TCONS_00062997 (transcript) - C. hemisphaerica

Overview
NameTCONS_00062997
Unique NameTCONS_00062997
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length214

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00062997 ID=TCONS_00062997|Name=TCONS_00062997|organism=Clytia hemisphaerica|type=transcript|length=214bp
TCACCTGCCCTTGAAATAAATTCAGCTTTGTAATCTTCATTACTATGAAG
CTGCATTAAACCATCAGTGTGACCGTATGTTCGAACACGGAGTTCCGTTT
CAACGTGCCACAACGCAAATGGATGTGAAGGGAATCTGTATCTACCAAGT
GTGAACCGATCACGACATCGTGATGATAGGATGATACGATTATTCTGTGT
AGGATCATTNTCCT
Run BLAST on NCBI

transcript from alignment at scaffold_375:129158..129371

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00062997 ID=TCONS_00062997|Name=TCONS_00062997|organism=Clytia hemisphaerica|type=transcript|length=214bp|location=Sequence derived from alignment at scaffold_375:129158..129371 (Clytia hemisphaerica)
AGGANAATGATCCTACACAGAATAATCGTATCATCCTATCATCACGATGT
CGTGATCGGTTCACACTTGGTAGATACAGATTCCCTTCACATCCATTTGC
GTTGTGGCACGTTGAAACGGAACTCCGTGTTCGAACATACGGTCACACTG
ATGGTTTAATGCAGCTTCATAGTAATGAAGATTACAAAGCTGAATTTATT
TCAAGGGCAGGTGA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_039457XLOC_039457Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00062997-exon-scaffold_375-1491911889:129158..129371TCONS_00062997-exon-scaffold_375-1491911889:129158..129371Clytia hemisphaericaexon
TCONS_00062997-exon-scaffold_375-1510915933:129158..129371TCONS_00062997-exon-scaffold_375-1510915933:129158..129371Clytia hemisphaericaexon
TCONS_00062997-exon-scaffold_375-1575043694:129158..129371TCONS_00062997-exon-scaffold_375-1575043694:129158..129371Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_375supercontigscaffold_375:129158..129371 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
1.3568	1.32309	0	0	0	0	0	0	0	0	5.49848	0	1.80473	1.87423	0.770436	4.13398	0	1.04397	11.5385	40.7503	2.62366	1.9196	1.55568	1.41434	0	0	0	0	0	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00062997 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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