
ACAGATGGAGCAGTTAATGTTTACTGCAACTCCTCAAGCAGGTGATAACA
AACCAGCAAAACCATGTCGTGCTTGTACTGATTTCAAATCGTGGGCAAAG
AATATGACAGGAACTAAGGTAATTATGGGTTTGTTTGTGTACAGTAAAAC
CTCTAATTAACGGACACTCTAAAAGGCGGACACCTCTAATTAGCGGACAA
TTTCATTTTCCCCGGCCGTTTCCTAGTCAAATCCTCATAAAAAAGTTTCT
AAAAGGCGGACACTCAATTAGCGGACCCTCTGATTAGCGGACCCTCTGAT
TAGCGGACCCTCTGATTAGCGGACAATTTTTTTCGCACGAAATAGCCAAA
ACCCCTATTTTAGCTCTCCAATTAGCGGACATTGAATATCAAACGGGTCA
CAGACGTCGAAAATTGAAAAAAAAAGTTTTAGATATTTTTATTTCAAGCA
CTTATTATTAAGTCTTATTATTCAAATTATTTCTACAAATTTCCAGTTTT
CCCTTGACCCATTCAACGAATTTAGGTTGGCCAAAGAAATCATAAATCGC
TGGTACTTCAAGTCCACCTCGATTTAACCTCTTGTCAGCCACTCGAGCTC
TTCTATGGCCTAGTGTCTGCAGATAAGTACTTTAGACCCCAATTTTGTAT
TTTCGACACCCTGGGATGGCCTAATTTCAAAATTGGAGCTCCGAGATCAA
AAGTCTCTAAAAGGCGGACACTTCTAATTAGCGGACACTAACCCCTTTCC
CCGATGGTGTCCGCTAATTAGAGGTTCCACTGAAGATGAAGACATGTTTG
CAAAGTCGCTTTCGTATGGAAGCCGAGAAGGGTCAGTATGCGATTTGTCA
AGACTTCTTTCATGCTGTCGAGATTTCATTCAAGCTGTTAAGACTTCTTT
CAAACTGCCGCGTTCCTAAAAACTGTTGCATTCCCAAAAATTGTCGCGCT
CCCAAAAATTGTCGCGTTTGACCCTTCTCGGCTTTCATACTTTCGTCATA
GATAAAAATAGTACATTAGATTTACATAGGATAAAATATTCTTGACGCGA
ACAATTCTGGAAAGTTTTACTATGGGATAAGTCTACATCAGTGTTAAAAG
TTCTTCCGTCTCAGGCGGATTTCCGTCTCAGAGAAGTATATAAACAGTTT
TTTTCGTCTGAAAATTCTGCATAATTCACCAATATTTCAAGAATTTACTG
TTCAGAATCCATTTTCCGTCTCAGATGAAAATCTTGCTTTGACCACTGCT
ACATCTTCTTGAAATTACATAAATCTAAAGTGCATTCATCAAAATCCATA
TCTGTAACCTTACGAATAGACTGTTACTCGCTTTAGGGACCGTCCACATA
GTACGTACGCACTAAAGGGTGAAGGGGTGTCTTATCAAACGCGTATGCTT
GTGTACAGGGGGAGGGGGAGGGGTCGAAAGAAAATGTACGTGTGCAAAAG
AATTTTTGCAGTCATATTTTTGCATTTAAAATAGTATGAAAGAGAATAAA
GAATGAATTGTTGTTCTGTTCTTTTGAAACAATAAAGACTTTAAAAGTAA
AGAGGGCGGGGAAACTCAGGAGAGCCAAATGTAAAAATAATCTTGTTTAA
CTTTCTTTATGCTTAAGTCAAAGACTGGATTCAGTTCAAACTCTTCTACA
TCACCGTCTAGCAGTGCTGTTGTTGAAGAAGATCCTGAATGCCCATTAGA
TCGTCAAGAACTTGGTCGTCAAACGTGGGGTTTTCTTCACACCATGGCTG
CATATTATCCTGAAAAACCGACGGTGAAAGAACAAAAAGATATGTCTCAA
TTCATAAGATTGTTCTCGAAATTCTATCCGTGTGACGATTGTGCAGGACA
CCTTCGAGACACGTAAGTAGGACTTGTATTTTTCCTTGAAATGACCTAAA
AGTTAAGTTCAGGTTTAGACGGCCCATTTTTCGCTCTGCCTATTCTAATT
CTGAAATGAAGTTGGCAAAAAGTTGACTGTCTTCGGTCAATGAATTGGCC
TCTTTTAACAACTATGCATTGATTTCTTTCAATCTTTTTCAAGCTAATAT
TTAAACTGCAAATTTCGTTTCATTTTTTGCCTTGTCTTATAATTGGGATA
GGCAGGGCAGAAGAACGGCCATCTAAACTAGAGCTAAGTTTCTTTACTTT
AACCCTCTTTTGGCATTCTCTAAGAGTTTGATTAAAATAACTCTGAAAAT
TCAATTTGTATTACTGCAAACTTCATGGGCTAATGACGAAGATAATAAAG
