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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00062927 ID=TCONS_00062927|Name=TCONS_00062927|organism=Clytia hemisphaerica|type=transcript|length=1359bp
CTTGGAAGTAAGACACGTCAGCTAGAAACACCAACACCAAGTAGAATTAT
TCATcaccaatttttttaaagatggtCCAAGCGAAAAATGTTGTTTTCGT
GATTTCTAGTTGTGTAGTAGCTTTAGGATTATTTGCAACGTCTTGTGCAG
GGATGGGTTGGGCTTGGGGTGAAATGAATCTTAGCAATTTTCATGCTTCA
GGTAATTTTGGGCTATGGAGATCATGTGTATCATCTACATCGTTTCGTAA
TGGCGTTAGAAAATGCACAGAAATTCCAGAGAAGCAGGTTAATCCCAAAT
TTCAACTAACAAGAGGCTGTAATGTGATGGCAACAATTGCGAGTATCGTG
GCAGTCATTATGGCTTTCATCAATATCACACAAAATGGTAACTCCATAAA
AAATGGAGGTATTGGAATGGCTTGCGCTTCCGGTCTAGGAATTGTAGCAG
GAGTGATTTTTACAATATATCTTGAACATATTAAAgacgaatttcaaaat
ggttcATTTTTAGTATGGAAGTATGGATGGGCATATTTCTTGAATTGGGC
AGGTGCTGGAGTTGCCTTATTTTTGGCTCTTATTTCACTCTATGACAGTC
GAACGAAAAAAACAGGACCACCCGGAGCAATTAGGATGCCAGAAGTAACA
CCTTAGAATGAGAAAGCTCACAATGGCTGTTATTGGGTTCAtcaatagat
ttttaaaaacGTTGGGATTacaattcaatttttataaggTGTTTGatcat
taaaaaattattttattaaaatgGTTATGTGCATATACCCCACCTATGTA
ATTCAATCCAATTTTTCTAGCAATGTTTACTGCAAAACATCATCCAATAC
CAGGGTATAATCACCCAGCCGGTACACAACGTccaaacaacgtccatttg
acattcataaggtccaaataacgttatttgaacgttaaaacaacgttttg
tACCAGCTGGGCAAGGAACTTAGTGGTTATGTTAGGATTCTGTATAgtaa
tgattgacagattagcGTGAATATATTAATGACTGGACGTCCATCTTCTA
TTATTTCTTTGAAGCGAgtttcgttgccgcctgtatatCCAATTTGCTAT
AAAAAACctacaatattccgtcataattttatttctttgaatcaCTTAGC
TAAataggattgatagagcttgaagattactcgtaattcacaaaagaatt
attctCGAATTTTTTCATAAGTTTGCAACGTATTTCgtcaacatttttca
acactgaaatgcagaattttaactgcatgtatacttttgaatcacttttg
tcgctccaataattgtttttttgtgtgACTGGAAAAACATAGTATGCCAA
ATTTGAGAG Run BLAST on NCBI protein sequence of TCONS_00062927-protein >TCONS_00062927-protein ID=TCONS_00062927-protein|Name=TCONS_00062927-protein|organism=Clytia hemisphaerica|type=polypeptide|length=194bp
MVQAKNVVFVISSCVVALGLFATSCAGMGWAWGEMNLSNFHASGNFGLWR
SCVSSTSFRNGVRKCTEIPEKQVNPKFQLTRGCNVMATIASIVAVIMAFI
NITQNGNSIKNGGIGMACASGLGIVAGVIFTIYLEHIKDEFQNGSFLVWK
YGWAYFLNWAGAGVALFLALISLYDSRTKKTGPPGAIRMPEVTP Run BLAST on NCBI transcript from alignment at scaffold_374:24967..26741- Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00062927 ID=TCONS_00062927|Name=TCONS_00062927|organism=Clytia hemisphaerica|type=transcript|length=1775bp|location=Sequence derived from alignment at scaffold_374:24967..26741- (Clytia hemisphaerica)
CTTGGAAGTAAGACACGTCAGCTAGAAACACCAACACCAAGTAGAATTAT
