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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00062806 ID=TCONS_00062806|Name=TCONS_00062806|organism=Clytia hemisphaerica|type=transcript|length=2369bp
tccagaatcagtttatactttaaataattatgtgagtcgagtttgaaaaa
tcaagccaccgacCGTTTAATGCGACATCCAGAAATATTTGGTCCGTAAA
AATGTCTTGCTATTTTTGACTGAACAAAAGCGGTATGTTCAGGCTGCCCT
TGTGCTAGGAGCAATGTCATGTTGGATAATTAAtaactccagcatcaaaa
caatgatgagaaaaaaattaatgcatAATTATGATAATGCATcaatgtgt
cattgttttgataCTGGACTTTAATAATTATCCAACATGACATCTGCCCA
AAAATCATAGTGGGTACCCCAAATGGGGTGGGGgtgacctttttcaggtg
ggTGGGAGTTGGAGATAAGCTGCCCACTATGGGGCCTAGTAAAAGGTCTA
TTTGAATGTTATAAATTGTTGATTCACAATTTGTGTGTCTTCAGGCAGGC
TGAATTCTAATGTTTTTATTAGGGGGtttcttcaaaatcaaatcaagcaT
ATACCGTACGTGATGAAGGTCTGAAACTGAGCCAAAAAATTGCTACAGTA
CAacaatttttaacttttgtagATCAGGCAAAGGTAGGTAGGCAAAATTT
GACATTTAATTCCCAAGATAGCACTATGATTTCTTACGCCTTTAATTACA
GGCTAAAGTAAAAAAGATTCCACATGAGTCAGTGGGTCAGTGTATAAGGT
TcggcaaaatttctgggaaGTAGCCATCTAGCAGTTTGCAGCTTTGGTGA
TATTTAGAAGTTTTATGGAACATTCTTTGCTTATGAGTTAAGTAAATAAT
AAAGTGCTTTTGTAGCATTGATCTTTGATCTGCTTTGATGCATATTTTGG
GGGatgcacttaggcaaaaatgggtacTGGGTATGTGCAAATGGTAAGGG
TTGTTTTTTTCACCTCTTCACATACCCAAATACCCCACATTGGCCAACCT
TAGTACCCCAAAGGTTATTGGGAGTAGTCAAAATATGTTTTCTCAAAAGG
TGATTGAAGGGATAATACATAATACCTAGCTTGAAAGTCAATATAAAAGC
TGTTACAAAAATCATTGGCAGGGTCAGCTTTTGTCAAGTATCAGTCTCAA
AGAATTTAAATGTCAAAGCTTAGAGAGACTGCACTGTTGCTGTGTCAGGT
GCAAAATGTTCAAGTCAATGTCAAAGAGCATTAGAAGTTTAAAAAACATC
TCAACAGAAAATACCTTCAATTCTGACTTGAATTATATATAATCTACGCA
AaattttatcccactaaaaagTAATTTAAAAACAGAAGATTTTGATACTT
AATGATCAATCTTTACAAACATTGGAAAGTGACAagaatttttctgtttc
ttttgTTGGCTGGACTGACTTCATTCACATTGATTGCagttgatttcttt
tataacaagACATTTCCCTGGTGTTGCTTCAGTCATTCTTATTGTTATTT
CGGTTTGTTGATCCCTTGTCTTGCTCCTGTCAGTGTTGCATTTGTTGTTC
TCAATTGGCTTGGATTGAAGTTGTTCATTCATAACTGATTAAATCACTCA
ATTTTGATAACGGTCAACATGTCATCATCAGATCTGATTCCTAACCCAGA
GATCCATACTTTGGAAGTTGCCACAAGCACAGAAGGAGAAGATGAGACTT
GTGTCACCTATGTTATGCATCATGAAGATCACACCATAGGAAATTCACTT
CGTTATATGATCCTCAAAAACCCTGAGGTTGAGTATTGTGGATACAGCGT
TCCTCATCCATCAGAGGAGAAAATTAATCTGAGAATACAAACTAGTTCAA
AGCCAGCTGTGGAAGTATTGAAAACAGGACTTGTTAAtttgcaaaaagtt
tctttACACGCTTTAGATACTTTTCAAGAAGCTGTGAtgaattttaaaca
aaatcgaaaagaaaataatgaacaAGGAGATGTTGAAATGGACAGCGATT
GAATCTTTTTGGGATAAACTTCCATATGTCCTTCATTTCATTTTGGTTAA
TAGAATGATACCTTTACTGTTTTGTTTCGCTAACTGTAGGAGAGTATGAG
GTATTTATTTGGTACGGACAATGCTAAAGTAACATTTATAATTGTGGAAA
GCTTTCGTACCATGATGTTTTTAAATGTTCATTATACCGTCATCATGGGG
