TCONS_00063024 (transcript) - C. hemisphaerica

Overview
NameTCONS_00063024
Unique NameTCONS_00063024
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length2954

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00063024 ID=TCONS_00063024|Name=TCONS_00063024|organism=Clytia hemisphaerica|type=transcript|length=2954bp
TCCTATCTTTCGTTTTGTTTGATGCTCactttttcctcatttttatgttt
ttattcaaattcttcttttttatcatttagatttcaaataaaatgaaaag
tacAGACGAAACTTACCCTGAAGAAATAAAACAGAATGAATACACTGTAT
GTGAAAagacttttaccaaaaaattgttACATGAAAAACATAACAAGATG
TACAATTGTAAGGACTGTGGTAAGTGTTTTTCATCGAAGCATGGTTTAAG
ATTACATCAAATGTACCATCAACCGTTCACAAGTCTTGAGTGTGAAAAAG
TGAATGTTAGTTCCAACAGTAATGAACGTGGTAAAAGTTTCACACAAGAA
GATCATTTGCACCGTTTCCATGAAGAAAGTTCAGACGAACCCAGGTTTCC
TTGCGAGAAATGTGGTATGACATTTACGAGaaaatttaacttaaaaaaac
atGTTGATGGGTTTCGATGTCCAAATGGAAGGGACAAGTTAAAATGTCCC
AAATGTGCTGATTTGTTTACACGGAAGGCTGATTTTAATGCACACACTAG
GTCTCAGCATCCAGATATATGTTTTAAATGTACGGAATGTGATAACATTT
TCACAAGTCGAGTTGATTTAAATAATCATACCAAACGACACGTTCGAAAA
AATTTTGAGTGTACTGAATGTGGTGAGACATTTACACAGATAATTGCCTT
GAATTCTCATCTTCGATTACATTATTTACAAAAACATCTTAAAGAATCAA
CGGTACCTAATGAAGATCTAGAGAACAACCAAACACCGGCTTTATTGGCT
CGTACTTCGAGtgaccaaaatgaaattgatcAACATTTCCAACAAACTCG
CCTTACAATTCAGCTGCCAAACCAGATCCAATCTCTACCACTGCGCCTAC
GACAAAACAGACAATCAGAAACCGCATCTCAAATACCGTTACAGACATAT
GAATCTACTTCATCAAATGTACCAGTGGGAAGTATTAATTTGGTTCCTAA
AAACTcagaaatgtttgaaaatttttcagtaaaaatAGAACCATCTTTAA
CAACGGCACCTCAAATACCGTTACAGACATGTGAATCTACTTCATCAAAT
GAACCAGTGGGAAGTATTAATTTGGTTCCCGAAAACTcagaaatgtttga
aaatttttcagtaaaaatAGAACCATCTTTAACAACGGCACCTCAAATAC
CGTTACAGACATGTGAATCTACTTCATCAAATGAACCAGTGGGAAGTATT
AATTTGGTTCCCGAAAACTcagaaatgtttgaaaatttttcagtaaaaat
AGAACCATCTTTAACAACGGCACCTCAAATACCGTTACAGACATGTGAAT
CTACTTCATCAAATGAACCAGCGGGAAGTATTAATTTGGTTCCCGAAAAc
tcagaaatttttgaaaacttttcagTAAAAATAGAACCATCTTTAACAAC
GGCACCTCAAATATCGTTACAGACATGTGAATCCACTTCATCAAATTTAC
CAGCGGAAAGTGTTCATTTGGTTCCCGAAAActcagaaatttttgaaaac
ttttcagTAAAAATAGAACCATCTCTAGCAACAGCACCTCAAATACCGTT
ACAGACATGTGAATCTACTTCATCAAATGTACCAGTGGGAAGTGTTCAAC
TAGGTCCCAAAAACCCAgaaattcttggaaatttttCAGTAAAGATCGAA
CCATCATCTCCAGAAGCATCCATTGTACCCCAAGAACCTATACAGCTAAT
AACAGAATGCCAAGAGCAACCTTTAAATCACCAGTCGCAACCTTCAGTCG
AAACAACATCTTCATCCAAAATGTCATCCAAAGAAAAGCTGAAAtctacc
