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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00062810 ID=TCONS_00062810|Name=TCONS_00062810|organism=Clytia hemisphaerica|type=transcript|length=791bp
GTCCTTTGTTTCTTGGTCTTACGTTACTTCTCTGTTCAGTCTCTTGACAA
TTAATTCTACGCAGTCATTTCAGTTCTTTTGTATAACTTTTGTCATATAA
TTAGTTTATTCACACTTAGGCAATTATctagtattttcaattttattcaa
GTACGCGTTTTTTCTATCTCGATTTTCATGAATCATCAATCAAGCTATGA
GAAGCTTTGTGTGTGGTTGCGTTAACATGGAGTTTCAGACTTAGACAGTT
TTGGTCTTaactttcaaaatcaaatcaaattcaatTCTCAACTTTTGTGC
ACAGTTTTTTACAGTTTTTACATACTGGCTACCTGtttgaacaatcGTAT
TCACTTCAATCGAAGTTCCAAACTGTGTCAGTTTATTTCCGTGCACAACA
AAGGTAGTGACGTTTTTGGAGGAGCTCAATGTATGCTAATCCTCCATGGT
TATGTTTAGATAAGTACTAAATTTGTGAAATTCTAATGTTTACTAAATCC
CCATGGAAATGTTATAAATAAGTGctaaatttgtaaaattctAATGTGTG
CTAAATCCCCATGGTTTCGTTTGCGTAAGATtaaatttgacatttgaaat
ttgatatttgatttcaaaatttttctttcgtaCATCTTGGAAAACTCGTT
CCATAATTCCTTTAAATCTCTTTGAAGAAATGGCTCAatcaattacaaaa
aaTCCTGCTGGAGACAAATACGACCACCAATGGGAAGCTTTAGCTGGATG
GTTTCTGGGGCCACGTGCTGAAAACCGAAACATCTTCAATN Run BLAST on NCBI transcript from alignment at scaffold_372:92114..97183- Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00062810 ID=TCONS_00062810|Name=TCONS_00062810|organism=Clytia hemisphaerica|type=transcript|length=5070bp|location=Sequence derived from alignment at scaffold_372:92114..97183- (Clytia hemisphaerica)
GTCCTTTGTTTCTTGGTCTTACGTTACTTCTCTGTTCAGTCTCTTGACAA
TTAATTCTACGCAGTCATTTCAGTTCTTTTGTATAACTTTTGTCATATAA
TTAGTTTATTCACACTTAGGCAATTATCTAGTATTTTCAATTTTATTCAA
GTACGCGTTTTTTCTATCTCGATTTTCATGAATCATCAATCAAGCTATGA
GAAGCTTTGTGTGTGGTTGCGTTAACATGGAGTTTCAGACTTAGACAGTT
TTGGTCTTAACTTTCAAAATCAAATCAAATTCAATTCTCAACTTTTGTGC
ACAGTTTTTTACAGTTTTTACATACTGGCTACCTGGTATGTTGCTTTCTG
CTTTTTGCCTTTGCCTCTCTGTGTTTTTCTGTTCATTAGCCTATTTGGCT
CAGGTGTCTGGAATTAGATTATTTTTGATATTTTTAAATCAATTTCTTTA
AGCTTAAGTTAGGTTTCATTAATTTTGGTATATTTCANNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NTTCGTCACTTAGTTTTGTCATTATTTTTAATTTTCAGTTTGAACAATCG
TATTCACTTCAATCGAAGTTCCAAACTGTGTCAGTTTATTTCCGTGCACA
ACAAAGGTAGTGACGTTTTTGGAGGAGCTCAATGTATGCTAATCCTCCAT
GGTTATGTTTAGATAAGTACTAAATTTGTGAAATTCTAATGTTTACTAAA
TCCCCATGGAAATGTTATAAATAAGTGCTAAATTTGTAAAATTCTAATGT
GTGCTAAATCCCCATGGTTTCGTTTGCGTAAGATTAAATTTGACATTTGA
AATTTGATATTTGATTTCAAAATTTTTCTTTCGTACATCTTGGAAAACTC
GTTCCATAATTCCTTTAAATCTCTTTGAAGAAATGGCTCAATCAATTACA
AAAAAGTAAGTGCAAAATATTTGATTTTAAGAATTTTTGATGTACGACTT
TACTTTGGTTCTGAAGTTTTAACGTGAGTCTACTCTCTCTCTAGACTAGT
AAGTAGCTGTCGCTATAAATGCCCCGCTAACGCATTCATAATTTGAAAAG
CCGCATTCCACCAGATTGTTTTATTGGAACACCATCCAAAAAGCGCACAG
CTAGAGATTTCTAACGTTGAGCGCTTGTCCCGTTCGACTTTGAAACCATT
GCGAGCAGCACAATATCGAAATATTTTTACACAAGAAAAAACAAACACAA
