TCONS_00063014 (transcript) - C. hemisphaerica

Overview
NameTCONS_00063014
Unique NameTCONS_00063014
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length645

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00063014 ID=TCONS_00063014|Name=TCONS_00063014|organism=Clytia hemisphaerica|type=transcript|length=645bp
GATAAGTTGGAAATGATCAACCCTCACTCGTTATTTTACCACACCTGCGA
TTGTCTCTCCTTCGACGAATCTGTTCCTTTGGATTGGCTGATGAACGAAA
GCTCATCCACGATTTTTACTCGTTACATGACGCAATATGTTGAGTTTGCT
ACAACACATTTTGATGTATTTGTAAAAACATTAGACGGTCTGTTGGTATC
TGATTGTCCAAGTGTTTCCAGTAATGCCGAAAAACTTGATATTGACCGCT
TGAAACTTGACCCTTTGAACATTGAACCTAAGAACATACTACAGTCAATG
TGTGTAGACCATCAATCCGAAGAACAGGTTATAGCTTCTAAGCCCTCAGA
CCCTTGTTCTAAAGAAATGCTCAAATCAAAGAGTCTGTTGGTCGATTACA
GCTCATCCTCTTCATCGGATATGGAAGACTCGTCTAAACAATACACGAAA
CCAGTAGAAAGCCTTATGTCTTGTTTGATTCGCTTACACTTCAAATTAGA
GAGACTGGGGACGAATACTCATTCAACAGATCCAATGAACGTATTATGCA
AACGTCTTGAACGTCTAGAGGAAATCTACGAGAATTAATTGGTTGTGGGC
CAGAGGATGTTGTTAATTACATCATGCTAATTAACTAAAGAATAG
Run BLAST on NCBI

protein sequence of TCONS_00063014-protein

>TCONS_00063014-protein ID=TCONS_00063014-protein|Name=TCONS_00063014-protein|organism=Clytia hemisphaerica|type=polypeptide|length=195bp
DKLEMINPHSLFYHTCDCLSFDESVPLDWLMNESSSTIFTRYMTQYVEFA
TTHFDVFVKTLDGLLVSDCPSVSSNAEKLDIDRLKLDPLNIEPKNILQSM
CVDHQSEEQVIASKPSDPCSKEMLKSKSLLVDYSSSSSSDMEDSSKQYTK
PVESLMSCLIRLHFKLERLGTNTHSTDPMNVLCKRLERLEEIYEN
Run BLAST on NCBI

transcript from alignment at scaffold_375:401531..402175

Legend: exonthree_prime_UTRCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00063014 ID=TCONS_00063014|Name=TCONS_00063014|organism=Clytia hemisphaerica|type=transcript|length=645bp|location=Sequence derived from alignment at scaffold_375:401531..402175 (Clytia hemisphaerica)
CTATTCTTTAGTTAATTAGCATGATGTAATTAACAACATCCTCTGGCCCA
CAACCAATTAATTCTCGTAGATTTCCTCTAGACGTTCAAGACGTTTGCAT
AATACGTTCATTGGATCTGTTGAATGAGTATTCGTCCCCAGTCTCTCTAA
TTTGAAGTGTAAGCGAATCAAACAAGACATAAGGCTTTCTACTGGTTTCG
TGTATTGTTTAGACGAGTCTTCCATATCCGATGAAGAGGATGAGCTGTAA
TCGACCAACAGACTCTTTGATTTGAGCATTTCTTTAGAACAAGGGTCTGA
GGGCTTAGAAGCTATAACCTGTTCTTCGGATTGATGGTCTACACACATTG
ACTGTAGTATGTTCTTAGGTTCAATGTTCAAAGGGTCAAGTTTCAAGCGG
TCAATATCAAGTTTTTCGGCATTACTGGAAACACTTGGACAATCAGATAC
CAACAGACCGTCTAATGTTTTTACAAATACATCAAAATGTGTTGTAGCAA
ACTCAACATATTGCGTCATGTAACGAGTAAAAATCGTGGATGAGCTTTCG
TTCATCAGCCAATCCAAAGGAACAGATTCGTCGAAGGAGAGACAATCGCA
GGTGTGGTAAAATAACGAGTGAGGGTTGATCATTTCCAACTTATC

Coding sequence (CDS) from alignment at scaffold_375:401531..402175

>TCONS_00063014 ID=TCONS_00063014|Name=TCONS_00063014|organism=Clytia hemisphaerica|type=CDS|length=588bp|location=Sequence derived from alignment at scaffold_375:401531..402175 (Clytia hemisphaerica)
TTAATTCTCGTAGATTTCCTCTAGACGTTCAAGACGTTTGCATAATACGT
TCATTGGATCTGTTGAATGAGTATTCGTCCCCAGTCTCTCTAATTTGAAG
TGTAAGCGAATCAAACAAGACATAAGGCTTTCTACTGGTTTCGTGTATTG
TTTAGACGAGTCTTCCATATCCGATGAAGAGGATGAGCTGTAATCGACCA
ACAGACTCTTTGATTTGAGCATTTCTTTAGAACAAGGGTCTGAGGGCTTA
GAAGCTATAACCTGTTCTTCGGATTGATGGTCTACACACATTGACTGTAG
TATGTTCTTAGGTTCAATGTTCAAAGGGTCAAGTTTCAAGCGGTCAATAT
CAAGTTTTTCGGCATTACTGGAAACACTTGGACAATCAGATACCAACAGA
CCGTCTAATGTTTTTACAAATACATCAAAATGTGTTGTAGCAAACTCAAC
ATATTGCGTCATGTAACGAGTAAAAATCGTGGATGAGCTTTCGTTCATCA
GCCAATCCAAAGGAACAGATTCGTCGAAGGAGAGACAATCGCAGGTGTGG
TAAAATAACGAGTGAGGGTTGATCATTTCCAACTTATC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_039474XLOC_039474Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00063014-exon-scaffold_375-1491911889:401531..402175TCONS_00063014-exon-scaffold_375-1491911889:401531..402175Clytia hemisphaericaexon
TCONS_00063014-exon-scaffold_375-1510915933:401531..402175TCONS_00063014-exon-scaffold_375-1510915933:401531..402175Clytia hemisphaericaexon
TCONS_00063014-exon-scaffold_375-1575043694:401531..402175TCONS_00063014-exon-scaffold_375-1575043694:401531..402175Clytia hemisphaericaexon
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00063014-proteinTCONS_00063014-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_375supercontigscaffold_375:401531..402175 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
1.38331	0.793495	0.36853	0.270411	1.646	1.90768	1.56923	1.76291	1.64567	1.61376	0.741957	1.13804	1.08235	0.674416	1.98682	1.53714	2.26014	2.25396	0.0864991	0.452576	1.18011	1.26636	1.77267	1.9509	3.75667	3.82056	0.334727	0.238153	2.3482	1.84034
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00063014 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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