AGGTTTTATTAAACAACATTTTTGACAGTATTTTGAAGGaactttttaat
ttcaattttttgataattatGATCATTATTTGTCAACATTTGAAAAGATG
TAAAacgtttttctttgctttattgtacagtgaagtctctttaactcgaa
cctctataactcgtaTGTCTCTTTAATCCGAACAACTTTTCTAGCCCCTT
CATTTAAAAACCATACTCC Run BLAST on NCBI transcript from alignment at scaffold_372:65040..69380- Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00062806 ID=TCONS_00062806|Name=TCONS_00062806|organism=Clytia hemisphaerica|type=transcript|length=4341bp|location=Sequence derived from alignment at scaffold_372:65040..69380- (Clytia hemisphaerica)
TCCAGAATCAGTTTATACTTTAAATAATTATGTGAGTCGAGTTTGAAAAA
TCAAGCCACCGACCGTTTAATGCGACATCCAGAAATATTTGGTCCGTAAA
AATGTCTTGCTATTTTTGACTGAACAAAAGCGGTATGTTCAGGCTGCCCT
TGTGCTAGGAGCAATGTCATGTTGGATAATTAATAACTCCAGCATCAAAA
CAATGATGAGAAAAAAATTAATGCATAATTATGATAATGCATCAATGTGT
CATTGTTTTGATACTGGACTTTAATAATTATCCAACATGACATCTGCCCA
AAAATCATAGTGGGTACCCCAAATGGGGTGGGGGTGACCTTTTTCAGGTG
GGTGGGAGTTGGAGATAAGCTGCCCACTATGGGGCCTAGTAAAAGGTCTA
TTTGAATGTTATAAATTGTTGATTCACAATTTGTGTGTCTTCAGGCAGGC
TGAATTCTAATGTTTTTATTAGGGGGTTTCTTCAAAATCAAATCAAGCAT
ATACCGTACGTGATGAAGGTCTGAAACTGAGCCAAAAAATTGCTACAGTA
CAACAATTTTTAACTTTTGTAGATCAGGCAAAGGTAGGTAGGCAAAATTT
GACATTTAATTCCCAAGATAGCACTATGATTTCTTACGCCTTTAATTACA
GGCTAAAGTAAAAAAGATTCCACATGAGTCAGTGGGTCAGTGTATAAGGT
TCGGCAAAATTTCTGGGAAGTAGCCATCTAGCAGTTTGCAGCTTTGGTGA
TATTTAGAAGTTTTATGGAACATTCTTTGCTTATGAGTTAAGTAAATAAT
AAAGTGCTTTTGTAGCATTGATCTTTGATCTGCTTTGATGCATATTTTGG
GGGATGCACTTAGGCAAAAATGGGTACTGGGTATGTGCAAATGGTAAGGG
TTGTTTTTTTCACCTCTTCACATACCCAAATACCCCACATTGGCCAACCT
TAGTACCCCAAAGGTTATTGGGAGTAGTCAAAATATGTTTTCTCAAAAGG
TGATTGAAGGGATAATACATAATACCTAGCTTGAAAGTCAATATAAAAGC
TGTTACAAAAATCATTGGCAGGGTCAGCTTTTGTCAAGTATCAGTCTCAA
AGAATTTAAATGTCAAAGCTTAGAGAGACTGCACTGTTGCTGTGTCAGGT
GCAAAATGTTCAAGTCAATGTCAAAGAGCATTAGAAGTTTAAAAAACATC
TCAACAGAAAATACCTTCAATTCTGACTTGAATTATATATAATCTACGCA
AAATTTTATCCCACTAAAAAGTAATTTAAAAACAGAAGATTTTGATACTT
AATGATCAATCTTTACAAACATTGGAAAGTGACAAGAATTTTTCTGTTTC
TTTTGTTGGCTGGACTGACTTCATTCACATTGATTGCAGTTGATTTCTTT
TATAACAAGGTATTTTGATTTTTTTTTTAATTATTTTAGATGATATATAC
ATTGTTCTTTCATTTTAAGAGCCCCCTGATCGTGTTAATCCCTTTAATTT
TTACGCACGTTTTGCATTCGCACAAAGTGAATATGTTCTCAAAAATAAAT
GGTAGACAAAAGGTTCTTTCTTTGCCACTTGGCCTTTTTGAAAATTTAAA
GGTAGGCAAATTAATAATGGTTTTGAATGTGTATATGTGTAAAAATCGTA
TCTCATCAAATAAAATGTCCCTGATTCATCTTAAATAGGGTCGTTGTAAA
ACATGGAGTAGCTCCATGGAGTACTCCAATGGAGTACCTATTGGAGTACT
CTAAAAATATTGCAGACCAGATTTTAGATCGCCGCGAGAGGAAAATAAAG
