TCONS_00062983 (transcript) - C. hemisphaerica

Overview
NameTCONS_00062983
Unique NameTCONS_00062983
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1689

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00062983 ID=TCONS_00062983|Name=TCONS_00062983|organism=Clytia hemisphaerica|type=transcript|length=1689bp
CGTTACATAGGTTTTTcacttcaaaagattttttttaatgtgaGAGAAGA
TACAGTAAAAATTACTtcagcttcaaaagttttgataatTGTTCGACGCA
CTTTTGGTGAACTGGGATTGATTTCCTTTGTAAGACCCATTTTGGGGAAG
CGAAAACAGCGattgataaattttgataaagaatACGATAGAAAGTCATT
GTAAATTAGGGAATTAAGTGAAGACTTGTATCCCAGATGTGAAGATAAAC
GGACTTTCTGACTTGACCAACGAATAAGATGAACATTGGTAGCAGTGGAT
ATGGCGGGAATTTTGGTGAAACACCGCGTTATGGTGACATGGACCAAATG
GAGGATGAACCGGttgaaGAGAAACCAGCGATCGACGAAGATGAATGGAA
ACGAAGAGTGAATGAAGATCTGGTTGAGAGCTTTTCCATTTTCGACATTG
ATGGTGATGGGGAGATTTCCATCTCAGAATTGATGTCAGTGATGGCTTCC
GTTGGAAATGACATCTCAGCCGAAGATGCTGAAGATATCTTTGATGTCGT
CGATTCTAACGGTGACGGTAAAATAAGTTTTGATGAATTCAAAGAATGTA
TGTATGAGAAGATGTCTCAACAAACGGTGGACGAAGACCTCATCGGAGCC
TTCGAAATCTTTGATGAAGACAAAGATGGTTACATTTCGCCAACAGAAAT
ACAACTGTTATTCAAGAAACTCGGTGAATTGATCTCCACTGATGAAGCTG
TTGAAATTATGAAAGATTGCGATCTCAACAAGGATGGTCTAATCGATTTC
GAAGAATTCAAGGCATTCTACTTGAAGATTTTCGAGAACCAACCAACTCT
CGCTGAACAACTGGTTGCTGAAGCGGAAGCAGATGAAAAGCAAAAAGTCG
CTCTTGCAATGGAAGAAAAAGAAGCGAGTGGATATCCTCAAGGTGAAGCA
CCCTCACCCACAGATTACAAATGATGATGTGGTGATAGAGAGTTTACTCC
TTTGTTGGTTCCGCGTGGTGCTGTTGTGCGCATGCGCGAGGTTGGTCGGA
TTTGAAGAAGTTCGGCGTGACATCATTTCATTGCGGATTTGATCAAACGG
CCCTCATCTGCGGTATACTAACGGAAAGTTACAGGCCCGTTGAGTGATAA
AGTGTCGGAAGAACGAACGATCTTCTCCCATAACCGGCCCTCGTGATCGA
ATTCGAAACCAGATTTAATTTGTTGGGAAAATGTGATACGAACACAACAG
AAAATTTGCTAAGATTTGATTTACCGAAATTTCATGATTTAATGACTTGT
TATAtaggttattttttcataggACTTCTTAAGTAGATAGCAGTGCTAGG
ACAATTTGTTATTTTGATAACTAATCTTGCATCATAGCTGAAAGCCCCCT
GATTTATTAATGGGAGcgatgaaatttattttgattttgaatttcaCCAT
TCCCAGGCCGAAATAGTAACCTTCAGTATTAACTGCAATCTTTATCTGAT
TTAGATCGGTTACTAATCATAAGCTTGAAATGCTTATAGCGCTCGCTGTT
TCGGCTTATTTGTTATCGATGGATAAGCTTTCTCATATATAGTTATTCAT
CTTGAACTTAAAATTGTGTATATTTTTGTATGAATATTATTtgcatattt
tgaaaatatgatccttttttctaaaaaaagaaaattttg
Run BLAST on NCBI

transcript from alignment at scaffold_375:303611..309134-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00062983 ID=TCONS_00062983|Name=TCONS_00062983|organism=Clytia hemisphaerica|type=transcript|length=5524bp|location=Sequence derived from alignment at scaffold_375:303611..309134- (Clytia hemisphaerica)
