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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00063016 ID=TCONS_00063016|Name=TCONS_00063016|organism=Clytia hemisphaerica|type=transcript|length=871bp
GAAGCTTAGAACATTGGTCACCATCATTATCAGCTAAGGACAACACCGAT
CACCTTTGTGTTACACTAAGCAGTTGTATCAAATTTATGGACAAACAGAC
AATTTCTTTCCAACAGAAGCAATCTCTTTATGAAGAATGTTTAAAGCTAT
ATCCGCAAATTCATTCCTCATTTACTTTTTATCTGTTGGATAAACTTCTT
GTCCAAATCATTTTCAATGACTTAGAAAGTGAAAGACTTGATTTATCGAA
ATTATCTACGGAAGAATTGTTGGATGCAACCTTCCATCAATATTTGTTGG
AATCAATTATCAACAAAGTAAAGTCAACTGGTTACATTCTATCAGAGGCA
GACAATATTCAGGAATACCTTTGCCAGAGGATATCATCATTGTCAGACAG
TTTATATCAGTGTTCTCTTAATACAATGAGCGACATCACCAGGCAAGATA
ATCTGTTTGTCATAAAGCTTCATAAAACTCTCCTTAATCATAGTGCATCA
ACTAACAGTATTTTAACTGCACATTTAGAGATCTATTATACCAAAACTTT
GAGATGGATCATGTCAGCACTTCCACCTTCGAATGTAGAAGGTTGGAAAC
TCTTTTCTCAGATGTTAAAGAAAATCTCAACAATACAGACAAAGAGGACC
TTTGAAGGGGAATCCAAATTCTGTTGTAACTTCTTAGAGATGTTCTTTAC
CAGTGTATCACATCTTGTGTTGTGTAAATCAGATTTGTGTGGGAACCTTT
CAAAAGAAAGTCTTGAATGTAACCAGCAGTTGTATGAATACTTAATGGAA
GTACAAACTGGTCGTAGATTGGTTTTATCCTTAATGGAACTTATCTACTT
TGTTGCCAAGAAATATCAGAG Run BLAST on NCBI protein sequence of TCONS_00063016-protein >TCONS_00063016-protein ID=TCONS_00063016-protein|Name=TCONS_00063016-protein|organism=Clytia hemisphaerica|type=polypeptide|length=289bp
SLEHWSPSLSAKDNTDHLCVTLSSCIKFMDKQTISFQQKQSLYEECLKLY
PQIHSSFTFYLLDKLLVQIIFNDLESERLDLSKLSTEELLDATFHQYLLE
SIINKVKSTGYILSEADNIQEYLCQRISSLSDSLYQCSLNTMSDITRQDN
LFVIKLHKTLLNHSASTNSILTAHLEIYYTKTLRWIMSALPPSNVEGWKL
FSQMLKKISTIQTKRTFEGESKFCCNFLEMFFTSVSHLVLCKSDLCGNLS
KESLECNQQLYEYLMEVQTGRRLVLSLMELIYFVAKKYQ Run BLAST on NCBI transcript from alignment at scaffold_375:403090..403960 Legend: exonthree_prime_UTRCDSfive_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00063016 ID=TCONS_00063016|Name=TCONS_00063016|organism=Clytia hemisphaerica|type=transcript|length=871bp|location=Sequence derived from alignment at scaffold_375:403090..403960 (Clytia hemisphaerica)
CTCTGATATTTCTTGGCAACAAAGTAGATAAGTTCCATTAAGGATAAAAC
CAATCTACGACCAGTTTGTACTTCCATTAAGTATTCATACAACTGCTGGT
TACATTCAAGACTTTCTTTTGAAAGGTTCCCACACAAATCTGATTTACAC
AACACAAGATGTGATACACTGGTAAAGAACATCTCTAAGAAGTTACAACA
GAATTTGGATTCCCCTTCAAAGGTCCTCTTTGTCTGTATTGTTGAGATTT
TCTTTAACATCTGAGAAAAGAGTTTCCAACCTTCTACATTCGAAGGTGGA
AGTGCTGACATGATCCATCTCAAAGTTTTGGTATAATAGATCTCTAAATG
TGCAGTTAAAATACTGTTAGTTGATGCACTATGATTAAGGAGAGTTTTAT
