TCONS_00062947 (transcript) - C. hemisphaerica

Overview
NameTCONS_00062947
Unique NameTCONS_00062947
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1610

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00062947 ID=TCONS_00062947|Name=TCONS_00062947|organism=Clytia hemisphaerica|type=transcript|length=1610bp
agaaaaataataaaccaatgaaaatcaaaaagaacTTTCACTTTGAATTA
GAAGACCTTGTTAACAAAGAAGACAATGTTTTGAAAACACTTGATGTTAT
AATCCCCGAGaaAGTGGATCCGCAACATGGAATGTTCGTTTGGCCGTCAG
CGCCTGtgctttcaaaatttattttcaataatcaAGAGAATTTCCGAGAC
AAAAATGTGCNgctttcaaaatttattttcaataatcaAGAGAATTTCCG
ATACAAAAATGTGCTCGAGttaGGAGCAGGCACATCACTACCTGGCATCG
TAGCAGCGAAAATTGGTGCAAAGGTTACACTTTCTGATGCTAAGTTCTAT
CCTAACTGTCTCGAAAATTGTCGTCAAAGTTGTGAAGTCAACAATCTTAA
GACATCGATGGTTAATGTGATTCCGTTAACTTGGGGCTTGGTTGATGAGC
AGATACTTAACCTAGAGAATGTTGATGCCATACTGGGATCTGATTGTTTT
TACGACAGAAAAGATTTCGAAGATATCATTTTCACCGTTTCATTCTTACT
GAATCGAAATCCTTCTTGTGTCTTTATAACCGCTTACCAAGTCAGAAGcG
AAAAATACTGTTTACAAATGCTGTTGAAGAAGTGGGGTCTTATTGGGAAA
GAAATCCcattaaaatcattttgtaCCGAAGACGAACTTGTCAATCACAA
ACATGATATCGAATTGTACCAAATCACCAAAGCCTGATGAACCGATGATG
AACCAAACAGTTAATTGGTCGTTATCAATGCGTTGTGTCATACACTAAAA
CGACATGTCATGTGATAGTTACAAATTGAAGTGGAATGTCCACTCTTTAA
AGTTCAAAGAATTTAGATGGGAAAAGCTCTAAGGTGTCGATGCTTATATA
ACTCTTTTTTTATCGATGATTTATGTTTTGAGATTTCTAATAAGGAGGTG
TTACATATCAATCGATCCCAGCTGGAACACAACATTGttataacgttcat
ctaacgttcacaacgtccatttaacgttagatgaatgctgaaagaacgtt
gtgtgtcagctgggatgtTATATACATTACCATATGATCCCCGAAAGACT
TCGGACATATTTTGACATCTTGAGGCAAATGACCGTAATTCCATGGAATT
ATTTATTTGGAAAGTAGCTACTTAgcaagaaactaaaaatatgaggtatt
actttttaaatttttcttgtcgGTTCAtcattttgcatactttttttCGT
Atttgattgggcttttccagaaatagtccgtggccctcctgttgaggata
tcggatatccagatggttttaacgatttttgttcaaaagaggatatccag
ggggtaaagcaTCTACAAGGGAGCTGATATCTAGGTAGTTAAGTgttttt
tcaagttaaaaatacgatatccaggggtaagcatctttataagagaggat
atccagagggctcagcatatttttaagagtggatatccagggggtcttta
ccaataaagtaggatatccacggggttcgatacttcaaaaaatcaataca
cgtttttttttataagaacgtcgaaaattttgaaagcctTCCGATGTCct
aaattttttg
Run BLAST on NCBI

transcript from alignment at scaffold_375:43667..47151+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00062947 ID=TCONS_00062947|Name=TCONS_00062947|organism=Clytia hemisphaerica|type=transcript|length=3485bp|location=Sequence derived from alignment at scaffold_375:43667..47151+ (Clytia hemisphaerica)
agaaaaataataaaccaatgaaaatcaaaaagaacTTTCACTTTGAATTA
GAAGACCTTGTTAACAAAGAAGACAATGTTTTGAAAACACTTGATGTTAT