CGTTACATAGGTTTTTCACTTCAAAAGATTTTTTTTAATGTGAGAGAAGA
TACAGTAAAAATTACTTCAGCTTCAAAAGTTTTGATAATTGTTCGACGCA
CTTTTGGTGAACTGGGATTGATTTCCTTTGTAAGACCCATTTTGGGGAAG
CGAAAACAGCGATTGATAAATTTTGATAAAGAATACGATAGAAAGTCATT
GTAAATTAGGGAATTAAGTGAAGACTTGTATCCCAGATGTGAAGATAAAC
GGACTTTCTGACTTGACCAACGAATAAGATGAACATTGGTAGCAGTGGAT
ATGGCGGGAATTTTGGTGAAACACCGCGTTATGGTGACATGGACCAAATG
GAGGATGAACCGGTTGAAGTAAAATATTTTTCTTTTGGTATTTTTAGTCA
TCGAACTGTAAATGGATAGTGGAAAAATATCTCCATTAGATGATCCATTT
AAAAAAAGAAAATCTCAAAATTTTAGTGAAAGCTGTGGAATTCGTTAATT
TTTAGACATCCTCAGAAAAATCTAGATATGTCAATTCCAGGCCCTTTTTA
GAGTTCACCCTTAGTACTAGAGTTTATCATTTTCAATACTTTGCTGACCT
CTGATACAGTAATGACAGATCTTAATAGCTTACGACCTTTATAACTTTCC
TTAACTCCTCTCAGATCGCAACACTGCTCGTTTCTGGTACTTCTTCAATT
TTAATAACAACGAAAGATCAAGACAATAATTCAATTTCTTGGTTACCTTA
CTTAGTAGCTACGAGTTGCCCCTTCGTTCAACAAGGTTTCAACCAGACTG
AAAAAGCATAAAAAAGATACTTTTCTCAGTTTGTAAGCAACATCATGCAT
AGAGAAAGAAAAAAAAAAGGAAATTCATAAGGAAAATTAGTTTTCAAACA
ATCATGAATTTCAATTTTGCACTGAGATGAGCTCGATGTTAGGTACATTG
ATTTTCTCGCTGTTGGCCTTACTGCGTTAATTGATAAACTGAAATTCCTT
TAACAAACTTTTCATTTGTGCTCTGTGAATTGTTTCAAAAGAATCCTTTT
ACTTTGTGATAGCTTTTCACCTCGCTATGTATTATGTCCAAATCGTGGGA
CTGTGTCAAAAAAATTTTAATCTTAAATCACAAAAAAGTTTTGTCTATTC
AGATGGTAGAGTTTATGTTTAAGTGGCGAATTTGAGGATTTTTTGTTTGT
GATGACTGTACAGGCTTACATGCAATTGTTGTTCTTGTGTCGCGTTTAAT
CCAGTTTGACTTGTTTTTGAGTTTTTTTTTGGTGTATTTTATGTCGACAA
AAATTTGCAAAATTTCAGTCTGTTGAATATTCACGAGTACTGGATAGCTT
GTGGTAGCTTTGCATATTTTGTCACGAATTTTCTCGGTTAATTCCTAAAA
GAAAAAAGTTGAAAGCTGCTCTGTATCCAACACTTGTCATTTAATCCAGC
TCAAAATAGTTGTTTTTGATGATTTTCAAGAACTTTTAGAAATAAATCTA
TTGCCCTAACACAAACTTTGTGGGAGGAGTACTCGAGAAAAGTATTTTGG
GTTTTTGAATACTTTTATAATTGTGATCAATTTCAGATACTACAACTTTA
CTTCGCAGTTTTTTCGACGAATAAGTAGAGTTGTTTTTGTTGTTGTTTTT
GTAGAATTGAAAAGGAAATTTATCGAAACTTTGTTGTAACTTTTTTTTGT
TGATAAAAATGGCCACCAATGGATACTCACTACAGACGAAAACACGTCGA
AATTCTGGCCCTGCAGTTTTAGTCTCTTTGAAATTCAAGCAAACAGCGAA
AGCGAAGAATTTAGGTTTACCTCCTCTTGTGAGTTTGAACGGTTTTTTGC
AAGAAGGAACTTCTTCATCTGCACAAACAGATGAAAAGTTGGTTATAAAG
GTAATGGTTTGCTTATTCGTTTGAATCATGGTTGCGCAGTGTGAACAAAA
TTCTGATTGTCTCAGCAATAATTTTTCAGTTTTAGATCGATTAAGTCAAG
AAAATTATACAGTAGCGCAAGACTCTGCAAGAAAGGCAATGTGTTTGCTC
TGTTATCTTTCCCGAGAAAAAGTAGCTTCAAAGCTTTTACCGTTTCTACT
GTCATTCTTTCCAAAAATTCTTTTTTCCACCTTGCTTTTTTATGATACTG
CTGACCTGAGATTTTCGGCAGTAATTGATCGATTTGCTTTCTTTATAAGA