AATCAATTATTTTTCTTCCAGTCTGCTAAATTGCGTGGGTTGCGTGTGTG
CGTGAGTCGCTTGGGTGCGTGGGTCATTTTTTTGCGTGGGTGCGAGCATC
AAAATATTTGTTGCGTGGGTCAAAATTTTTGCGTTGGTCATTTTTTTTTG
CGTGGGTCATGTTTTTTGCGTGGGTCAATATCTTTGGTGACTACTATCGG
TATTGACAGTCAAATCGGGGCAGTGCAGATAATTAACATTTTAATTTTTA
GTAAGCTTTTTCTTTATAAGAAACAAGCTTATAACTCTTGAATAAAACTT
AGTGATCGGTATTGACAGTCAAATCGGGGCAGTGCAGATAATTAACATTT
TAATTTTTAGTAAGCTTTTTCTTTATAAGAAACAAGCTTATAACTCTTGA
ATAAAACTTAGTGATCGGTATTGACAGTTTTCACAATGTATATCAGGAAC
ATAAGCATATTACTTTTTTTGTAATTGTTTTCTTCATGAGAAACAAACTT
ATAGCTCTTAGTCTTGAATAAAACTTAATTAGTAATTGGTATAAATATAA
ATATAAACAAGTGATACTTTTATGGACCTACCTGGTTATGCATTTAACAC
ATAATTGATATCTACGTGAGCGTGACCATTAAACAATCATTCAGAACACA
AATAGTGACGATCTATTAAAATAAGTCGTTTGTTTCTTATAGAAAAACGT
TTAGAAACCAAAATTTCATGTTCTTGAAATATTCTTTCATATTCAAGACT
TCGTGAGCAAAAAAAACATATATCTCATCAAAAATTGAGTAATTTGGCTA
ATAACATTGATGCATGCTTATTAATAGCGATTCTTATAGATAAACATGCG
TTTTTTGAGCTCAAAAATTCACTTTTTCACAAAAATCTACTTGAGCCATC
TTTAACCTACATGCAAAAAATCAAAAAACAATGATCCAATATTTCACAAA
GTCCAAAAAACCAGTTTTGTAGCCGTTTTTTTGGCCCAAATTTGCCCAAA
AACACATTTTTCGAAAATCGGGCATCTTTGTGCAAAAAATCATAAAGAAT
GAAAGAGCCAATCTCGAAAAGCTAATACCTAAGTAATTTATAACGTGCTT
ATAAAAAAATAGCGCATTTGGCCAGTTTTTCTATAAAAACACGCCACCCA
GTTGGCACACAACGTTGTTACAACGTTCATCTAACGTTATATGGACGTTG
TGAACATTAAATAAACGTTGAAACGACGTTATGTGCCAGCTGGGCAAGCA
ACCAAAATTTCATGTCTAAACACACATATTCTTCAAAAGTAAGCGCCCTC
ATGAGCAAAAAAAACACATCTATCTCATAAAAAAGACAAGGTGCAATCGA
TACGAGAGGTAGAAGGTTGAAATGATATTTATCAAATTCAATATAAGAAA
AAGCAAAATGCAGTCACATAATGCAGCTCCACATTGTTTTCAAAACTCTT
TTCTTGTGTAGATTGCGAAAGTGCAAAGTTCAAAACCTGTCGCCTTACAT
GATTGTGTGTGAAAGAGATTACGATATATAATTACGATACCAAGTTTTCA
TTGCAACGTCATAGTCGGGCAATTGAGTTTCTGTTTCTCAAGAGTTATAT
ATACCTGTTCATTATAAAAAAATACTTACAGTTAAAAAGAATAAATCCAC
ATTTCTTCTGCACGAGGCCCGGAATCTTCGAGCTAGAAAACTTCGAGTTA
GCAATTTTCGAGTTAAGAATTTTCAAGTTAGCTAAATTATGACGTCATAA
AAGTGGATATTATGACGTCACTCGACTCTAGCTAACTCCAATTTCTTTTC
CACAAAACCTTTTTTCGAGTTAGCTAACTCGGAACTTGGATTTTTTTAGA
AAAAGTTAACTTGAAATTTTTTCATACATTTTTGTATGGTAGTAGGTAAA
TCCAAAAAATTCAAATGGTTTCGAACTCGGTTTCGAATGTTTTTATTCAT
ACATAATACGAATGTTTTTATTCAAAATTCGAGTGTTAGTTTGGAAATTC
GAATTTTTAGCTCTACGGTCGAAGCTCGAAATATGAACAAAAGAAATGAA
AAACAAGAAAAATCTCTTCAAAGGAATTGAAGCTAAGTACCTGAAAAAGA
TAAACACAAAGGCCACGCAGTATTGAAAAGTTAAATGCCAAAGCTGAAGA
AAAATTATTGCTTTTTTTAACATCTTACAAAGGAAAACAACAACACTCCT
CAACACTCCCTTTTGAATTTGTAGAATCATAAAGAAGTAATGTGAGAAAT
ATTCAATATAACTCTCAAATGTATTGTATGTACATAACTAACATACCTTG
AAATAATCTCCCGAATAATCTGCAACATATCTGTAGAACTGACAAAACAA
TTATCTGGAGCCAAAGTAAGCAAAGAACACCCAGTGTGATAAAAGATCAT
ACACTCATACAAGTCGAAATTCAAGCATCAAAATGTAGTTTTATGAAGTA
AAATTTTGTTGGTGCACACAGAAGATACATCAGGGCACTTAAACTCAATA
AATCTAATTTCTCATCTTTTACAAAATCTCAACTCCACATTAAATAAGAA
GAAAAGTGGCCAAGCCAACTTCCTTCCGCCTACTTCTTTTTCGAAATTTT
