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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00062979 ID=TCONS_00062979|Name=TCONS_00062979|organism=Clytia hemisphaerica|type=transcript|length=494bp
GAATGTCAATTATGCCATCATTGTTTGGACGACACCATGAAGATGTTGTT
ACCGAAAGCGTTCCGTGAACACTACAATAAAGGATCGTACCGTCGCTTAC
TACCCATTCCCTTGACTTCTACAGGAGAACCGCTTATTCCAAAATCTCAA
CCCAAAGGCCAATATAATGATTGGTTATCATCTTGGTTCCAAAAGAAATG
TAAAGAAGATATTTCCTGGTGTCAATAAAAAGCAAGAACAAATACCAACG
GCAGACTATCAAGCCTTTGCTACCAACACCACCGCGCAACACATTCCACC
TGCATATAACACTTCTACCAATACATTGTCAcattttcaacaacaaaatg
aGATGGCTGCTATGTACAGTCCGCCTGGTGACCGCCCTTCACCGTCTTTC
CGTATAGAAGACATTTTGGTACAGAAAGGGCAACCGTACGGAGGAATGTA
CTCACCAACATCTTTCCAACAATATGGAGGAGGATATCACCCCG Run BLAST on NCBI transcript from alignment at scaffold_375:278102..283501- Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00062979 ID=TCONS_00062979|Name=TCONS_00062979|organism=Clytia hemisphaerica|type=transcript|length=5400bp|location=Sequence derived from alignment at scaffold_375:278102..283501- (Clytia hemisphaerica)
GAATGTCAATTATGCCATCATTGTTTGGACGACACCATGAAGATGTTGTT
ACCGAAAGCGTTCCGTGAACACTACAATAAAGGATCGTACCGTCGCTTAC
TACCCATTCCCTTGGTAAGTTTAGAATCCATGATTATTATATTGTAAGAC
CCACTGACCTTTATATACCCTGGACCAATTTACTCAATCCCGGCCAAACA
AAATCTTTGATCGGAGTTCTTTGAAAAGTGGTACCCTAATGGCGGCACTA
CTTAAGGGCTCTGACCATAGTCAGAAAATTGATTTTAGTATCTGAACATG
AAAGTTATGTTTTAGATTCTTTAACACTTTTAACAAAGAAGCATTTACAA
AGATTTTCCGCAAAAATTTTTATTGTTTGGTAAAAGATACACCATCTACT
GCGAAAAATTTTTCAAAATGTTTTTTTTTCGCCGAAACTCTTTCGCGAAA
GTCTTCATTTTCTTCTTCATCAAATTTTTTCAATGCAATTTTTGAATTTT
CAGATTCAGGAATAGTTTGTCTAACAGAAAATGTATAACATATCATACCA
TAGTTTTGTTGGTTACATCAGTCAGAAAACACATTTTAAACACGGCAATT
ATGAAAAATTCACTATGGTCAGAGCCCTTAATAGCGGTGTAAACGCATCG
AGAGCGCTAGATCTACCCTCCCTCGAAAACTTTTGATGATGTAGCGCCAT
TAGACGTTAATTTTTAACACTGCAATGGCTTCTTTACGGGTACCAATTCG
AAAAAAGTTTCGATCAAAGATGGTGGATATAGCTTGTTCCAGGGATATAT
AAAAGTCAGTGGTAAGATAATGTTCGTACGTGACGGTTCCCTTTCGATCC
GAAACGAAATGAAGTCATTCTATCGGCCAGAAGTGACACGGAACCGTAGC
GTGTGTACATGGTCTAAGATAGTGTCGATGTTTTACGTAGATAGCCCAGT
AATCTAAGGCTTTTCTTTGACAACTTTCACGGGATTCGCGACCAGCCGGC
CTGACTATTTCTATGAACGGAACATTGGAAGAAGCGAGTATTTGAACCGC
GAACTCCCGGATTGAGACGTTGACTTCTTTGACAATTAGCCGTCGCTCCT
TTAAAGATCATTTTTGCTTTCGCTGTTTAAATCTCACATTTGTAAAAAGT
GCATCACTTTTTATGAGAGCTAGTAAATTCTTTCCGAGGCTCGGTTGTTC
TTATTTTATGGCACTTTTATATTTTTATTATCCTATTCTTATTTTTAGTA
TGAAATCTTGACCTTATACTTCATTTCTAATACTTTACTTTGACCCTTGA
TTTTTCTCATTTTCTGGCGTTTTCAGCCTCATTATTCTTATAAAATTTTT
CTGATGAAAAAGGTGTAGCACTTTTACTAATTCAACGGCCGGTGTCAAGG
AAGCAAATTTGTTCTATTACCGTTAATTGTATGGTGTCCGTAGTCGAACA
AACTCGGCAGTTGAAATCCAATTTATAGATTGCGTTTTATTCTATTGCCA
TAATGCTGGTTTAAAACTTAGATAATTTCTTTTTTACCAGACTTCTACAG
GAGAACCGCTTATTCCAAAATCTCAACCCAAAGGCCAATATAATGATTGG
TTATCATCTTGGTTCCAAAAGAAATGTAAAGAAGATATTTCCTGGTGTCA