AGCAAGTGAAATTTTTAACGTTTTTATTTTCCAGCACTTTAACGTCTTTG
CTCTCTCGTCAGATCTTAAATTTGTGTGTTATTATCATAGTATTCCATTT
TCTTTACAAACTAACAAACTAGGCTCAAAAACGCCAACAAATGAGAGAAA
AAATAAGCTGAGCCTGGAATGGCTGAGCAAATAAACTAGGCTTAAAGAGC
TGAAAAATAGGAACAGACGAGCCTCAATAAGAATTTCATGTTCTTATAAA
AAAGAGTGTATCTGCATTAAAATATCAGTCCATTCCCTCTGATTTTTTGG
CATTTTTGCTTCCTTCTTCGTTATGAAATTACTCCAATAAAAAAGACTAC
AAATGTTCTTATCCTTTGATACGTGCCTGAATCACTGAAAAAAGGGGGAC
AATTTGTTTGAAAGTAGTATGTTGGTGTCAGAACCTTTAGCAACAATGGC
ATCCTTTTCTATGTGTTAGCATGACGTCATCATGTCATTGTTTATGCACA
GCTTGNGTATGTTGGTGTCAGAACTTTTAGCAACAATGGCATCCTTTTCT
ATGTGTTAGCATGACGTCATCATGTCATTGTTTATGCACAGCTTGAAATG
TTACGAGTTATTTCTGCGTGGGAATATTGTGGGATGACTATTTATACCCT
CTGTTTAATAAAGATTCCGTTATGTTTATGAAGTGGAAGAAATTTTAAAA
CTTTTCGACATTGAACGTTTATAAAGTCAAGACCGCATCCTCGTCGTTTT
CCTTCAGCCCCTAATTTGCTGGAATTTTCATTTGCCTTGATTTTAGTAAG
TCGAAAATAGTAAACAATTTAAGTGAAAATTACCAACGAATATTAGGACC
TTCTTCAAAAATAGTTCTCTTTTTTTCACAGGAGAAACCAGCGATCGACG
AAGATGAATGGAAACGAAGAGTGAATGAAGGTAAAGACCCGTTTCATTTG
CAAACCTAACTTCTCATTATTTGCCACAAGTTTTAATTATTCTTGCACTT
TGAGTTCAACTCATATTGTAGATTCCTTTATTCGAAAAGATTTTCGGTAC
GTTGTTTTACTTATCGCATTTCTGTGCTTCCAATCAATCCGATTGGTTAA
ATCTCAAAACAATCCAAATCAACCAATCAGGTTTCAAAAAAGTGATTTGA
TTGTCGAGGCGGACTTTTGGATGATTGATCGTAAGTACGGTACTTTTCCA
ATCAGTACGGTACTTTTCCAATCCCTTAAAAACATTTTAATTTGTTGTGA
TCTACTTTGGTCTAATTTTCTTAAATATTACATTTTCAAGGCTCTACAAA
GCCTATGAATTCTCATCATGAATTTTTGGCTTTCTGTGCTCATCATTAAA
AATGCTGATTTTTCTTCTGCAGATCTGGTTGAGAGCTTTTCCATTTTCGA
CATTGATGGTGATGGGGAGATTTCCATCTCAGAATTGATGTCAGTGATGG
CTTCCGTTGGAAATGACATCTCAGCCGAAGATGCTGAAGATATCTTTGAT
GTCGTCGATTCTAACGGTACGGTTATGATCAAGTTTATTTTTTAGAATAA
CACCTTGTCACAACATTATTGAGAACCGGTTTATTTGTGTACAGCTCAAG
GTGCAATAGAACTCTTAATTCCAGCCGCGAAAGGTGCGGGCAATTTTCCA
TCTTTTAGTATCTAGCTCTTTAACATTTTCCTCAACTATTTAAGATTCCT
ATCAAACTAATCGGTCAGATTATTTTCAAGTAGATATTAAAAAAAGACTC
AATTCATGCCATATCTATTCCCAAATCTATTTATTTCTGGGATTTAACGA
CGGTTTCCTTCTTTTTCAGGTGACGGTAAAATAAGTTTTGATGAATTCAA
AGAATGTATGTATGAGAAGATGTCTCAACAAACGGTGGACGAAGACCTCA
TCGGAGCCTTCGAAATCTTTGATGAAGACAAAGATGGTTACATTTCGCCA
ACAGAAATACAACTGTTATTCAAGAAACTCGGTGAATTGATCTCCACTGA
TGAAGCTGTTGAAATTATGAAAGATTGCGATCTCAACAAGGATGGTCTAA
TCGATTTCGAAGGTATATCTTATCTAATACCTAAATCTTGGTTGAAATCT
CCTAGTAATGAGAGGTATGCTGGGTCTTTTAGGTCTCTTGACGATCATCA
AGAAAAATTAATTTACCCCATCCAATATATTATTATCGGGAAATTGTATA
GTCCAATATCCTTGGAGTTTTACTGCTAACGACTTGGCATTTCTACGTTG
