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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00063070 ID=TCONS_00063070|Name=TCONS_00063070|organism=Clytia hemisphaerica|type=transcript|length=2203bp
AGTTTCacttttcaaactgccatgacaataaaataaaagaccCAGATAGA
AGAATTTCTACAAGTAGCATATAACTTTAAcattattcaaagaaaaataa
tttctttaataCTAACTTTCTCTGTAATAATTAGCTCTCtttctttattt
acaatgcatAAGTATCTTTTATTAACTATTGAATATGACgcaaaaaaaga
atcttttttctcttttttttcttattattaattatatgcgtctttttatt
ttgtgtttttctctTATTctatcttattaaaaaaaattatttttgcgcGC
TAAGTAATCCTGATATCCCGTTTCCCGAAAATAATCTGAAATCGGAATTA
AAACTGAAAGTCGTAACGACCACCACCATCTGGAAAAAAGTCGTTGAACC
GATTTGAAGAGTTACCACGGactaattataccacatttgaATTTTCGCAT
TTTATGATATTTAGAGGTGACATCCCAACTCATTTTGCCACAACAAACAT
CAAGCCCGGCAACCAAGAATTTACCTCAATTGCCATGGTAAAGcccaggg
ctgcaaataaatatttttagtcaatcggacatcatgtcaGGAATGAGATG
AAATTCTGTCGGTCAAACTCTAAATGaaagggacgagatggagtttttac
aagctcttatttgatttggtagGTTGTTAACTAGTAATAAAACAATATTG
TTACTTtctctaaagaacgcgtcatttttattacttcaaatgaccaatta
ttaaagtatcttataaaaactccatctcatctgaaatgaaatcctgtcgg
tcattcagtCTATAAGTTTTCTAAAATAATACAGTCTTGAAAGTTATGGA
GAAAGTGACCTTAGAAagacccttgaaagttacgacgataacgagttgat
aaaagtgagcTTAGagacactcttgaaagttacgaagaaagcaaatcGAT
AAAAAGTGAACATataaacacccttgaaagtttaCGAAGATAGCAAGTCG
ATACAAAGTGAACTTAGAAATATCCGTTAATAAAAACGCATGAAATCAAA
GTAAactttagaaacactcttgaaagctaaaagaaagtaAAAGAGTAGTA
ATAGACAaagagacagggatgtgaaagatttgttttaaactcaaattaat
gtgttttttttttcatacgGACATCATGACTGACACTAATGATTCTCAGT
CGGTCAAATGGCTTTTTCAGATGGATATTGACCGATGaccgacgcttatt
tgcagccctgaaAGCACATCCTTTGTTTCACCCACAATCTTTACTTTCAC
CATTGATCCCACAATTTATGCAATATTTTATGagagaattgaaatatttc
aaaatataatggAGATAATCTTCAAGCCTTTCTTATTGATATTGGTTTGC
TGGAATGTAATGTTATTACTCAAAACCATAAAGGCAGAGATACTGGATTT
AATGGCAAATGTCAAATGTCTGGTCTTGAGTTAAATATGAATATATCGAA
AGTATTATTTTGCTAAATAGTGTATATAAGCAGTGGGATATTTAGGATAA
AAACGACAATTAGTGCTCAGTTCCGGCAAAAATATTGCAGAAATACTGGT
GGCAACCAACGAAAGATTGTTCTGTTCGCATCACACATCTGCTTCATCAT
TTCCACTGATTATCTGGTGTTGAGAagcaaattgttcttttaaagtatag
ccaAAGCCCTTCTCCGcaacaaacaaacacaaaaacaaaacaaaatcact
GATAAATTAATTTGAAACAGTGGGGGAGAGCAACATTGTTTTAGCAATAC
TTACCAAGAACAAAACTTGTTTGCTTTCTTGCATGatttctgaaaaccca
aaaatctCTCAGCCTACCAGCATGTATTTTTCAACACACGCGGGGAGgcg
aacagaacaatttttcgatggctgCCTAACAAATGTCAATGTAAAATGCT
CCTACCTCCTTTAAACATATTAACATTTGCTGTGACAAGATGAGTATGGT
TATCCAGTCAGgactctttggtcttttttaacattagttcggatagaata
aaaacatacctgatcaacacaaccaaaccttctgtcttgcgtttactctT
TTCTTCCCAACaactttcgtttttgcttatgtaggttttaaaatccacaa
gtaatgaacctcttatagctttatctgaataaatctggttgaaaaccttc
tgt Run BLAST on NCBI transcript from alignment at scaffold_379:95435..97716- Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00063070 ID=TCONS_00063070|Name=TCONS_00063070|organism=Clytia hemisphaerica|type=transcript|length=2282bp|location=Sequence derived from alignment at scaffold_379:95435..97716- (Clytia hemisphaerica)
AGTTTCACTTTTCAAACTGCCATGACAATAAAATAAAAGACCCAGATAGA
AGAATTTCTACAAGTAGCATATAACTTTAACATTATTCAAAGAAAAATAA
TTTCTTTAATACTAACTTTCTCTGTAATAATTAGCTCTCTTTCTTTATTT
ACAATGCATAAGTATCTTTTATTAACTATTGAATATGACGCAAAAAAAGA
ATCTTTTTTCTCTTTTTTTTCTTATTATTAATTATATGCGTCTTTTTATT
TTGTGTTTTTCTCTTATTCTATCTTATTAAAAAAAATTATTTTTGCGCGC
TAAGTAATCCTGATATCCCGTTTCCCGAAAATAATCTGAAATCGGAATTA
