TCONS_00062995 (transcript) - C. hemisphaerica

Overview
NameTCONS_00062995
Unique NameTCONS_00062995
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length407

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00062995 ID=TCONS_00062995|Name=TCONS_00062995|organism=Clytia hemisphaerica|type=transcript|length=407bp
AGGACTAATGACAACGTTCTTTGGTTATTCTGGAAGAACAACGCTCAGCT
TCTTTGATAATATATTATATCATTCCTCCCGGTTAATGGATTCTATCAGA
CCATGCAAAAGGAGCTTGAAACCATCAGAGGAGGAATCTACACCTAACAG
TCCAAGAACTACGCAACCGCTATTTCCACCTTAGCTTGATCTCAAAGATG
CTCGTTTTTGTTATGAAACTGCACTTTGACTAGCCTggatgcacgttttt
ttataagaacattcaaagttttaagcataaaaatgttctGAACATGTTTT
TGCTTTCttattttttaagtatttttgtccattcttCTAAGAAATCGGGC
ATTTTATAGTCCACAAGCCTTACTGTTCGTAactttttcttagtattttg
caaCGGA
Run BLAST on NCBI

transcript from alignment at scaffold_375:126460..126866

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00062995 ID=TCONS_00062995|Name=TCONS_00062995|organism=Clytia hemisphaerica|type=transcript|length=407bp|location=Sequence derived from alignment at scaffold_375:126460..126866 (Clytia hemisphaerica)
TCCGttgcaaaatactaagaaaaagtTACGAACAGTAAGGCTTGTGGACT
ATAAAATGCCCGATTTCTTAGaagaatggacaaaaatacttaaaaaataa
GAAAGCAAAAACATGTTCagaacatttttatgcttaaaactttgaatgtt
cttataaaaaaacgtgcatccAGGCTAGTCAAAGTGCAGTTTCATAACAA
AAACGAGCATCTTTGAGATCAAGCTAAGGTGGAAATAGCGGTTGCGTAGT
TCTTGGACTGTTAGGTGTAGATTCCTCCTCTGATGGTTTCAAGCTCCTTT
TGCATGGTCTGATAGAATCCATTAACCGGGAGGAATGATATAATATATTA
TCAAAGAAGCTGAGCGTTGTTCTTCCAGAATAACCAAAGAACGTTGTCAT
TAGTCCT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_039455XLOC_039455Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00062995-exon-scaffold_375-1491911889:126460..126866TCONS_00062995-exon-scaffold_375-1491911889:126460..126866Clytia hemisphaericaexon
TCONS_00062995-exon-scaffold_375-1510915933:126460..126866TCONS_00062995-exon-scaffold_375-1510915933:126460..126866Clytia hemisphaericaexon
TCONS_00062995-exon-scaffold_375-1575043694:126460..126866TCONS_00062995-exon-scaffold_375-1575043694:126460..126866Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_375supercontigscaffold_375:126460..126866 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.358361	0.174729	0.608632	0.198484	0	0.381886	1.38219	2.15665	1.05694	1.68325	6.35369	1.074	16.8026	5.94031	3.8663	17.9068	3.09373	6.47982	15.8092	10.5638	0	0	0.616335	0.373558	0.192378	0.171693	2.21123	3.40872	5.17079	2.02624
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00062995 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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