ATCAAAATATTCAAATGAAATAAACTTTATTGGTGTGAATATTTCTCTTG
CCTCCGTATTTGAAATTACTTAAAGACTGATGAAGATACGCGGTTATCCG
CACACTGCCAAACCCTCTCGCCATTTTAGATCGCGAAAATTTGGAAATGA
AATTTAATTTTAATTTTTTGTTTAATCTTTTCTTTACAGAATTCAAGGCA
TTCTACTTGAAGATTTTCGAGAACCAACCAACTCTCGCTGAACAACTGGT
TGCTGAAGCGGAAGCAGATGAAAAGCAAAAAGTCGCTCTTGCAATGGAAG
AAAAAGAAGCGAGTGGATATCCTCAAGGTGAAGCACCCTCACCCACAGAT
TACAAATGATGATGTGGTGATAGAGAGTTTACTCCTTTGTTGGTTCCGCG
TGGTGCTGTTGTGCGCATGCGCGAGGTTGGTCGGATTTGAAGAAGTTCGG
CGTGACATCATTTCATTGCGGATTTGATCAAACGGCCCTCATCTGCGGTA
TACTAACGGAAAGTTACAGGCCCGTTGAGTGATAAAGTGTCGGAAGAACG
AACGATCTTCTCCCATAACCGGCCCTCGTGATCGAATTCGAAACCAGATT
TAATTTGTTGGGAAAATGTGATACGAACACAACAGAAAATTTGCTAAGAT
TTGATTTACCGAAATTTCATGATTTAATGACTTGTTATATAGGTTATTTT
TTCATAGGACTTCTTAAGTAGATAGCAGTGCTAGGACAATTTGTTATTTT
GATAACTAATCTTGCATCATAGCTGAAAGCCCCCTGATTTATTAATGGGA
GCGATGAAATTTATTTTGATTTTGAATTTCACCATTCCCAGGCCGAAATA
GTAACCTTCAGTATTAACTGCAATCTTTATCTGATTTAGATCGGTTACTA
ATCATAAGCTTGAAATGCTTATAGCGCTCGCTGTTTCGGCTTATTTGTTA
TCGATGGATAAGCTTTCTCATATATAGTTATTCATCTTGAACTTAAAATT
GTGTATATTTTTGTATGAATATTATTTGCATATTTTGAAAATATGATCCT
TTTTTCTAAAAAAAGAAAATTTTG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_039445XLOC_039445Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00062983-exon-scaffold_375-1575043694:308767..309134TCONS_00062983-exon-scaffold_375-1575043694:308767..309134Clytia hemisphaericaexon
TCONS_00062983-exon-scaffold_375-1575043694:306005..306053TCONS_00062983-exon-scaffold_375-1575043694:306005..306053Clytia hemisphaericaexon
TCONS_00062983-exon-scaffold_375-1575043694:305419..305562TCONS_00062983-exon-scaffold_375-1575043694:305419..305562Clytia hemisphaericaexon
TCONS_00062983-exon-scaffold_375-1575043694:304873..305115TCONS_00062983-exon-scaffold_375-1575043694:304873..305115Clytia hemisphaericaexon
TCONS_00062983-exon-scaffold_375-1575043694:303611..304495TCONS_00062983-exon-scaffold_375-1575043694:303611..304495Clytia hemisphaericaexon
TCONS_00062983-exon-scaffold_375-1510915933:308767..309134TCONS_00062983-exon-scaffold_375-1510915933:308767..309134Clytia hemisphaericaexon
TCONS_00062983-exon-scaffold_375-1510915933:306005..306053TCONS_00062983-exon-scaffold_375-1510915933:306005..306053Clytia hemisphaericaexon
TCONS_00062983-exon-scaffold_375-1510915933:305419..305562TCONS_00062983-exon-scaffold_375-1510915933:305419..305562Clytia hemisphaericaexon