TCATCACCAATTTTTTTAAAGATGGTCCAAGCGAAAAATGTTGTTTTCGT
GATTTCTAGTTGTGTAGTAGCTTTAGGATTATTTGCAACGTCTTGTGCAG
GGATGGGTTGGGCTTGGGGTGAAATGAATCTTAGCAATTTTCATGGTACG
TACGTTAATAGTTTTCAATTTGAATAAACTTTTATCAACATTAAGGCCGG
TCTCCCACTTTCGCACGAAATGAGCGAAAACATTTTATAACGTTTTTGTA
AAGTTATTGGTCGGTTGAAAATGAAGCAATTCCATTGGGCAAATCTGACG
TAACGGTTTACAAAAGTTGAACTTCTTTCAACATTTTATTTTTATCGCTT
GAAACTTTTTAATGACGTAATCTTTTCTGTAGGCAAAAACGAACAATCCA
GCAATTAAAGAGAATGATCAAGGGTAAGTGGGTGCCCTCTTACCTCTAGT
ATATAGCAATCGAAAGAGAACCCTTTTATTCACCTCCGACTGAGGACGCA
TACTTTATGCGTTTTGAGATTAAGCTGTCGATTTAATCTTTATCCTTTGA
TTATTAATTAGCTTCAGGTAATTTTGGGCTATGGAGATCATGTGTATCAT
CTACATCGTTTCGTAATGGCGTTAGAAAATGCACAGAAATTCCAGAGAAG
CAGGTTAATCCCAAATTTCAACTAACAAGAGGCTGTAATGTGATGGCAAC
AATTGCGAGTATCGTGGCAGTCATTATGGCTTTCATCAATATCACACAAA
ATGGTAACTCCATAAAAAATGGAGGTATTGGAATGGCTTGCGCTTCCGGT
CTAGGAATTGTAGCAGGAGTGATTTTTACAATATATCTTGAACATATTAA
AGACGAATTTCAAAATGGTTCATTTTTAGTATGGAAGTATGGATGGGCAT
ATTTCTTGAATTGGGCAGGTGCTGGAGTTGCCTTATTTTTGGCTCTTATT
TCACTCTATGACAGTCGAACGAAAAAAACAGGACCACCCGGAGCAATTAG
GATGCCAGAAGTAACACCTTAGAATGAGAAAGCTCACAATGGCTGTTATT
GGGTTCATCAATAGATTTTTAAAAACGTTGGGATTACAATTCAATTTTTA
TAAGGTGTTTGATCATTAAAAAATTATTTTATTAAAATGGTTATGTGCAT
ATACCCCACCTATGTAATTCAATCCAATTTTTCTAGCAATGTTTACTGCA
AAACATCATCCAATACCAGGGTATAATCACCCAGCCGGTACACAACGTCC
AAACAACGTCCATTTGACATTCATAAGGTCCAAATAACGTTATTTGAACG
TTAAAACAACGTTTTGTACCAGCTGGGCAAGGAACTTAGTGGTTATGTTA
GGATTCTGTATAGTAATGATTGACAGATTAGCGTGAATATATTAATGACT
GGACGTCCATCTTCTATTATTTCTTTGAAGCGAGTTTCGTTGCCGCCTGT
ATATCCAATTTGCTATAAAAAACCTACAATATTCCGTCATAATTTTATTT
CTTTGAATCACTTAGCTAAATAGGATTGATAGAGCTTGAAGATTACTCGT
AATTCACAAAAGAATTATTCTCGAATTTTTTCATAAGTTTGCAACGTATT
TCGTCAACATTTTTCAACACTGAAATGCAGAATTTTAACTGCATGTATAC
TTTTGAATCACTTTTGTCGCTCCAATAATTGTTTTTTTGTGTGACTGGAA
AAACATAGTATGCCAAATTTGAGAG Coding sequence (CDS) from alignment at scaffold_374:24967..26741- >TCONS_00062927 ID=TCONS_00062927|Name=TCONS_00062927|organism=Clytia hemisphaerica|type=CDS|length=1170bp|location=Sequence derived from alignment at scaffold_374:24967..26741- (Clytia hemisphaerica)
CTTCAGGTAATTTTGGGCTATGGAGATCATGTGTATCATCTACATCGTTT
CGTAATGGCGTTAGAAAATGCACAGAAATTCCAGAGAAGCAGGTTAATCC
CAAATTTCAACTAACAAGAGGCTGTAATGTGATGGCAACAATTGCGAGTA
TCGTGGCAGTCATTATGGCTTTCATCAATATCACACAAAATGGTAACTCC
ATAAAAAATGGAGGTATTGGAATGGCTTGCGCTTCCGGTCTAGGAATTGT
AGCAGGAGTGATTTTTACAATATATCTTGAACATATTAAAGACGAATTTC
AAAATGGTTCATTTTTAGTATGGAAGTATGGATGGGCATATTTCTTGAAT