aaacatcaaccacgATTGTCTGTAGCGCTACGATATACACTGCTCAAGCA
ACATGACAACAGAGAACTGAAATCTCAGAAAGCTCACAAAATAAAACAGT
CATTTGTACGCAATCATCAAAATCAACTACAAAACTTTATAACGAAACAA
CGAAACCTTTTAAAACATGGACAGAATAGTTTAATACAAAACCAAGGACA
AATACCCAACATGCGTGACGTTGAACTAGATATCACAGATAAGAATGACA
CAATTACATATAGGTCAAAAAATTCGAAAGCTTCCTAGAATTGTTTTAGT
TTATTTCTTGTCTTTAGCATTTAGTTTCCTCGCTTTATTTTATTACAACT
CCTCCCCTCCTtattaagttttaaaattttccaacctcCCCCTCCCCCCG
TAGTGTGAACGAAGGCTAGATGAAATTCGTGATTTATTTATCGATACTTT
AGGTCGCTTATAACCGAATGACACCGTTTTTTTGCATTTGAATATTTCGA
TGCAAATGTCCTTTTTCTAATAAGGTCAAACGAAATGAACAAAATAAACT
CTGCGGAATTGGATAGATCTTATCTCACTAGTAACTTTTTGTTATCGAGT
TCTAGTGATCAAAATGGAGAAACAAGCTTAACTTGTTTGATAGCACATCA
TAACTTGTTTTGTCTTTGGAGAGAGGGAAGTCAGACGGACGTACCTTTTT
ATAATGGGTTATAAGTAGACATTACATGTATTTTTACAAGTAGAATTACG
CAGTTTCTGTCTGATGGGCTGATTATTTATAATCTTTTATTTTAAgcata
taatattttttaaagttttaattttgatatACTTTGTTTTATCATTAATA
TTTGAATTTTGCGTTTATTTATTAGAGTTGTAAATTTTCTAGTTTTGTAT
TCACGTTTTTATCACaggttttgaaagtttcattatTCCACTCCATTTTT
ACTTAAGCCTCTTTACATTAAACCTACGGAGGCCTGGAGACCAGAGTTAA
AGTTCCCATGTTTGAAAAGCCTAAGCTGACTTTTTAAGGTCTTAAGacta
aaaatgttttcaatgtcGCCAtattgtgagtatttttttatGCATTTACT
Aaag
Run BLAST on NCBI

transcript from alignment at scaffold_376:103065..106018-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00063024 ID=TCONS_00063024|Name=TCONS_00063024|organism=Clytia hemisphaerica|type=transcript|length=2954bp|location=Sequence derived from alignment at scaffold_376:103065..106018- (Clytia hemisphaerica)
TCCTATCTTTCGTTTTGTTTGATGCTCACTTTTTCCTCATTTTTATGTTT
TTATTCAAATTCTTCTTTTTTATCATTTAGATTTCAAATAAAATGAAAAG
TACAGACGAAACTTACCCTGAAGAAATAAAACAGAATGAATACACTGTAT
GTGAAAAGACTTTTACCAAAAAATTGTTACATGAAAAACATAACAAGATG
TACAATTGTAAGGACTGTGGTAAGTGTTTTTCATCGAAGCATGGTTTAAG
ATTACATCAAATGTACCATCAACCGTTCACAAGTCTTGAGTGTGAAAAAG
TGAATGTTAGTTCCAACAGTAATGAACGTGGTAAAAGTTTCACACAAGAA
GATCATTTGCACCGTTTCCATGAAGAAAGTTCAGACGAACCCAGGTTTCC
TTGCGAGAAATGTGGTATGACATTTACGAGAAAATTTAACTTAAAAAAAC
ATGTTGATGGGTTTCGATGTCCAAATGGAAGGGACAAGTTAAAATGTCCC
AAATGTGCTGATTTGTTTACACGGAAGGCTGATTTTAATGCACACACTAG
GTCTCAGCATCCAGATATATGTTTTAAATGTACGGAATGTGATAACATTT
TCACAAGTCGAGTTGATTTAAATAATCATACCAAACGACACGTTCGAAAA
AATTTTGAGTGTACTGAATGTGGTGAGACATTTACACAGATAATTGCCTT
GAATTCTCATCTTCGATTACATTATTTACAAAAACATCTTAAAGAATCAA