AATCCCCGAGGTTAGAGTTATTCTTTATTATAACTAATATAGCCTCTTAT
GTTGAGAAAgcaaaattaacaaaacaatataggctaatatcatatttttt
aaatgttttttagaaAGTGGATCCGCAACATGGAATGTTCGTTTGGCCGT
CAGCGCCTGtgctttcaaaatttattttcaataatcaAGAGAATTTCCGA
GACAAAAATGTGCNgctttcaaaatttattttcaataatcaAGAGAATTT
CCGATACAAAAATGTGCTCGAGGTAAAGTCAGTTTTTTCCATTTGAGATT
CCTTTAAGTCTAGTAATAAATAGTAATCACAGCTGCTCTATGGTCAGTTA
GACCTAGAGTTCTATCTATGTTCTTTGATCGGTCATAGTTTAGTTTTTTA
CTACATAATCActgtcgaaatatattgacagTTGTGGGTAACCTAACTGT
TTTCAGGATTTAACACTCGGGCGGCACTTCTACTTTGTTTcgttggattt
ttcgatttgagAGGGGGTTGAAcgtggtttctaggctatattctcagcgt
TATTGGAACATTCTTGGGCTCTTAGATCCTGCGATCCTAAAATGTTAAGT
CTAAGAATCTCGTTCAAACTCAGAATAAAAATTCTACTGTATTATTCCAA
ctgtactttaaagcactttaaAATCACTtatagttttgaaattttgattt
aagtATCAAATTTATTACGGTAGTGATTGTTTTGTAGTACAATGTCCTGG
TAGTTACGGTAGTCCTCTGTATATCGGAATGTCTGATAGGTTATTAATAC
CCAATCGAGTCTTTTCGTAATGTTTTGttaatttacgtaatttccgccat
caCGGATACAAACAATCGAATATGTAGAAGGAGGCGATTCATTGATATTT
ATCTAATTACTTGGCTATTTGACTGGATCGAGCTTCCCATTTAAAGGAAG
TGtgtctttttatatattttttattatggTCGAGAACCTAAGGTAAATTA
GAAAATAACATAGTCGACATTATTACTAGACACCCagttcatccgacacg
ctaaaagctctgaaggtcggttAAATTTTCAACacctggaaggtttagat
tacggaattttgcaagaccgcgtcaaggatttgGCAGCGGGAGgcctggt
aacccagccctcttTTTCACGGATTGGCGGGTTTAACCGAATTATTTTTA
GGTTTAAGTGCAAGGGTAGTTGAACCTGACCGTGGATGCGACACATAAGC
TGACTACCAATCTTCTCCGATGAGAAATTGGCCCGTTCCTTTAATTCTTC
AGCGTGGGCGGCCGCTAATCCGCCTTCGGAACATCAGATAAAGTAAAGGG
ATATGGTAACGGTGAGGTGAACCGTTACGCAAATCGAGGGCTCGCTTTCA
TAATGATATAAAgccctttttcttttgttttcagttaGGAGCAGGCACAT
CACTACCTGGCATCGTAGCAGCGAAAATTGGTGCAAAGGTTACACTTTCT
GATGCTAAGTTCTATCCTAACTGTCTCGAAAATTGTCGTCAAAGTTGTGA
AGTCAACAATCTTAAGACATCGATGGTTAATGTGATTCCGTTAACTTGGG
GCTTGGTTGATGAGCAGATACTTAACCTAGAGAATGTTGATGCCATACTG
GGATCTGATTGTTTTTACGACAGAAAAGGTGGGTCAGTTAGAAAGTTTTC
ACCGAAGTAAGTAAAACCAGAAATTAAACTGAATACTTTTCTATAGTAAA
GCTTATGAAGAAACTATACCCTGCGTGATTGATAAGAGCATTTTCTTGAT
GTGATGTCTTGATGAAAGAATATTtccggcgtgatggcgtgattgatACA
TTTTTTTGGCATAGTGGCGTCATCATGGATACTGCTGAGCGATCGTCTAT
ACTTGAATTTTTCTATCTCATAGTTCAGATTATCTTCTTTGGTTTTATAT
GAGTTTACTTTATTATCATCTTTTCGTTTTACCTTTAGATTTCGAAGATA
TCATTTTCACCGTTTCATTCTTACTGAATCGAAATCCTTCTTGTGTCTTT
ATAACCGCTTACCAAGTCAGAAGGTATGTCCATTATATTATAttacgctt
aaatcggaactctcccattcttGCANAAGTCAGAAGGTATGTTCATTATA
TTATATAACGCTTAtaatcggaactctcccattctcgcgtgaagcttttt
cgctagcgacaaaaatgtcctgggtgaaaaagtttttgaaaaaatattta
gcGGTGGGAGACgcaacttttgaaaaagttttctatTTATTCCAGCAAAT
TTTCAACTATATTTAAAGATACAAGCAATTTCAATTAAAATGTCACTTTA