ATAAAAAGGTTAGTTTTCTCGGTTAAATTTGCCATGACCAAACAACATAT
GAAGCCACGAGAATCGAAATATAAAGGGTTGAGCTATGCTTTAATACACT
TCAAGTCCCTTTTTTACATGGACCCAACTCGATTCTACCATGCATCAACT
CGTTTAGTCAATTTTAAGTTTTGTATTTATTTATTATCACGCATTTTTTA
TTGTTTTTAATTTTCTAGTTGCTTATAACAATTTTTTAACGACATGTAAT
TTTTTTAAGATAGGATTTTAATGAATTTGGAAGACGTATCAAGGAGCGAG
TGAGGCTCACAGGATAAAATTAGTGCGATCCTTTAATTTGATATGATATC
TGAGTCACAAGATTGACCTATGGGATCGACTCCTTCATTTATTGACCAAC
TTCTTGATGAAAAGAAGGTGCTAATTTTTAGAAATCCATCAATATGTGAT
TGAGGATTAGGACGATTTATTGTTGATCTGTTCAGGCCAACCTCCTTGGT
TTATTTGGCAATTGTAATGTTTCCACTGTTTTAGTGAATGTTTTGTTTTG
AACAGCAGGAGTGAAGGTCTTTGGCTGGAGGTGTTAATCCAATCATATGG
TTTACTTCATCAACCAAACTCAAACAGTTTCGTCATCAACTATATCCCTC
TCTCCTTCTCTCCCATGGCCTAATACAGTGATATGTTTTTAGGGGTAACG
CCTCTTTAACGAGATGGTTTAGTTTTAGGGAGTTTTTGTAAATTGTCGTG
TCAGCAAGAGGGAAGATATAAAACAAAAGCTAATAAGTTTGATAAGTAAT
TTTTCGGGTTTAAGAACCACCACGTAACACTTTTGCCACTTGATTCTGCA
CAACGGATGATAAAGTATTATAGCACCGTTTTTTATTTGGTCCCTCTCAC
TCGATTCCATTATGTTGTTATTTTTTGTGTCAGTCAATCGTCACCTGATC
ATCATTAGTCGAATGTACTCCTATGACTTTCTCCCAAACCTTTTCTTGAT
CTCAGCATTTTTTCCATAAAAATTAACTTCAAACCCTAATTTTAGAGAGA
CTTTAGCCTTGTTATGCATAGTTTTTGGTCTCAGATTTATGAAACAGCTA
TGTGAACGGTAGTTTCGGCTGAAATTTGTAGTTATTCGGTTACGTTAAAC
TTTAGTCAGTCATTAATTGGTTGACTCTGGTTGTAAATTTACATATACTG
CTGCTGTCTTAGAGATAATATCACGGCCCCAGAAATGTTTTCGTTACTTT
CACCCATACAGAAAATCGATAATCCCTCTAATCATAATCATCATTATTAT
GGAATGAGTTCATTTTGAAGAGGGAAGATCTATTTCTCTTCAGAATGGAA
CATTTGATACAATGATGGCGTCAGATCTCTCTCCAAACACTTGATCACAA
TAAAGTTGACCTTTATCGCAAATACTTCACTTTTCTCAAATTTCTTTTCT
CTACCCAATTCTCATTGCATCATTATGTAAAGCTTGTTTTGAATGACAAA
ACGTACTTCGTTTTTATGCCTAAACCACGATTCCTTCCTAAAGTCCCCCT
CAATCAAGCAGCAAAAAAGAAGTGTTTTTGAAATGAGAAAATTTCACGAA
ACAAAAAAATCCTGTTACATCCTTGATAACTGTTCACTACTTCACCAAAA
ATAATTCTACTACGTTCTTTCACGAACAGTTTTTTTTGAAGACCGGAAAT
CATTGAACGTTAAATCAACATGGCGGATTAGTAGCGTGATACCTCAAACA
CATGTTTTGCGGTTGAAGAGGAGGAAGTACTGACATACTCCCATCACATT
TCTTGAATGTTTCTTTCTCCCATACATCCAAACGAGGCTGTGTCAAAGTG
ACGTTCATGGACGGTCAAAATAATCCATTGGAATGAGAGCCATCGCGCTC
CAATAAAGATTTTAAATTGAACCAGATTTCCAGATTTCGAATATTTCTAC
GCGTGACCAACAGAAAATCGTTACTAGGGCACAATCAGAGGGCACAGCCA
GTCTTAGTTCCCCAAGATTCATTGCGACTGATAAACGACCTTTACTCTTG
TCTATGAAAAGCACAAGGGAGGTACGTGAGGCTGTTCTGGATCTGTCATT
TCTGCATAGTTTGTGTTTTCACGTCGTAGATACTCTCGGGTACCTAATAG
GCCATTTCACGGTCGAAATGGATCATGGGTAATCAGGACTGATTGCGCCT
CCATTACGGCTTCCCNTTAGGTACCCGAGAGTAGGCTGTGGATCATAAAC
TAATTAATCTTCCTTGATTAGCCTAAATGATAAATCTTTGGTTGTTTGCA
GATGAATTTATTGCGAGCTTTACGAGACTGAGACGGACTTTATTATTGTC
TACAAGACGAGAGGATTTCGTCAAAGTTCTCTGACTCATTTAAACAACCT
AATCCGTCCTTCATTCCTACTAATAGCTTTAATATTGATCACTGATTAAG
GAGCTTTAACTTCTAGTCAGTCAGCTTTCACCAACAACTGAGCGGACTCT
CATATGAGATGACTGATTGGAGCCTCCATCATTTATCATTTTTCGCACGC
AAAAATGTCCTCAAGTCAACTTCAATGTTGATTTTATGAGCTGCCATTTG
TAATGCTTTTCATCTTACCGCGATACAAATAAAAACTCGCAACATGAAAA
