|
|
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00063102 ID=TCONS_00063102|Name=TCONS_00063102|organism=Clytia hemisphaerica|type=transcript|length=602bp
CATCAAAGTTTGTTGCGGAGTATGGCTTCTATCCCTTGTCATGACTTTGT
TGTGCTACATTTTTGTTACATATTGCGTAAAAAACAGTTTGCGATACAAA
GATGCTATCTTTCCTATTGCGACGATTCCGGCAACTGTGTTGTTTGTTGT
GAGTTACACGATGATTTTTACTGTCGTTTGTCGTACTTCAAAGACCGTCA
AAAAGATTGAAGCATCCGTCAGGAGTCAACAAGCACCACAGAAAATCCCA
AAAGACAAGATTGCATTTGCACGGCTTGCAGTAAAGACAGTAGCTGTATT
CGTTATATGTTGGTTACCTTTGTCAATCCTTTCCATCTACAAATTATTCA
GCACAGAAACTCCAGACCCAACCTTTGGTACATTGTTTGTGCTAGCCCTA
CTTAATTCTTTGATAGACCCATTCGTGTATTTTGCACATTTTCAATGTGC
CATTCGAGAACTTTTTGGTTGCTGTATTAAGAATAGGCGCAGAAGCCGTT
CAGATACAgcttgatttgatttgattactTGATGCAATTTTGATTCATAA
TCCAAATTTCTTTTAGTTTAGTACGATAAGGGTAAAAGCGGGTTGGTGGC
AG Run BLAST on NCBI protein sequence of TCONS_00063102-protein >TCONS_00063102-protein ID=TCONS_00063102-protein|Name=TCONS_00063102-protein|organism=Clytia hemisphaerica|type=polypeptide|length=170bp
IKVCCGVWLLSLVMTLLCYIFVTYCVKNSLRYKDAIFPIATIPATVLFVV
SYTMIFTVVCRTSKTVKKIEASVRSQQAPQKIPKDKIAFARLAVKTVAVF
VICWLPLSILSIYKLFSTETPDPTFGTLFVLALLNSLIDPFVYFAHFQCA
IRELFGCCIKNRRRSRSDTA Run BLAST on NCBI transcript from alignment at scaffold_38:97098..98935- Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00063102 ID=TCONS_00063102|Name=TCONS_00063102|organism=Clytia hemisphaerica|type=transcript|length=1838bp|location=Sequence derived from alignment at scaffold_38:97098..98935- (Clytia hemisphaerica)
CATCAAAGTTTGTTGCGGAGTATGGCTTCTATCCCTTGTCATGACTTTGT
TGTGCTACATTTTTGTTACATATTGCGTAAAAAACAGTTTGCGATACAAA
GATGCTATCTTTCCTATTGCGACGATTCCGGCAACTGTGTTGTTTGTTGT
GAGTTACACGATGATTTTTACTGTCGTTTGTCGTACTTCAAAGACCGTCA
AAAAGATTGAAGCATCCGTCAGGAGTCAACAAGCACCACAGAAAATCCCA
AAAGACAAGGTTAGTAATCAACCATTATCTATTTTTCAAGAAGATTATCA
CGTAGAGAATAAAGTGTCTACTTTGCATCTATTGTTTCGTTTTCAAAACA
AAGTTAAAACACATGCGTATTTATAAACTGTTAGTCGTTATTATACACAA
TGGGCTTTTCCAGAAAAAAAGCGTACACTCCCTGTTGAGGAGCTCCAACC
TTTTGTGAACTACCCCCTTGGAATTCCAGGTAATTTTAGGATCATACCCC
TCTGGAATTCCGAATTTTTACAGATTTTTCATTCATTACCCCCATGGAAT
TCCAATTATTTTTGACGGATTTTTGTCTACTGCTATGTAATTCCACTGCA
TTTTGAACCATACCCCATTGGAATGGAAATGGACTCTTCAACCGGTGCGC
GGTTTTTTTCTGGAAAAGCCCAATTCACAGGGAGAAATGAATACCTAAAG
GCTGTACAGTCACTTTTTTCCGTGGTTGTGGATGGTGAAATTTGAAATGA
AAGTAAGCACTTTCTCCTCCACTTATAAGTCAATAACGCTAACTTTTTAA
TTACAATTGATGACTGTACTCTATTGCTCTAGAAAGTCGATTTTAGTAGG
GGGCCGCGCCTGGGGTCCCTAACTAAAAAAAAACAAAAAAATACAGCCGC
TTTAAGACCAACAAACTGTCAGCTCTTCTTTGTGATTTGACGTCAAATCT
TGTCTTGATCGTACTGACTGACGTCGGTATGTTCTTGAACTTCAAGAGGC
TGCATTATAATTTGTGTGTTTTAGTCAGAGAGTTGTTTTAATACAATTTT
TGCTCAGAATTTTATAGTTTTTCAGATGGTACCAATCATTTTCGTTTGTT
TTGACTTTTGAAAATAAGCTATTTCTCTACCCCTTATTATCCCTTGCAGT
TTTGCCTATGGCGTCACTACTTTGGTCACAAAAAGTTTTCCCGGGCCTAA
TCTGCATCGTCCCTCTCAAAATACCTTTGAATATACTGTTCTTTGGAATA
GACTAAGAATGGTTAGGTCGTAAAAAAGATGTCACGGAACCCCAGGCTTG
GCCCCCTACTATTTATCCCATTTTTTGGGAATTTTCTTTGTGCAACTCTC
ATTTTAAGAACTATTCATAATGTGGTCCAATTGGGCATGTACATCTGCGC
ACATCTTTAATTTTAGCTTTACGCATTGTTCGTGTTTTTGAGTTAGCACA
ATGTGTCATAGAAAGATATATTTACACGATAGTCTTTATTTTTAGATTGC
ATTTGCACGGCTTGCAGTAAAGACAGTAGCTGTATTCGTTATATGTTGGT
TACCTTTGTCAATCCTTTCCATCTACAAATTATTCAGCACAGAAACTCCA
GACCCAACCTTTGGTACATTGTTTGTGCTAGCCCTACTTAATTCTTTGAT
AGACCCATTCGTGTATTTTGCACATTTTCAATGTGCCATTCGAGAACTTT