TTCTTGATTGTCAGTATATTCCCACCTCTGTTATAGATGTTATAGAGTGG
TTTCGGTAGTTTTTATAAAAATGCTTATAAGAATCAATGGGCTATTCCAG
AAAAAGTTTGTAACCCCTATGTTGAGGAGGTCCTTTTTGAGAAAGGACAC
CCCCTGGATTTTTTCTTAAATTTTTCAGGACCCCGCTTGGATTTTTTTCT
CCTTTTTTGGAGCACCCTGGATTTTTGACCCCGTTTTACGTACCATCCTG
GATTTTCCACCTCATTTTACTGACCACCCTGGATTTTTACACTCAAAAAA
CCAGTCCACCCTGGATTCTTTATTTTCCAGACCAACCTGGACGTCACACC
TCCTTAGCATAGGGGGTACAGACTATTTCTGGAATAGCTCAATCCTTCAG
ATTAGCAAGTAGTAGGCAAGTCTAGCCTGAAACGTTTGCCCATAAGAACT
ACTTCTAGGCCTAATTTGCGGAAATCCTCCAAAAATTATATCAAAATCCT
ATCAATTTTTGCACCAATCACATGCGTTTGTATCCAGTGGTATCCCACAA
ATAATGCTACAGATCCTAATAAGTGTTGACCTCATATTAAGCAGTGTTTA
TTTTTAAAAACTATAATTCGGTTAAAATCTTTGTAATCAAATCATTGTTT
AGGTTAAAGACAAGCGAGCCAGACACTTTAAACAATGAAACTTTATCAAA
GTGGTTCTGCAATTACCATAACAAAGTCAACGAAAGACTTGGCAAACCGA
CATTTGATTGTTCTAAAGTTCTGGAACGTTGGAAAGATGGTTGGACTGAT
GGCTCGTGTGATTAAATGAAAAATGAATTTTCCCCGTAAGAAGGTTAACC
CCCTTTCAGAGTTTCGCTAATCTTTGGAAACCCTCTATATCTATATTAAG
GAAAACTATGTTTCAAAGTTCTCCTGGAAATTAATTCATCAAGAAGCCCC
CTAAAATGGAATATGTAGTGCCCTCCAGGTATGAAAAATGAGTCTCTCTC
CGAACTTTGCACCTACCAATATTAGTATTAATTTACACATTACGTATTAA
TTGGCACTTCAGCACTTATATCCTTTTGTAAATTAAAACCATTGAGATGT
GTACAGTATTTTGTAAAATTGCTTTAATAGAAATAGAAATTGAACTGAAG
GAAAAATGATGATTCCCTGGCAAATCTTACTTATTGTTATAAGTTTAGTT
AGACTATTGGTGAAGAGATGCTGATAATTTGAGTTCACACTAACTGCTTT
TGCATTAAATTGAACTGCATTTTTCCTCGACAAGCCTCAACTTAGGTTGA
TCTTATTCTTATAGATATAATTTAATTCGTCTCATAGGACTATTGTCGTG
CATGCATCTCTTGTCAGAATTTGCTACCAAGCTTACAGTGATCAGAAAGT
TCATCAGTGTCTGCTCTTGAAAGGAGG Coding sequence (CDS) from alignment at scaffold_372:60953..64879- >TCONS_00062805 ID=TCONS_00062805|Name=TCONS_00062805|organism=Clytia hemisphaerica|type=CDS|length=1827bp|location=Sequence derived from alignment at scaffold_372:60953..64879- (Clytia hemisphaerica)
GTTAAAGACAAGCGAGCCAGACACTTTAAACAATGAAACTTTATCAAAGT
GGTTCTGCAATTACCATAACAAAGTCAACGAAAGACTTGGCAAACCGACA
TTTGATTGTTCTAAAGTTCTGGAACGTTGGAAAGATGGTTGGACTGATGG
CTCGTGTGATTAATCAAAGACTGGATTCAGTTCAAACTCTTCTACATCAC
CGTCTAGCAGTGCTGTTGTTGAAGAAGATCCTGAATGCCCATTAGATCGT
CAAGAACTTGGTCGTCAAACGTGGGGTTTTCTTCACACCATGGCTGCATA
TTATCCTGAAAAACCGACGGTGAAAGAACAAAAAGATATGTCTCAATTCA
TAAGATTGTTCTCGAAATTCTATCCGTGTGACGATTGTGCAGGACACCTT
CGAGACACATGAGTGATTCTACAACAAAGAGCAAGGCAGACCAACAAGCA
TCACCAAAGCCTATGGACACTGCAGCTTCAGATGCTATGAGACAGATGGA
GCAGTTAATGTTTACTGCAACTCCTCAAGCAGGTGATAACAAACCAGCAA