TGGGCAGGTGCTGGAGTTGCCTTATTTTTGGCTCTTATTTCACTCTATGA
CAGTCGAACGAAAAAAACAGGACCACCCGGAGCAATTAGGATGCCAGAAG
TAACACCTTAGATGGTCCAAGCGAAAAATGTTGTTTTCGTGATTTCTAGT
TGTGTAGTAGCTTTAGGATTATTTGCAACGTCTTGTGCAGGGATGGGTTG
GGCTTGGGGTGAAATGAATCTTAGCAATTTTCATGCTTCAGGTAATTTTG
GGCTATGGAGATCATGTGTATCATCTACATCGTTTCGTAATGGCGTTAGA
AAATGCACAGAAATTCCAGAGAAGCAGGTTAATCCCAAATTTCAACTAAC
AAGAGGCTGTAATGTGATGGCAACAATTGCGAGTATCGTGGCAGTCATTA
TGGCTTTCATCAATATCACACAAAATGGTAACTCCATAAAAAATGGAGGT
ATTGGAATGGCTTGCGCTTCCGGTCTAGGAATTGTAGCAGGAGTGATTTT
TACAATATATCTTGAACATATTAAAGACGAATTTCAAAATGGTTCATTTT
TAGTATGGAAGTATGGATGGGCATATTTCTTGAATTGGGCAGGTGCTGGA
GTTGCCTTATTTTTGGCTCTTATTTCACTCTATGACAGTCGAACGAAAAA
AACAGGACCACCCGGAGCAATTAGGATGCCAGAAGTAACACCTTAGATGG
TCCAAGCGAAAAATGTTGTTTTCGTGATTTCTAGTTGTGTAGTAGCTTTA
GGATTATTTGCAACGTCTTGTGCAGGGATGGGTTGGGCTTGGGGTGAAAT
GAATCTTAGCAATTTTCATG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00062927-exon-scaffold_374-1575043694:26547..26741 | TCONS_00062927-exon-scaffold_374-1575043694:26547..26741 | Clytia hemisphaerica | exon |
| TCONS_00062927-exon-scaffold_374-1575043694:24967..26130 | TCONS_00062927-exon-scaffold_374-1575043694:24967..26130 | Clytia hemisphaerica | exon |
| TCONS_00062927-exon-scaffold_374-1510915933:26547..26741 | TCONS_00062927-exon-scaffold_374-1510915933:26547..26741 | Clytia hemisphaerica | exon |
| TCONS_00062927-exon-scaffold_374-1510915933:24967..26130 | TCONS_00062927-exon-scaffold_374-1510915933:24967..26130 | Clytia hemisphaerica | exon |
| TCONS_00062927-exon-scaffold_374-1491911889:26547..26741 | TCONS_00062927-exon-scaffold_374-1491911889:26547..26741 | Clytia hemisphaerica | exon |
| TCONS_00062927-exon-scaffold_374-1491911889:24967..26130 | TCONS_00062927-exon-scaffold_374-1491911889:24967..26130 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_374 | supercontig | scaffold_374:24967..26741 - |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
| Term | Definition |
|---|
| IPR004031 | PMP22/EMP/MP20/Claudin |
Vocabulary: Cellular Component
| Term | Definition |
|---|
| GO:0016021 | integral component of membrane |
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
| Category |
Term Accession |
Term Name |
| cellular_component |
GO:0016021 |
integral component of membrane |
Blast
The following BLAST results are available for this feature:
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