TTGGTTGCTGTATTAAGAATAGGCGCAGAAGCCGTTCAGATACAGCTTGA
TTTGATTTGATTACTTGATGCAATTTTGATTCATAATCCAAATTTCTTTT
AGTTTAGTACGATAAGGGTAAAAGCGGGTTGGTGGCAG Coding sequence (CDS) from alignment at scaffold_38:97098..98935- >TCONS_00063102 ID=TCONS_00063102|Name=TCONS_00063102|organism=Clytia hemisphaerica|type=CDS|length=1026bp|location=Sequence derived from alignment at scaffold_38:97098..98935- (Clytia hemisphaerica)
ATTGCATTTGCACGGCTTGCAGTAAAGACAGTAGCTGTATTCGTTATATG
TTGGTTACCTTTGTCAATCCTTTCCATCTACAAATTATTCAGCACAGAAA
CTCCAGACCCAACCTTTGGTACATTGTTTGTGCTAGCCCTACTTAATTCT
TTGATAGACCCATTCGTGTATTTTGCACATTTTCAATGTGCCATTCGAGA
ACTTTTTGGTTGCTGTATTAAGAATAGGCGCAGAAGCCGTTCAGATACAG
CTTGAATCAAAGTTTGTTGCGGAGTATGGCTTCTATCCCTTGTCATGACT
TTGTTGTGCTACATTTTTGTTACATATTGCGTAAAAAACAGTTTGCGATA
CAAAGATGCTATCTTTCCTATTGCGACGATTCCGGCAACTGTGTTGTTTG
TTGTGAGTTACACGATGATTTTTACTGTCGTTTGTCGTACTTCAAAGACC
GTCAAAAAGATTGAAGCATCCGTCAGGAGTCAACAAGCACCACAGAAAAT
CCCAAAAGACAAGATTGCATTTGCACGGCTTGCAGTAAAGACAGTAGCTG
TATTCGTTATATGTTGGTTACCTTTGTCAATCCTTTCCATCTACAAATTA
TTCAGCACAGAAACTCCAGACCCAACCTTTGGTACATTGTTTGTGCTAGC
CCTACTTAATTCTTTGATAGACCCATTCGTGTATTTTGCACATTTTCAAT
GTGCCATTCGAGAACTTTTTGGTTGCTGTATTAAGAATAGGCGCAGAAGC
CGTTCAGATACAGCTTGAATCAAAGTTTGTTGCGGAGTATGGCTTCTATC
CCTTGTCATGACTTTGTTGTGCTACATTTTTGTTACATATTGCGTAAAAA
ACAGTTTGCGATACAAAGATGCTATCTTTCCTATTGCGACGATTCCGGCA
ACTGTGTTGTTTGTTGTGAGTTACACGATGATTTTTACTGTCGTTTGTCG
TACTTCAAAGACCGTCAAAAAGATTGAAGCATCCGTCAGGAGTCAACAAG
CACCACAGAAAATCCCAAAAGACAAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00063102-exon-scaffold_38-1575043694:98677..98935 | TCONS_00063102-exon-scaffold_38-1575043694:98677..98935 | Clytia hemisphaerica | exon |
| TCONS_00063102-exon-scaffold_38-1575043694:97098..97440 | TCONS_00063102-exon-scaffold_38-1575043694:97098..97440 | Clytia hemisphaerica | exon |
| TCONS_00063102-exon-scaffold_38-1510915933:98677..98935 | TCONS_00063102-exon-scaffold_38-1510915933:98677..98935 | Clytia hemisphaerica | exon |
| TCONS_00063102-exon-scaffold_38-1510915933:97098..97440 | TCONS_00063102-exon-scaffold_38-1510915933:97098..97440 | Clytia hemisphaerica | exon |
| TCONS_00063102-exon-scaffold_38-1491911889:98677..98935 | TCONS_00063102-exon-scaffold_38-1491911889:98677..98935 | Clytia hemisphaerica | exon |
| TCONS_00063102-exon-scaffold_38-1491911889:97098..97440 | TCONS_00063102-exon-scaffold_38-1491911889:97098..97440 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_38 | supercontig | scaffold_38:97098..98935 - |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: Biological Process
| Term | Definition |
|---|
| GO:0007186 | G-protein coupled receptor signaling pathway |
Vocabulary: Molecular Function
| Term | Definition |
|---|
| GO:0004930 | G-protein coupled receptor activity |
Vocabulary: Cellular Component
| Term | Definition |
|---|
| GO:0016021 | integral component of membrane |
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
| Category |
Term Accession |
Term Name |
| biological_process |
GO:0007186 |
G-protein coupled receptor signaling pathway |
| cellular_component |
GO:0016021 |
integral component of membrane |
| molecular_function |
GO:0004930 |
G-protein coupled receptor activity |
Blast
The following BLAST results are available for this feature:
|