AACCATGTCGTGCTTGTACTGATTTCAAATCGTGGGCAAAGAATATGACA
GGAACTAAGGTTAAAGACAAGCGAGCCAGACACTTTAAACAATGAAACTT
TATCAAAGTGGTTCTGCAATTACCATAACAAAGTCAACGAAAGACTTGGC
AAACCGACATTTGATTGTTCTAAAGTTCTGGAACGTTGGAAAGATGGTTG
GACTGATGGCTCGTGTGATTAATCAAAGACTGGATTCAGTTCAAACTCTT
CTACATCACCGTCTAGCAGTGCTGTTGTTGAAGAAGATCCTGAATGCCCA
TTAGATCGTCAAGAACTTGGTCGTCAAACGTGGGGTTTTCTTCACACCAT
GGCTGCATATTATCCTGAAAAACCGACGGTGAAAGAACAAAAAGATATGT
CTCAATTCATAAGATTGTTCTCGAAATTCTATCCGTGTGACGATTGTGCA
GGACACCTTCGAGACACATGAGTGATTCTACAACAAAGAGCAAGGCAGAC
CAACAAGCATCACCAAAGCCTATGGACACTGCAGCTTCAGATGCTATGAG
ACAGATGGAGCAGTTAATGTTTACTGCAACTCCTCAAGCAGGTGATAACA
AACCAGCAAAACCATGTCGTGCTTGTACTGATTTCAAATCGTGGGCAAAG
AATATGACAGGAACTAAGGTTAAAGACAAGCGAGCCAGACACTTTAAACA
ATGAAACTTTATCAAAGTGGTTCTGCAATTACCATAACAAAGTCAACGAA
AGACTTGGCAAACCGACATTTGATTGTTCTAAAGTTCTGGAACGTTGGAA
AGATGGTTGGACTGATGGCTCGTGTGATTAATCAAAGACTGGATTCAGTT
CAAACTCTTCTACATCACCGTCTAGCAGTGCTGTTGTTGAAGAAGATCCT
GAATGCCCATTAGATCGTCAAGAACTTGGTCGTCAAACGTGGGGTTTTCT
TCACACCATGGCTGCATATTATCCTGAAAAACCGACGGTGAAAGAACAAA
AAGATATGTCTCAATTCATAAGATTGTTCTCGAAATTCTATCCGTGTGAC
GATTGTGCAGGACACCTTCGAGACACATGAGTGATTCTACAACAAAGAGC
AAGGCAGACCAACAAGCATCACCAAAGCCTATGGACACTGCAGCTTCAGA
TGCTATGAGACAGATGGAGCAGTTAATGTTTACTGCAACTCCTCAAGCAG
GTGATAACAAACCAGCAAAACCATGTCGTGCTTGTACTGATTTCAAATCG
TGGGCAAAGAATATGACAGGAACTAAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00062805-exon-scaffold_372-1575043694:64512..64879 | TCONS_00062805-exon-scaffold_372-1575043694:64512..64879 | Clytia hemisphaerica | exon |
| TCONS_00062805-exon-scaffold_372-1575043694:62768..63012 | TCONS_00062805-exon-scaffold_372-1575043694:62768..63012 | Clytia hemisphaerica | exon |
| TCONS_00062805-exon-scaffold_372-1575043694:61545..61727 | TCONS_00062805-exon-scaffold_372-1575043694:61545..61727 | Clytia hemisphaerica | exon |
| TCONS_00062805-exon-scaffold_372-1575043694:60953..61042 | TCONS_00062805-exon-scaffold_372-1575043694:60953..61042 | Clytia hemisphaerica | exon |
| TCONS_00062805-exon-scaffold_372-1510915933:64512..64879 | TCONS_00062805-exon-scaffold_372-1510915933:64512..64879 | Clytia hemisphaerica | exon |
| TCONS_00062805-exon-scaffold_372-1510915933:62768..63012 | TCONS_00062805-exon-scaffold_372-1510915933:62768..63012 | Clytia hemisphaerica | exon |
| TCONS_00062805-exon-scaffold_372-1510915933:61545..61727 | TCONS_00062805-exon-scaffold_372-1510915933:61545..61727 | Clytia hemisphaerica | exon |
