TCONS_00063009 (transcript) - C. hemisphaerica

Overview
NameTCONS_00063009
Unique NameTCONS_00063009
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length798

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00063009 ID=TCONS_00063009|Name=TCONS_00063009|organism=Clytia hemisphaerica|type=transcript|length=798bp
CAGCTGATGAAAAAATTAGATCAATGCAAGAAGTTGAATTATCAAGGAGA
TGAGTAGGCCCATCAATTAATTGTTTCAGACCATGCTGGGTAGCtaagtt
ttgaatttctctACCTCTAGGATCAGTGACGTCACCGCTCCACCAATCAG
AATTCTTGACATTGAAATCCCCAAGAAAAAGTGTAGCAGTAggagaaaaa
ttttggatatttattATAGTCTCCTCCCATTTACGAGAGAAAACATCGAA
TTCGTCAGAAGTCTGACTGGGGGAACGGTAACAGACACAAAGAAAAAACC
GGTTTGCACCGGTTTTCATCTCAGCTACAAGACATTCGTCCAAAGTAGTG
AGTTGTGGTTTTACGTCAAGACCTAGGTGGTCTCGATGATAAATACAAAC
ACCGCCTCTCTTATTGTTAGAGGGATGGTGGCATCTTTTGATCTCATAAT
TTTCAATAACCAGCCTAGGATCGTCATCTTTTATCTCAGAGTTAAGAAAA
GTTTCACTCAAGCAGACTATGTCGAACTTATGAATGTTTAGAAATGCAGA
AAGTTGTTTAATCTTAATAAAATCTCCCATAGAATCTTCAACCCAAACGC
TATTCAGATTCCAATGACAAACACTAAGCGTGGTTTCCCTCTCCGGCCCA
GGATTAACCTCAATATCTCCGGACAAAAGAAGGCATAGAAGCATAagtgt
aaaaagaaaattttgtaggATGGAAAAACTAAAGGAGTGGTTAGGTTCAC
GATATTTCaaacataaaatattgaaaaatccgATGCATGCTCTGTATT
Run BLAST on NCBI

protein sequence of TCONS_00063009-protein

>TCONS_00063009-protein ID=TCONS_00063009-protein|Name=TCONS_00063009-protein|organism=Clytia hemisphaerica|type=polypeptide|length=265bp
YRACIGFFNILCLKYREPNHSFSFSILQNFLFTLMLLCLLLSGDIEVNPG
PERETTLSVCHWNLNSVWVEDSMGDFIKIKQLSAFLNIHKFDIVCLSETF
LNSEIKDDDPRLVIENYEIKRCHHPSNNKRGGVCIYHRDHLGLDVKPQLT
TLDECLVAEMKTGANRFFLCVCYRSPSQTSDEFDVFSRKWEETIINIQNF
SPTATLFLGDFNVKNSDWWSGDVTDPRGREIQNLATQHGLKQLIDGPTHL
LDNSTSCIDLIFSSA
Run BLAST on NCBI

transcript from alignment at scaffold_375:333907..334704

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00063009 ID=TCONS_00063009|Name=TCONS_00063009|organism=Clytia hemisphaerica|type=transcript|length=798bp|location=Sequence derived from alignment at scaffold_375:333907..334704 (Clytia hemisphaerica)
AATACAGAGCATGCATcggatttttcaatattttatgtttGAAATATCGT
GAACCTAACCACTCCTTTAGTTTTTCCATcctacaaaattttctttttac
actTATGCTTCTATGCCTTCTTTTGTCCGGAGATATTGAGGTTAATCCTG
GGCCGGAGAGGGAAACCACGCTTAGTGTTTGTCATTGGAATCTGAATAGC
GTTTGGGTTGAAGATTCTATGGGAGATTTTATTAAGATTAAACAACTTTC
TGCATTTCTAAACATTCATAAGTTCGACATAGTCTGCTTGAGTGAAACTT
TTCTTAACTCTGAGATAAAAGATGACGATCCTAGGCTGGTTATTGAAAAT
TATGAGATCAAAAGATGCCACCATCCCTCTAACAATAAGAGAGGCGGTGT
TTGTATTTATCATCGAGACCACCTAGGTCTTGACGTAAAACCACAACTCA
CTACTTTGGACGAATGTCTTGTAGCTGAGATGAAAACCGGTGCAAACCGG
TTTTTTCTTTGTGTCTGTTACCGTTCCCCCAGTCAGACTTCTGACGAATT
CGATGTTTTCTCTCGTAAATGGGAGGAGACTATaataaatatccaaaatt
tttctccTACTGCTACACTTTTTCTTGGGGATTTCAATGTCAAGAATTCT
GATTGGTGGAGCGGTGACGTCACTGATCCTAGAGGTagagaaattcaaaa
cttaGCTACCCAGCATGGTCTGAAACAATTAATTGATGGGCCTACTCATC
TCCTTGATAATTCAACTTCTTGCATTGATCTAATTTTTTCATCAGCTG