ACCTGTATAATTTCTCCATTTATTGTGATTGTCTTATTATTTTGTTAATT
GAAGTGTATTTTGTCAATAAAATGACAATGAATAATTTAATGCTCACAGA
CTGTCCCCAACTGCCATTACATATCCAGTCATACCTGCATCATATTGAGT
ATGATAAAAATTCCTCTTGGAAATGGGTTGATAAGCTATGTATTCTATGA
TTGTCACAATATTTTCTTTAAAAAAGTCAATCTGTTGACAAAAGGACAAA
AGAAAAATATTGCTTAAGNNTTAGAATCAACAAAGATTTTTAAGCAGAGA
GCGTGCGCTATATGAGCTTTATTGCCAGAAATGATGGTAGCCATTTTTTC
ACAAACAAATACTTGAGAAATTCTTTTGCTTGCTATAAATTGGAAGTTTA
CAGCTGTTGGAAAAGGTTGGAAAAGGTTGATTATCAAATTTGTGATATTC
ATCGCTCTGACAGGTATTTTAGGGGGTACTCCATTAGGTACTCCATTGGA
GTACTCCATGGAGCTAATCCATGTTTTACAACGACCCTCTTAAATATGCC
TCTGGAATGAAAAATTTTGCTAAGAGCTGATTATATTTCTTTTTGCTCTT
GTTGCCTTTAAGTTATATCAATAACATTAAAAAATATCCAAGCTTTTACT
CGATGCACAAAAATTAAAGGATGTATGAATGCCCTATTCTGAAAGGCGCG
TGAAAGTAAAAGGCTTAAAAATTTAAGGTGAGAAGATGAAAGACCCCGGA
AAATCAATGGGATTAAGGTATCAGCTAATCTGAAACTGCTCAAGCATTCT
TAGGTGGAATAATTGAAACAACCCCTTTTTTATGATCAACAGCTAGATGA
CCTGATCTGATTTGATATCTATTGTTTTGTGTTTGTTAAATCTTCCTTGT
TTCTATTTCAGACATTTCCCTGGTGTTGCTTCAGTCATTCTTATTGTTAT
TTCGGTTTGTTGATCCCTTGTCTTGCTCCTGTCAGTGTTGCATTTGTTGT
TCTCAATTGGCTTGGATTGAAGTTGTTCATTCATAACTGATTAAATCACT
CAATTTTGATGTGAGTTTTACTTTGTTGTGATATCAGGACCTTTAAAATA
AAACCGTTCAAAACCTTCAGAACCTTGGCTTTAAGGGCAGAAACTTTCGC
GTTTTTCGCGAAATTGATCCTTTTTCGCGAAAGTTTCTGCCAGGTAAAGA
ATTAAACCTGAAAAAGACGAAAGCTTTTTTCACGAAAAATAAACTTTCCT
ACTCAGTTTTGCACTAATTGCTAAATTTTGGTGTATTTTATGAGTTTTTG
TTACCAAAAAAGGTAAATTTTATATGAATTCGCGAAAGTTCTATCTGTGA
AATTTCGGCTAAAACCATAATTCGCGAAACTTTCTGCCTGCGAAACTTTC
TGCCCTTAAAGTAACCAACCACTGTTTTTATGAGAAAAGTGAAATTTGCC
TGAGCATTAAATTACAATGAATATACTTTTAAAATGCTGAAATCTCAGTC
TGATATTTTTCAAGGGAGTATAATTTTTAAAATAAATTAACTATCAAACT
TGACATTTTTTTAATAAGAATATCTATTTTGTGTGATATCCTAAGGACTG
CCTTTAGAGTCCATAAAACCTTATAATGTTATTGTTCTCAATATTTTGGT
CGTCGAAACCTAATATTCTTATATGGTTTGTAACACTTATATATGATGTG
CTCAATACTTGTTACCTTTTTTTTCCACAGAACGGTCAACATGTCATCAT
CAGATCTGATTCCTAACCCAGAGATCCATACTTTGGAAGTTGCCACAAGC
ACAGAAGGAGAAGATGAGACTTGTGTCACCTATGTTATGCATCATGAAGA
TCACACCATAGGAAATTCACTTCGTTATATGATCCTCAAAAACCCTGAGG
TTGAGTATTGTGGATACAGCGTTCCTCATCCATCAGAGGAGAAAATTAAT
CTGAGAATACAAACTAGTTCAAAGCCAGCTGTGGAAGTATTGAAAACAGG
ACTTGTTAATTTGCAAAAAGTTTCTTTACACGCTTTAGATACTTTTCAAG
AAGCTGTGATGAATTTTAAACAAAATCGAAAAGAAAATAATGAACAAGGA
GATGTTGAAATGGACAGCGATTGAATCTTTTTGGGATAAACTTCCATATG
TCCTTCATTTCATTTTGGTTAATAGAATGATACCTTTACTGTTTTGTTTC
GCTAACTGTAGGAGAGTATGAGGTATTTATTTGGTACGGACAATGCTAAA
GTAACATTTATAATTGTGGAAAGCTTTCGTACCATGATGTTTTTAAATGT
TCATTATACCGTCATCATGGGGAGGTTTTATTAAACAACATTTTTGACAG
