TCONS_00062939 (transcript) - C. hemisphaerica

Overview
NameTCONS_00062939
Unique NameTCONS_00062939
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length208

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00062939 ID=TCONS_00062939|Name=TCONS_00062939|organism=Clytia hemisphaerica|type=transcript|length=208bp
GAATGGCAGACGACCTACCAACAGAAAATTGGATTTAGACAGGTGAGCGC
GTCCTCAAACCCCCAtgatgttatacatttttggaactGGAAGAGATCAG
CgatgattgttttttttgtctcaTTGACCCAATCAAATCCTACAAAAAGT
TATTCAGTTTTTTCTGGGAAAAAGCCACTTTTGAGGGCTTTAGCTGTCCT
CCCCGGCA
Run BLAST on NCBI

transcript from alignment at scaffold_374:27936..28143

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00062939 ID=TCONS_00062939|Name=TCONS_00062939|organism=Clytia hemisphaerica|type=transcript|length=208bp|location=Sequence derived from alignment at scaffold_374:27936..28143 (Clytia hemisphaerica)
TGCCGGGGAGGACAGCTAAAGCCCTCAAAAGTGGCTTTTTCCCAGAAAAA
ACTGAATAACTTTTTGTAGGATTTGATTGGGTCAAtgagacaaaaaaaac
aatcatcGCTGATCTCTTCCagttccaaaaatgtataacatcaTGGGGGT
TTGAGGACGCGCTCACCTGTCTAAATCCAATTTTCTGTTGGTAGGTCGTC
TGCCATTC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_039425XLOC_039425Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00062939-exon-scaffold_374-1491911889:27936..28143TCONS_00062939-exon-scaffold_374-1491911889:27936..28143Clytia hemisphaericaexon
TCONS_00062939-exon-scaffold_374-1510915933:27936..28143TCONS_00062939-exon-scaffold_374-1510915933:27936..28143Clytia hemisphaericaexon
TCONS_00062939-exon-scaffold_374-1575043694:27936..28143TCONS_00062939-exon-scaffold_374-1575043694:27936..28143Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_374supercontigscaffold_374:27936..28143 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
1.48438	4.3425	1.92616	12.4512	0	0	2.67117	1.78662	3.2018	1.54939	0	2.8327	0	0	0.842878	0	0	2.96969	0	10.8882	2.87036	0	1.70196	1.54733	0	1.42235	20.3538	10.861	1.64754	3.35717
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00062939 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
back to top