TCONS_00062983-exon-scaffold_375-1510915933:304873..305115TCONS_00062983-exon-scaffold_375-1510915933:304873..305115Clytia hemisphaericaexon
TCONS_00062983-exon-scaffold_375-1510915933:303611..304495TCONS_00062983-exon-scaffold_375-1510915933:303611..304495Clytia hemisphaericaexon
TCONS_00062983-exon-scaffold_375-1491911889:308767..309134TCONS_00062983-exon-scaffold_375-1491911889:308767..309134Clytia hemisphaericaexon
TCONS_00062983-exon-scaffold_375-1491911889:306005..306053TCONS_00062983-exon-scaffold_375-1491911889:306005..306053Clytia hemisphaericaexon
TCONS_00062983-exon-scaffold_375-1491911889:305419..305562TCONS_00062983-exon-scaffold_375-1491911889:305419..305562Clytia hemisphaericaexon
TCONS_00062983-exon-scaffold_375-1491911889:304873..305115TCONS_00062983-exon-scaffold_375-1491911889:304873..305115Clytia hemisphaericaexon
TCONS_00062983-exon-scaffold_375-1491911889:303611..304495TCONS_00062983-exon-scaffold_375-1491911889:303611..304495Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_375supercontigscaffold_375:303611..309134 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.144676	0.0802885	0.156395	0.190154	0	0.119031	0	0.225365	1.5875	0.761128	1.58558	1.48324	3.6854	3.44934	0.390718	0.262598	0.165456	0.363247	13.5978	14.1305	0.0745606	0.476589	0.0962882	0	0.102645	0.105517	0	0	2.55969	0.84879
Blast
[Close]
BLAST of TCONS_00062983 vs. Swiss-Prot (Human)
Match: CALM3 (Calmodulin-3 OS=Homo sapiens GN=CALM3 PE=1 SV=1)

HSP 1 Score: 102.064 bits (253), Expect = 7.099e-25
Identity = 50/128 (39.06%), Postives = 85/128 (66.41%), Query Frame = 3 
Query:  426 ESFSIFDIDGDGEISISELMSVMASVGNDISAEDAEDIFDVVDSNGDGKISFDEFKECMYEKMSQQTVDEDLIGAFEIFDEDKDGYISPTEIQLLFKKLGELISTDEAVEIMKDCDLNKDGLIDFEEF 809
            E+FS+FD DGDG I+  EL +VM S+G + +  + +D+ + VD++G+G I F EF   M  KM     +E++  AF +FD+D +GYIS  E++ +   LGE ++ +E  E++++ D++ DG +++EEF
Sbjct:   15 EAFSLFDKDGDGTITTKELGTVMRSLGQNPTEAELQDMINEVDADGNGTIDFPEFLTMMARKMKDTDSEEEIREAFRVFDKDGNGYISAAELRHVMTNLGEKLTDEEVDEMIREADIDGDGQVNYEEF 142
The following BLAST results are available for this feature:
BLAST of TCONS_00062983 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
CALM37.099e-2539.06Calmodulin-3 OS=Homo sapiens GN=CALM3 PE=1 SV=1[more]
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