TTGGATTTTTCTACTACCATACAAAAAAAATCCAAGATAGCTTACTCGAA
AACTTGTAAACGAAAAGTAAATTCCGAGTTAGCTAACTCGAAAAAAAGTT
TTGTGAAAAAGAAATTCGAGTTAGCTAACTTGAAAAATATTTTTTGAAAA
ATAAAATTCGAGTTACGCCTCTAATTTAATCTGCAGTAGACGCTAATTCG
GATTTCAAGGGGGAAGACATTTTTCGTATACAGAGAATTTTGACCCACGC
ACAACCTTTGACCCATGCAAAAAATATTTTGACCCACGCACCCACGCAAA
ACAATGACCTACGAAAAAATATTGACCCACGCACCTACGCACTCACGCAC
TCATGCAACCCACGCAATTTAGCAGACTCTTTTTTCTTCTTTCTGTTGGC
TGATAAAAAAAGAAACGAGGTATACAGCTTGGCGTATATAATAAAATATC
TTTATATCCCTTGTTTACTTTATAAGAACTAATTACCGAAAGATATATGG
CTGTCAATCAAGAGTTATTGATTTGATTCTTATAAATTAGATGCTTATAA
GAAAATAAACATGCTCATATTGTGCGCCATCCTTTGTTTACTTTGTAAGA
ACTAATTGCTGAAAAGTATATTGCTGTCTATCAAGAGTTATTAATTCTTA
TAAATTCTTCTTATAATTCTTATAAAGTAGATGCTTATAAAAAAAATGAA
CATGCTGATATTGTGCGCCGCTGTTCCTGTTTTACTATGTAAGAACTAAA
AATCAATACAAGTCACAACAAAATAGACAAAACAATCGGCCCACTGAAAA
TCGGGATAAACATCAACGACATGAATATTTTTCTGGCGAACAAGCCCGCT
ACGTGAAGTAACAAAAGCAACTGCGGGGCAATTAAGTTTTTACATGTGTT
TTTACATAAATTTCGAGCTTTCTTTTTCCAGTCCTGCTGGAGACAAATAC
GACCACCAATGGGAAGCTTTAGCTGGATGGTTTCTGGGGCCACGTGCTGA
AAACCGAAACATCTTCAATN
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00062810-exon-scaffold_372-1575043694:96849..97183 | TCONS_00062810-exon-scaffold_372-1575043694:96849..97183 | Clytia hemisphaerica | exon |
| TCONS_00062810-exon-scaffold_372-1575043694:96029..96395 | TCONS_00062810-exon-scaffold_372-1575043694:96029..96395 | Clytia hemisphaerica | exon |
| TCONS_00062810-exon-scaffold_372-1575043694:92114..92202 | TCONS_00062810-exon-scaffold_372-1575043694:92114..92202 | Clytia hemisphaerica | exon |
| TCONS_00062810-exon-scaffold_372-1510915933:96849..97183 | TCONS_00062810-exon-scaffold_372-1510915933:96849..97183 | Clytia hemisphaerica | exon |
| TCONS_00062810-exon-scaffold_372-1510915933:96029..96395 | TCONS_00062810-exon-scaffold_372-1510915933:96029..96395 | Clytia hemisphaerica | exon |
| TCONS_00062810-exon-scaffold_372-1510915933:92114..92202 | TCONS_00062810-exon-scaffold_372-1510915933:92114..92202 | Clytia hemisphaerica | exon |
| TCONS_00062810-exon-scaffold_372-1491911889:96849..97183 | TCONS_00062810-exon-scaffold_372-1491911889:96849..97183 | Clytia hemisphaerica | exon |
| TCONS_00062810-exon-scaffold_372-1491911889:96029..96395 | TCONS_00062810-exon-scaffold_372-1491911889:96029..96395 | Clytia hemisphaerica | exon |
| TCONS_00062810-exon-scaffold_372-1491911889:92114..92202 | TCONS_00062810-exon-scaffold_372-1491911889:92114..92202 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_372 | supercontig | scaffold_372:92114..97183 - |
Blast
The following BLAST results are available for this feature:
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