CTTgcgatgtttttattttccagcGAAAAATACTGTTTACAAATGCTGTT
GAAGAAGTGGGGTCTTATTGGGAAAGAAATCCcattaaaatcattttgta
CCGAAGACGAACTTGTCAATCACAAACATGATATCGAATTGTACCAAATC
ACCAAAGCCTGATGAACCGATGATGAACCAAACAGTTAATTGGTCGTTAT
CAATGCGTTGTGTCATACACTAAAACGACATGTCATGTGATAGTTACAAA
TTGAAGTGGAATGTCCACTCTTTAAAGTTCAAAGAATTTAGATGGGAAAA
GCTCTAAGGTGTCGATGCTTATATAACTCTTTTTTTATCGATGATTTATG
TTTTGAGATTTCTAATAAGGAGGTGTTACATATCAATCGATCCCAGCTGG
AACACAACATTGttataacgttcatctaacgttcacaacgtccatttaac
gttagatgaatgctgaaagaacgttgtgtgtcagctgggatgtTATATAC
ATTACCATATGATCCCCGAAAGACTTCGGACATATTTTGACATCTTGAGG
CAAATGACCGTAATTCCATGGAATTATTTATTTGGAAAGTAGCTACTTAg
caagaaactaaaaatatgaggtattactttttaaatttttcttgtcgGTT
CAtcattttgcatactttttttCGTAtttgattgggcttttccagaaata
gtccgtggccctcctgttgaggatatcggatatccagatggttttaacga
tttttgttcaaaagaggatatccagggggtaaagcaTCTACAAGGGAGCT
GATATCTAGGTAGTTAAGTgttttttcaagttaaaaatacgatatccagg
ggtaagcatctttataagagaggatatccagagggctcagcatattttta
agagtggatatccagggggtctttaccaataaagtaggatatccacgggg
ttcgatacttcaaaaaatcaatacacgtttttttttataagaacgtcgaa
aattttgaaagcctTCCGATGTCctaaattttttg
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_039432XLOC_039432Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00062947-exon-scaffold_375-1491911889:43667..43776TCONS_00062947-exon-scaffold_375-1491911889:43667..43776Clytia hemisphaericaexon
TCONS_00062947-exon-scaffold_375-1510915933:43667..43776TCONS_00062947-exon-scaffold_375-1510915933:43667..43776Clytia hemisphaericaexon
TCONS_00062947-exon-scaffold_375-1575043694:43667..43776TCONS_00062947-exon-scaffold_375-1575043694:43667..43776Clytia hemisphaericaexon
TCONS_00062947-exon-scaffold_375-1491911889:43880..44038TCONS_00062947-exon-scaffold_375-1491911889:43880..44038Clytia hemisphaericaexon
TCONS_00062947-exon-scaffold_375-1510915933:43880..44038TCONS_00062947-exon-scaffold_375-1510915933:43880..44038Clytia hemisphaericaexon
TCONS_00062947-exon-scaffold_375-1575043694:43880..44038TCONS_00062947-exon-scaffold_375-1575043694:43880..44038Clytia hemisphaericaexon
TCONS_00062947-exon-scaffold_375-1491911889:45201..45444TCONS_00062947-exon-scaffold_375-1491911889:45201..45444Clytia hemisphaericaexon
TCONS_00062947-exon-scaffold_375-1510915933:45201..45444TCONS_00062947-exon-scaffold_375-1510915933:45201..45444Clytia hemisphaericaexon
TCONS_00062947-exon-scaffold_375-1575043694:45201..45444TCONS_00062947-exon-scaffold_375-1575043694:45201..45444Clytia hemisphaericaexon