CGGTACCTAATGAAGATCTAGAGAACAACCAAACACCGGCTTTATTGGCT
CGTACTTCGAGTGACCAAAATGAAATTGATCAACATTTCCAACAAACTCG
CCTTACAATTCAGCTGCCAAACCAGATCCAATCTCTACCACTGCGCCTAC
GACAAAACAGACAATCAGAAACCGCATCTCAAATACCGTTACAGACATAT
GAATCTACTTCATCAAATGTACCAGTGGGAAGTATTAATTTGGTTCCTAA
AAACTCAGAAATGTTTGAAAATTTTTCAGTAAAAATAGAACCATCTTTAA
CAACGGCACCTCAAATACCGTTACAGACATGTGAATCTACTTCATCAAAT
GAACCAGTGGGAAGTATTAATTTGGTTCCCGAAAACTCAGAAATGTTTGA
AAATTTTTCAGTAAAAATAGAACCATCTTTAACAACGGCACCTCAAATAC
CGTTACAGACATGTGAATCTACTTCATCAAATGAACCAGTGGGAAGTATT
AATTTGGTTCCCGAAAACTCAGAAATGTTTGAAAATTTTTCAGTAAAAAT
AGAACCATCTTTAACAACGGCACCTCAAATACCGTTACAGACATGTGAAT
CTACTTCATCAAATGAACCAGCGGGAAGTATTAATTTGGTTCCCGAAAAC
TCAGAAATTTTTGAAAACTTTTCAGTAAAAATAGAACCATCTTTAACAAC
GGCACCTCAAATATCGTTACAGACATGTGAATCCACTTCATCAAATTTAC
CAGCGGAAAGTGTTCATTTGGTTCCCGAAAACTCAGAAATTTTTGAAAAC
TTTTCAGTAAAAATAGAACCATCTCTAGCAACAGCACCTCAAATACCGTT
ACAGACATGTGAATCTACTTCATCAAATGTACCAGTGGGAAGTGTTCAAC
TAGGTCCCAAAAACCCAGAAATTCTTGGAAATTTTTCAGTAAAGATCGAA
CCATCATCTCCAGAAGCATCCATTGTACCCCAAGAACCTATACAGCTAAT
AACAGAATGCCAAGAGCAACCTTTAAATCACCAGTCGCAACCTTCAGTCG
AAACAACATCTTCATCCAAAATGTCATCCAAAGAAAAGCTGAAATCTACC
AAACATCAACCACGATTGTCTGTAGCGCTACGATATACACTGCTCAAGCA
ACATGACAACAGAGAACTGAAATCTCAGAAAGCTCACAAAATAAAACAGT
CATTTGTACGCAATCATCAAAATCAACTACAAAACTTTATAACGAAACAA
CGAAACCTTTTAAAACATGGACAGAATAGTTTAATACAAAACCAAGGACA
AATACCCAACATGCGTGACGTTGAACTAGATATCACAGATAAGAATGACA
CAATTACATATAGGTCAAAAAATTCGAAAGCTTCCTAGAATTGTTTTAGT
TTATTTCTTGTCTTTAGCATTTAGTTTCCTCGCTTTATTTTATTACAACT
CCTCCCCTCCTTATTAAGTTTTAAAATTTTCCAACCTCCCCCTCCCCCCG
TAGTGTGAACGAAGGCTAGATGAAATTCGTGATTTATTTATCGATACTTT
AGGTCGCTTATAACCGAATGACACCGTTTTTTTGCATTTGAATATTTCGA
TGCAAATGTCCTTTTTCTAATAAGGTCAAACGAAATGAACAAAATAAACT
CTGCGGAATTGGATAGATCTTATCTCACTAGTAACTTTTTGTTATCGAGT
TCTAGTGATCAAAATGGAGAAACAAGCTTAACTTGTTTGATAGCACATCA
TAACTTGTTTTGTCTTTGGAGAGAGGGAAGTCAGACGGACGTACCTTTTT
ATAATGGGTTATAAGTAGACATTACATGTATTTTTACAAGTAGAATTACG
CAGTTTCTGTCTGATGGGCTGATTATTTATAATCTTTTATTTTAAGCATA
TAATATTTTTTAAAGTTTTAATTTTGATATACTTTGTTTTATCATTAATA
TTTGAATTTTGCGTTTATTTATTAGAGTTGTAAATTTTCTAGTTTTGTAT
TCACGTTTTTATCACAGGTTTTGAAAGTTTCATTATTCCACTCCATTTTT
ACTTAAGCCTCTTTACATTAAACCTACGGAGGCCTGGAGACCAGAGTTAA
AGTTCCCATGTTTGAAAAGCCTAAGCTGACTTTTTAAGGTCTTAAGACTA