Coding sequence (CDS) from alignment at scaffold_375:333907..334704

>TCONS_00063009 ID=TCONS_00063009|Name=TCONS_00063009|organism=Clytia hemisphaerica|type=CDS|length=795bp|location=Sequence derived from alignment at scaffold_375:333907..334704 (Clytia hemisphaerica)
TACAGAGCATGCATcggatttttcaatattttatgtttGAAATATCGTGA
ACCTAACCACTCCTTTAGTTTTTCCATcctacaaaattttctttttacac
tTATGCTTCTATGCCTTCTTTTGTCCGGAGATATTGAGGTTAATCCTGGG
CCGGAGAGGGAAACCACGCTTAGTGTTTGTCATTGGAATCTGAATAGCGT
TTGGGTTGAAGATTCTATGGGAGATTTTATTAAGATTAAACAACTTTCTG
CATTTCTAAACATTCATAAGTTCGACATAGTCTGCTTGAGTGAAACTTTT
CTTAACTCTGAGATAAAAGATGACGATCCTAGGCTGGTTATTGAAAATTA
TGAGATCAAAAGATGCCACCATCCCTCTAACAATAAGAGAGGCGGTGTTT
GTATTTATCATCGAGACCACCTAGGTCTTGACGTAAAACCACAACTCACT
ACTTTGGACGAATGTCTTGTAGCTGAGATGAAAACCGGTGCAAACCGGTT
TTTTCTTTGTGTCTGTTACCGTTCCCCCAGTCAGACTTCTGACGAATTCG
ATGTTTTCTCTCGTAAATGGGAGGAGACTATaataaatatccaaaatttt
tctccTACTGCTACACTTTTTCTTGGGGATTTCAATGTCAAGAATTCTGA
TTGGTGGAGCGGTGACGTCACTGATCCTAGAGGTagagaaattcaaaact
taGCTACCCAGCATGGTCTGAAACAATTAATTGATGGGCCTACTCATCTC
CTTGATAATTCAACTTCTTGCATTGATCTAATTTTTTCATCAGCT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_039469XLOC_039469Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00063009-proteinTCONS_00063009-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00063009-exon-scaffold_375-1491911889:333907..334704TCONS_00063009-exon-scaffold_375-1491911889:333907..334704Clytia hemisphaericaexon
TCONS_00063009-exon-scaffold_375-1510915933:333907..334704TCONS_00063009-exon-scaffold_375-1510915933:333907..334704Clytia hemisphaericaexon
TCONS_00063009-exon-scaffold_375-1575043694:333907..334704TCONS_00063009-exon-scaffold_375-1575043694:333907..334704Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_375supercontigscaffold_375:333907..334704 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.301169	0.368369	0.613799	1.09104	0.568601	0.385128	0.929282	0.227395	0.535844	0.128468	0.061025	0.320923	0.200298	0.0416023	0.0342028	0.300534	0.550993	0.343736	0.32015	0.268011	0.300701	0.596531	0	0.313941	0.790017	0.461734	1.42535	0.522019	0.932921	0.885489
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR005135Endo/exonuclease/phosphatase
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00063009 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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