GTTACTTTTTTAAGAATCATCCAAGCCAACAAGCATTTTGTGTGAAACGC
AAATATAAATTTATTTACAAGCGCCTCCTTTGAACGTTGTGACGTCACAA
ACATTCTGTTGGGATTCTTGAAAAGAGACATGATCCAACCAACTAACACA
GCGCTTTGTAAAAGGGAAAGAATTCTTTGCTCAGCCTAATCCCAACTTCT
TTTCAACTTTCATTTCACTTTGAGTAAATATAACTTTTTCATGGTGTAGT
GAACTTTTAAAAAAGTTTTAAAAGTCTCGGTCACTAAAGTTTCATTTCAG
TTCTTACATTGGGGGTCACTCAAGGGAAAGGTTTATGTGAGAGAGAATTT
GAGTCAGTAAATACCTGTTTGAGATCACAGGAGGAAGGCTTTCTTTGAAT
TGTTTGTCACCTTGTTATTGTTCAAATCATTTTGTCAACAATGGCGTCCC
ATTGAAGTTGTTACAAGATTTAAAGATAAATCGGCGCTCTATCGTATTGT
TTCAAATTTGAATAATATGACACTGAAGTCAAACAAATAAAGAGACGAAG
TAGAGACAAAGAAATAGTAACTTTTTTTGTGCAAACGGCTTGTGAAGATA
TTATTTACCAGTTAGGCAAGAAGACATTAGTAAATAAAAACGACATCTAA
AAGAAAGGTCATCGCCATCATCTCATCTTCGTAAAGAGAAATTTCATCAA
ATCTTTCGGCGGCGGCTGTAACTGAAAGAGAGGGAGAGAAATTAGCTACC
GATTATAGCAAGACAATTAGAGTTAACATACGATCATCTATCTGACTTGT
CAAGCATGTATTGTCACCAAAATGAATATATGTTCCAGCAAGAACAAATA
CCAACGGCAGACTATCAAGCCTTTGCTACCAACACCACCGCGCAACACAT
TCCACCTGCATATAACACTTCTACCAATACATTGTCACATTTTCAACAAC
AAAATGAGATGGCTGCTATGTACAGTCCGCCTGGTGACCGCCCTTCACCG
TCTTTCCGTATAGAAGACATTTTGGTACAGAAAGGGCAACCGTACGGAGG
AATGTACTCACCAACATCTTTCCAACAATATGGAGGAGGATATCACCCCG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00062979-exon-scaffold_375-1575043694:283388..283501 | TCONS_00062979-exon-scaffold_375-1575043694:283388..283501 | Clytia hemisphaerica | exon |
| TCONS_00062979-exon-scaffold_375-1575043694:281844..281961 | TCONS_00062979-exon-scaffold_375-1575043694:281844..281961 | Clytia hemisphaerica | exon |
| TCONS_00062979-exon-scaffold_375-1575043694:278102..278363 | TCONS_00062979-exon-scaffold_375-1575043694:278102..278363 | Clytia hemisphaerica | exon |
| TCONS_00062979-exon-scaffold_375-1510915933:283388..283501 | TCONS_00062979-exon-scaffold_375-1510915933:283388..283501 | Clytia hemisphaerica | exon |
| TCONS_00062979-exon-scaffold_375-1510915933:281844..281961 | TCONS_00062979-exon-scaffold_375-1510915933:281844..281961 | Clytia hemisphaerica | exon |
| TCONS_00062979-exon-scaffold_375-1510915933:278102..278363 | TCONS_00062979-exon-scaffold_375-1510915933:278102..278363 | Clytia hemisphaerica | exon |
| TCONS_00062979-exon-scaffold_375-1491911889:283388..283501 | TCONS_00062979-exon-scaffold_375-1491911889:283388..283501 | Clytia hemisphaerica | exon |
| TCONS_00062979-exon-scaffold_375-1491911889:281844..281961 | TCONS_00062979-exon-scaffold_375-1491911889:281844..281961 | Clytia hemisphaerica | exon |
| TCONS_00062979-exon-scaffold_375-1491911889:278102..278363 | TCONS_00062979-exon-scaffold_375-1491911889:278102..278363 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_375 | supercontig | scaffold_375:278102..283501 - |
Blast
The following BLAST results are available for this feature:
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