AAAATGTTTTCAATGTCGCCATATTGTGAGTATTTTTTTATGCATTTACT
AAAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_039480XLOC_039480Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00063024-exon-scaffold_376-1575043694:103065..106018TCONS_00063024-exon-scaffold_376-1575043694:103065..106018Clytia hemisphaericaexon
TCONS_00063024-exon-scaffold_376-1510915933:103065..106018TCONS_00063024-exon-scaffold_376-1510915933:103065..106018Clytia hemisphaericaexon
TCONS_00063024-exon-scaffold_376-1491911889:103065..106018TCONS_00063024-exon-scaffold_376-1491911889:103065..106018Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_376supercontigscaffold_376:103065..106018 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
7.04292	6.46321	4.79252	4.22372	7.10244	4.87562	5.21757	5.05972	1.6077	2.7666	2.03361	1.20376	1.58338	1.44363	1.83592	2.52554	2.58523	2.92144	1.20017	1.08054	1.6166	1.29518	9.45109	9.145	4.18025	4.71846	1.73497	1.42924	7.32841	8.71373
Blast
[Close]
BLAST of TCONS_00063024 vs. Swiss-Prot (Human)
Match: ZKSC8 (Zinc finger protein with KRAB and SCAN domains 8 OS=Homo sapiens GN=ZKSCAN8 PE=1 SV=2)

HSP 1 Score: 102.449 bits (254), Expect = 2.388e-22
Identity = 72/222 (32.43%), Postives = 101/222 (45.50%), Query Frame = 3 
Query:  147 VCEKTFTKK---LLHEK-HNKM--YNCKDCGKCFSSKHGLRLHQMYH---QPFTSLECEKVNVSSNS----------------NERGKSFTQEDHLHRFHEESSDEPRFPCEKCGMTFTRKFNLKKHVDGFRCPNGRDKLKCPKCADLFTRKADFNAHTRSQHPDICFKCTECDNIFTSRVDLNNHTKRHV-RKNFECTECGETFTQIIALNSHLRLHYLQK 734
            VC K F+ +   L H+  HNK+  Y+CK+CGK FS   GL LHQ  H   +P+   +C K    S                  NE GK+F+   HL       + E  + C++CG TF R  +L  H    R   G    KC +C   F++K+    H R    +  +KC EC   F     L  H + H   K ++C ECG+ F Q  +L  H R+H  +K
Sbjct:  354 VCGKAFSYRSALLSHQDIHNKVKRYHCKECGKAFSQNTGLILHQRIHTGEKPYQCNQCGKAFSQSAGLILHQRIHSGERPYECNECGKAFSHSSHLIGHQRIHTGEKPYECDECGKTFRRSSHLIGHQ---RSHTGEKPYKCNECGRAFSQKSGLIEHQRIHTGERPYKCKECGKAFNGNTGLIQHLRIHTGEKPYQCNECGKAFIQRSSLIRHQRIHSGEK 572
The following BLAST results are available for this feature:
BLAST of TCONS_00063024 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
ZKSC82.388e-2232.43Zinc finger protein with KRAB and SCAN domains 8 O... [more]
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