| TCONS_00062805-exon-scaffold_372-1510915933:60953..61042 | TCONS_00062805-exon-scaffold_372-1510915933:60953..61042 | Clytia hemisphaerica | exon |
| TCONS_00062805-exon-scaffold_372-1491911889:64512..64879 | TCONS_00062805-exon-scaffold_372-1491911889:64512..64879 | Clytia hemisphaerica | exon |
| TCONS_00062805-exon-scaffold_372-1491911889:62768..63012 | TCONS_00062805-exon-scaffold_372-1491911889:62768..63012 | Clytia hemisphaerica | exon |
| TCONS_00062805-exon-scaffold_372-1491911889:61545..61727 | TCONS_00062805-exon-scaffold_372-1491911889:61545..61727 | Clytia hemisphaerica | exon |
| TCONS_00062805-exon-scaffold_372-1491911889:60953..61042 | TCONS_00062805-exon-scaffold_372-1491911889:60953..61042 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_372 | supercontig | scaffold_372:60953..64879 - |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
| Term | Definition |
|---|
| IPR017905 | ERV/ALR_sulphydryl_oxidase |
Vocabulary: Biological Process
| Term | Definition |
|---|
| GO:0055114 | oxidation-reduction process |
Vocabulary: Molecular Function
| Term | Definition |
|---|
| GO:0016972 | thiol oxidase activity |
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
| Category |
Term Accession |
Term Name |
| biological_process |
GO:0055114 |
oxidation-reduction process |
| molecular_function |
GO:0016972 |
thiol oxidase activity |
Blast
BLAST of TCONS_00062805 vs. Swiss-Prot (Human)
Match: ALR (FAD-linked sulfhydryl oxidase ALR OS=Homo sapiens GN=GFER PE=1 SV=2) HSP 1 Score: 170.629 bits (431), Expect = 2.801e-51 Identity = 83/165 (50.30%), Postives = 105/165 (63.64%), Query Frame = 3
Query: 279 TPQAGDNKPAKPCRACTDFKSWAKNMXXXXXXXXXXXXXXXXXXXXAVVEEDPECPLDRQELGRQTWGFLHTMAAYYPEKPTVKEQKDMSQFIRLFSKFYPCDDCAGHLRDTLKTSEPDTLNNETLSKWFCNYHNKVNERLGKPTFDCSKVLERWKDGWTDGSCD 773
+P A D +PCRAC DFK+W + +K ED CP DR+ELGR +W LHT+AAYYP+ PT ++Q+DM+QFI LFSKFYPC++CA LR L + PDT ++W C+ HN+VN +LGKP FDCSKV ERW+DGW DGSCD
Sbjct: 59 SPVAEDASRRRPCRACVDFKTWMRTQQKRDTK----------------FRED--CPPDREELGRHSWAVLHTLAAYYPDLPTPEQQQDMAQFIHLFSKFYPCEECAEDLRKRLCRNHPDTRTRACFTQWLCHLHNEVNRKLGKPDFDCSKVDERWRDGWKDGSCD 205
The following BLAST results are available for this feature:
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