AAACTGAAAGTCGTAACGACCACCACCATCTGGAAAAAAGTCGTTGAACC
GATTTGAAGAGTTACCACGGACTAATTATACCACATTTGAATTTTCGCAT
TTTATGATATTTAGAGGTGACATCCCAACTCATTTTGCCACAACAAACAT
CAAGCCCGGCAACCAAGAATTTACCTCAATTGCCATGGTAAAGCCCAGGG
CTGCAAATAAATATTTTTAGTCAATCGGACATCATGTCAGGAATGAGATG
AAATTCTGTCGGTCAAACTCTAAATGAAAGGGACGAGATGGAGTTTTTAC
AAGCTCTTATTTGATTTGGTAGGTTGTTAACTAGTAATAAAACAATATTG
TTACTTTCTCTAAAGAACGCGTCATTTTTATTACTTCAAATGACCAATTA
TTAAAGTATCTTATAAAAACTCCATCTCATCTGAAATGAAATCCTGTCGG
TCATTCAGTCTATAAGTTTTCTAAAATAATACAGTCTTGAAAGTTATGGA
GAAAGTGACCTTAGAAAGACCCTTGAAAGTTACGACGATAACGAGTTGAT
AAAAGTGAGCTTAGAGACACTCTTGAAAGTTACGAAGAAAGCAAATCGAT
AAAAAGTGAACATATAAACACCCTTGAAAGTTTACGAAGATAGCAAGTCG
ATACAAAGTGAACTTAGAAATATATCCGTTAATAAAAACGCATGAAANAC
GCTTGAAAGTTTCCGCAGAAAGCAAGTGGGTAAAAAGTGAACTTAGAAAC
ATCCGTTAATAAAAACGCATGAAATCAAAGTAAACTTTAGAAACACTCTT
GAAAGCTAAAAGAAAGTAAAAGAGTAGTAATAGACAAAGAGACAGGGATG
TGAAAGATTTGTTTTAAACTCAAATTAATGTGTTTTTTTTTTCATACGGA
CATCATGACTGACACTAATGATTCTCAGTCGGTCAAATGGCTTTTTCAGA
TGGATATTGACCGATGACCGACGCTTATTTGCAGCCCTGAAAGCACATCC
TTTGTTTCACCCACAATCTTTACTTTCACCATTGATCCCACAATTTATGC
AATATTTTATGAGAGAATTGAAATATTTCAAAATATAATGGAGATAATCT
TCAAGCCTTTCTTATTGATATTGGTTTGCTGGAATGTAATGTTATTACTC
AAAACCATAAAGGCAGAGATACTGGATTTAATGGCAAATGTCAAATGTCT
GGTCTTGAGTTAAATATGAATATATCGAAAGTATTATTTTGCTAAATAGT
GTATATAAGCAGTGGGATATTTAGGATAAAAACGACAATTAGTGCTCAGT
TCCGGCAAAAATATTGCAGAAATACTGGTGGCAACCAACGAAAGATTGTT
CTGTTCGCATCACACATCTGCTTCATCATTTCCACTGATTATCTGGTGTT
GAGAAGCAAATTGTTCTTTTAAAGTATAGCCAAAGCCCTTCTCCGCAACA
AACAAACACAAAAACAAAACAAAATCACTGATAAATTAATTTGAAACAGT
GGGGGAGAGCAACATTGTTTTAGCAATACTTACCAAGAACAAAACTTGTT
TGCTTTCTTGCATGATTTCTGAAAACCCAAAAATCTCTCAGCCTACCAGC
ATGTATTTTTCAACACACGCGGGGAGGCGAACAGAACAATTTTTCGATGG
CTGCCTAACAAATGTCAATGTAAAATGCTCCTACCTCCTTTAAACATATT
AACATTTGCTGTGACAAGATGAGTATGGTTATCCAGTCAGGACTCTTTGG
TCTTTTTTAACATTAGTTCGGATAGAATAAAAACATACCTGATCAACACA
ACCAAACCTTCTGTCTTGCGTTTACTCTTTTCTTCCCAACAACTTTCGTT
TTTGCTTATGTAGGTTTTAAAATCCACAAGTAATGAACCTCTTATAGCTT
TATCTGAATAAATCTGGTTGAAAACCTTCTGT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00063070-exon-scaffold_379-1575043694:96696..97716 | TCONS_00063070-exon-scaffold_379-1575043694:96696..97716 | Clytia hemisphaerica | exon |
| TCONS_00063070-exon-scaffold_379-1575043694:95435..96616 | TCONS_00063070-exon-scaffold_379-1575043694:95435..96616 | Clytia hemisphaerica | exon |
| TCONS_00063070-exon-scaffold_379-1510915933:96696..97716 | TCONS_00063070-exon-scaffold_379-1510915933:96696..97716 | Clytia hemisphaerica | exon |
| TCONS_00063070-exon-scaffold_379-1510915933:95435..96616 | TCONS_00063070-exon-scaffold_379-1510915933:95435..96616 | Clytia hemisphaerica | exon |
| TCONS_00063070-exon-scaffold_379-1491911889:96696..97716 | TCONS_00063070-exon-scaffold_379-1491911889:96696..97716 | Clytia hemisphaerica | exon |
| TCONS_00063070-exon-scaffold_379-1491911889:95435..96616 | TCONS_00063070-exon-scaffold_379-1491911889:95435..96616 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_379 | supercontig | scaffold_379:95435..97716 - |
Blast
The following BLAST results are available for this feature:
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