GAAGCTTTATGACAAACAGATTATCTTGCCTGGTGATGTCGCTCATTGTA
TTAAGAGAACACTGATATAAACTGTCTGACAATGATGATATCCTCTGGCA
AAGGTATTCCTGAATATTGTCTGCCTCTGATAGAATGTAACCAGTTGACT
TTACTTTGTTGATAATTGATTCCAACAAATATTGATGGAAGGTTGCATCC
AACAATTCTTCCGTAGATAATTTCGATAAATCAAGTCTTTCACTTTCTAA
GTCATTGAAAATGATTTGGACAAGAAGTTTATCCAACAGATAAAAAGTAA
ATGAGGAATGAATTTGCGGATATAGCTTTAAACATTCTTCATAAAGAGAT
TGCTTCTGTTGGAAAGAAATTGTCTGTTTGTCCATAAATTTGATACAACT
GCTTAGTGTAACACAAAGGTGATCGGTGTTGTCCTTAGCTGATAATGATG
GTGACCAATGTTCTAAGCTTC Coding sequence (CDS) from alignment at scaffold_375:403090..403960 >TCONS_00063016 ID=TCONS_00063016|Name=TCONS_00063016|organism=Clytia hemisphaerica|type=CDS|length=867bp|location=Sequence derived from alignment at scaffold_375:403090..403960 (Clytia hemisphaerica)
CTGATATTTCTTGGCAACAAAGTAGATAAGTTCCATTAAGGATAAAACCA
ATCTACGACCAGTTTGTACTTCCATTAAGTATTCATACAACTGCTGGTTA
CATTCAAGACTTTCTTTTGAAAGGTTCCCACACAAATCTGATTTACACAA
CACAAGATGTGATACACTGGTAAAGAACATCTCTAAGAAGTTACAACAGA
ATTTGGATTCCCCTTCAAAGGTCCTCTTTGTCTGTATTGTTGAGATTTTC
TTTAACATCTGAGAAAAGAGTTTCCAACCTTCTACATTCGAAGGTGGAAG
TGCTGACATGATCCATCTCAAAGTTTTGGTATAATAGATCTCTAAATGTG
CAGTTAAAATACTGTTAGTTGATGCACTATGATTAAGGAGAGTTTTATGA
AGCTTTATGACAAACAGATTATCTTGCCTGGTGATGTCGCTCATTGTATT
AAGAGAACACTGATATAAACTGTCTGACAATGATGATATCCTCTGGCAAA
GGTATTCCTGAATATTGTCTGCCTCTGATAGAATGTAACCAGTTGACTTT
ACTTTGTTGATAATTGATTCCAACAAATATTGATGGAAGGTTGCATCCAA
CAATTCTTCCGTAGATAATTTCGATAAATCAAGTCTTTCACTTTCTAAGT
CATTGAAAATGATTTGGACAAGAAGTTTATCCAACAGATAAAAAGTAAAT
GAGGAATGAATTTGCGGATATAGCTTTAAACATTCTTCATAAAGAGATTG
CTTCTGTTGGAAAGAAATTGTCTGTTTGTCCATAAATTTGATACAACTGC
TTAGTGTAACACAAAGGTGATCGGTGTTGTCCTTAGCTGATAATGATGGT
GACCAATGTTCTAAGCT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00063016-exon-scaffold_375-1491911889:403090..403960 | TCONS_00063016-exon-scaffold_375-1491911889:403090..403960 | Clytia hemisphaerica | exon |
| TCONS_00063016-exon-scaffold_375-1510915933:403090..403960 | TCONS_00063016-exon-scaffold_375-1510915933:403090..403960 | Clytia hemisphaerica | exon |
| TCONS_00063016-exon-scaffold_375-1575043694:403090..403960 | TCONS_00063016-exon-scaffold_375-1575043694:403090..403960 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_375 | supercontig | scaffold_375:403090..403960 . |
Blast
The following BLAST results are available for this feature:
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