TATTTTGAAGGAACTTTTTAATTTCAATTTTTTGATAATTATGATCATTA
TTTGTCAACATTTGAAAAGATGTAAAACGTTTTTCTTTGCTTTATTGTAC
AGTGAAGTCTCTTTAACTCGAACCTCTATAACTCGTATGTCTCTTTAATC
CGAACAACTTTTCTAGCCCCTTCATTTAAAAACCATACTCC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
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| TCONS_00062806-exon-scaffold_372-1575043694:67972..69380 | TCONS_00062806-exon-scaffold_372-1575043694:67972..69380 | Clytia hemisphaerica | exon |
| TCONS_00062806-exon-scaffold_372-1575043694:66521..66669 | TCONS_00062806-exon-scaffold_372-1575043694:66521..66669 | Clytia hemisphaerica | exon |
| TCONS_00062806-exon-scaffold_372-1575043694:65040..65850 | TCONS_00062806-exon-scaffold_372-1575043694:65040..65850 | Clytia hemisphaerica | exon |
| TCONS_00062806-exon-scaffold_372-1510915933:67972..69380 | TCONS_00062806-exon-scaffold_372-1510915933:67972..69380 | Clytia hemisphaerica | exon |
| TCONS_00062806-exon-scaffold_372-1510915933:66521..66669 | TCONS_00062806-exon-scaffold_372-1510915933:66521..66669 | Clytia hemisphaerica | exon |
| TCONS_00062806-exon-scaffold_372-1510915933:65040..65850 | TCONS_00062806-exon-scaffold_372-1510915933:65040..65850 | Clytia hemisphaerica | exon |
| TCONS_00062806-exon-scaffold_372-1491911889:67972..69380 | TCONS_00062806-exon-scaffold_372-1491911889:67972..69380 | Clytia hemisphaerica | exon |
| TCONS_00062806-exon-scaffold_372-1491911889:66521..66669 | TCONS_00062806-exon-scaffold_372-1491911889:66521..66669 | Clytia hemisphaerica | exon |
| TCONS_00062806-exon-scaffold_372-1491911889:65040..65850 | TCONS_00062806-exon-scaffold_372-1491911889:65040..65850 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_372 | supercontig | scaffold_372:65040..69380 - |
Blast
BLAST of TCONS_00062806 vs. Swiss-Prot (Human)
Match: RPAC2 (DNA-directed RNA polymerases I and III subunit RPAC2 OS=Homo sapiens GN=POLR1D PE=1 SV=1) HSP 1 Score: 120.939 bits (302), Expect = 2.747e-31 Identity = 55/97 (56.70%), Postives = 69/97 (71.13%), Query Frame = 3
Query: 1635 GEDETCVTYVMHHEDHTIGNSLRYMILKNPEVEYCGYSVPHPSEEKINLRIQT-SSKPAVEVLKTGLVNLQKVSLHALDTFQEAVMNFKQNRKENNE 1922
G D CVT+V+H EDHT+GNSLRYMI+KNPEVE+CGY+ HPSE KINLRIQT + PAVE + GL L V H LD F+ ++ ++K + NE
Sbjct: 34 GTDRHCVTFVLHEEDHTLGNSLRYMIMKNPEVEFCGYTTTHPSESKINLRIQTRGTLPAVEPFQRGLNELMNVCQHVLDKFEASIKDYKDQKASRNE 130
The following BLAST results are available for this feature:
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