TCONS_00062947-exon-scaffold_375-1491911889:45755..45839TCONS_00062947-exon-scaffold_375-1491911889:45755..45839Clytia hemisphaericaexon
TCONS_00062947-exon-scaffold_375-1510915933:45755..45839TCONS_00062947-exon-scaffold_375-1510915933:45755..45839Clytia hemisphaericaexon
TCONS_00062947-exon-scaffold_375-1575043694:45755..45839TCONS_00062947-exon-scaffold_375-1575043694:45755..45839Clytia hemisphaericaexon
TCONS_00062947-exon-scaffold_375-1491911889:46140..47151TCONS_00062947-exon-scaffold_375-1491911889:46140..47151Clytia hemisphaericaexon
TCONS_00062947-exon-scaffold_375-1510915933:46140..47151TCONS_00062947-exon-scaffold_375-1510915933:46140..47151Clytia hemisphaericaexon
TCONS_00062947-exon-scaffold_375-1575043694:46140..47151TCONS_00062947-exon-scaffold_375-1575043694:46140..47151Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_375supercontigscaffold_375:43667..47151 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
9.42236	7.95144	10.3532	13.1958	2.28457	2.33152	2.17839	1.98888	1.8714	1.86123	1.23826	1.63094	0.61654	0.705901	1.88071	1.8143	3.82177	2.46077	1.05803	0.681521	1.59705	1.51847	2.71039	2.60924	3.13766	3.30295	2.55369	1.3283	1.94125	1.6687
Blast
[Close]
BLAST of TCONS_00062947 vs. Swiss-Prot (Human)
Match: MET23 (Methyltransferase-like protein 23 OS=Homo sapiens GN=METTL23 PE=1 SV=3)

HSP 1 Score: 152.91 bits (385), Expect = 8.877e-43
Identity = 82/206 (39.81%), Postives = 122/206 (59.22%), Query Frame = 3 
Query:  132 MFVWPSAPVLSKFIFNNQENFRDKNVXLSKFIFNNQENFRYKNVLELGAGTSLPGIVAAKIGAKVTLSDAKFYPNCLENCRQSCEVNNLKTSMVNVIPLTWGLVDEQILNLENVDAILGSDCFYDRKDFEDIIFTVSFLLNRNPSCVFITAYQVRSEKYCLQMLLKKWGLIGKEIPLKSFCTEDELVNH-----KHDIELYQITKA 734
            M+VWP A                  V L+++++ ++ +   K +LE+GAG SLPGI+AAK GA+V LSD+   P+CLE CRQSC++NNL    + V+ LTWG +   +L L   D IL SD F++ +DFEDI+ T+ FL+++NP     + YQVRS  + L+ LL KW +    IPL+SF  + E +       +H +E+  I+ A
Sbjct:    1 MYVWPCA------------------VVLAQYLWFHRRSLPGKAILEIGAGVSLPGILAAKCGAEVILSDSSELPHCLEVCRQSCQMNNLPH--LQVVGLTWGHISWDLLALPPQDIILASDVFFEPEDFEDILATIYFLMHKNPKVQLWSTYQVRSADWSLEALLYKWDMKCVHIPLESFDADKEDIAESTLPGRHTVEMLVISFA 186
The following BLAST results are available for this feature:
BLAST of TCONS_00062947 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
MET238.877e-4339.81Methyltransferase-like protein 23 OS=Homo sapiens ... [more]
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