TCONS_00063109 (transcript) - C. hemisphaerica

Overview
NameTCONS_00063109
Unique NameTCONS_00063109
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length3911

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00063109 ID=TCONS_00063109|Name=TCONS_00063109|organism=Clytia hemisphaerica|type=transcript|length=3911bp
GAAAAAGTGCaagttttgttgtttgtgagatgagtaaaaaggcgtttTAA
AGTGGttatattttattaaaagtgaAATTAAAGGTACAATGAAGTAGTAG
GGAGcatgtattttttaattcagGCTAACCTTTCCATTTGCATCTGCAAA
GATGACTGATTGATTGGTGTTCTGTAACGCCCATAAAAAAGATTCAAGCC
TAGTGACTTTCATAAATATAAGCAAATATGGCTGCTTCCTGCCCCAAAGA
ATATGGGTTCGATGTTAAATTTGCTGAAAAACTGGATAGGGACAATATAG
AGTGTACCATATGTTTTATGGTTTTACGAGAACCGCTCCAAGGGTCAAAA
TGTGGTCATAGATATTGCAAGAAATGTATTGAAGAATTCCATGAAAAGAA
CCCAAAGAAATGTCCGCAAGATTGGCAAGAGAACGAGTGGTTTAAAGACT
TGGGAAAGGAACGAGAGATTCTTGACTTGAAGATTCGATGTAAAAATCAT
CGCGATGGATGCACCTGGCAGAACGAACTTCGAGATCAAGAGgaGCATTT
GAAGACATGTGATTACGAAACTATTCAATGTAATCTACGATGTGGAGAGC
CCGTGCTACGCATAAACcttcaaaatCACTTGGATAAAGACTGCCCATTG
ATCTCAACGTGCGAGTACAGCGATTTTGGGTGTCTTTTTAAGGGTACAAG
AGACCAACTGTACAATCACATATCACGAGCGATCAATCAACATTTCTCCC
TTGAAATGAAGCATGAAATTCGAAACCTCAAACAAGAATTCAGTGACAAA
TTACACGAAAAAGATCTCAAAATTCAAGAGATAACAAAGGAGTTTGATGC
CCAACAGAAGGAAAGAgatgaaaaaatccaaaatctgTCTGAAAAGTTTG
ACTGCCAACTGAAGGAAAAAGATGACGAAATCAAACGATTGAGAGAAGAT
GTCGATGGCGCTAAAAAGGATCTCCAACGAGCTTCCAATGAAAACAATGA
GAACCACAAAGCCATCGAAGAAACCAAAAAGGACTTCATCGGAGTTGTCA
ATGAAATAAAGACCGAACAAGAGAAAGCCATCCAAGAAACCAAAAAGGAT
TTCAACCGAGTTGTGAATCAAACCAAAATTGAGCAACAAAAAGCCATCGA
AGAAACCAAAAAGGATGCCACCCGAGTTATCGATGAAACTAAAATTGAGC
AACAAAAAGCCATCGAAGAAACCAAAAAGGATGTCACCCGAGTTATCGAT
GAAACTAAAATTGAGCAACAAAAAGCCATCGAAGAAACCAAAAAGGATAT
CACCCGAGTTATCGATGAAACTAAAATTGAACAACAAAAAGCCATCGAAG
AAACCAAAAAGGATGTCACCCGAGTTATCGATGAAACTAAAATTGAACAA
CAAAAAGCCATCGCAGAAACCAAAAAGGATTTCACCCGAGTTATCGATGA
AACTAAAACTGAACAACAAAAAGCTATCGAAGAAACCAAAAAGGATTTCA
CCCGAGTTATCGATGAAACTAAAACTGAACAACAAACAGCCATCGAAGAA
ACCAAAAAGGATTTCACCCGAGTTATCGATGAAACTAAAATTGAACAACA
AAAAGCCATCGCAGAAACCAAAAAGGATTTCACCCGAGTTATCGATGAAA
CTAAAACTGAACAACAAACAGCCATCGAAGAAACCAAAAAGGATTTCACC
CGAGTTATCGATGAAACTAAAATTGAACAACAAAAAGCCATCGCAGAAAC
CAAAAAGGATTTCAACCGAGCTATCGATGAAACTAAAACTGAACAACAAA
AAGCCATCGAAGAAACCAAAAAGGATGTCACCCGAGTTATCGATGAAACT
AATACTGAACAACAAAAAGCCATCGAAGAAACCAAAAAGGATTTCACCCA
AGTTATCGATGAAACTAAAACTGAACAACAAAAAGCCATCGAAGAAACCA
AAAAGGATTTCAACCGAGCTATCGATGAAACTAAAATTGAACAACAAAAA
GCCAGCGAAGAAACCAAGAAGGATTTCACCCGAGTTACCAATCAAACTAA
AACTGAACAACAAAAAGCCATggaagaaattaaaaataatttcaccCGAG
TTGTCAATGAAATAAAGACCGAACAAGAGAAAGCCATCGAAGAAACCAAA
AAGGATTTCAACCGAGTTGTGAATCAAACCAAAACTGAACAACAAAAAGC
CATTGAAGAAACCAAAAAGGATTTCACCCGAGTTGTCAATGAAACCAAAA
CTGAACAACAGAAAGCTCTAAACAAATCAATGGAAATTATATCTATGATG
CTTTATATTACGGATAAAAACACTCATGAATTTATAAACGGATCACTGAG
GGAAAGGAGTGATCATGTTCataatttaaacaaaaaactagCCGAAGAAA
ACAAACTGACATTGCAGATTTTAAGCTTACCACAATGCCCTTATTCTTTC
ACTATCGAGAATTTCAAATTCCAATTTGAAGAggctaaaaaaacaaataa
aagaactTCCTCTCCAAACTTCCTCACTGTAAATGGGTACTTAGGACGTC
TAAATATCTATTTAAATGGGTATCGCAGTGCTCAAGACAATCACGTGTCA
GTGTTCTTTCAGAACCTAAAAGGACCAtatgataattttttgaaatggcC
AATACCTTGGAAATCGCACTCAATGACACTTCTTGTTAACAACAGAGAAA
TCGGAAAGAAGTCAAGCCAAAATTCAGATGATGGAGGTAAATGGAAAGAT
AATTTCATACGACCCATTGGTGATGAAGGTAAAGATTTGGGAGTTTCAAA
AACCTTTGATCATAAATTGATAGAAAATCTTACTGATGAAGACGTAGTAG
CTATCAAGTTCGATATGGATTGTGAAGCTCAAGAGCATTGAATCCCGAAG
AGCTAGAAAGGAAtctagatttcgaaaaaagtaACGGAgctaaaacaaaa
agaaataacAAGATTCAATCAATCGTCCGATATGTAACGCAAACTCTAAA
GTTTCCTTTTTCGATCATTTATTTGAGCCCTTCAtgggcttaaaactcaa
tgcTTAAAAGTGTACTTGAGTCTTTagccttaagggctctggatataccc
aatttttcgattttacaccaacttaaatggcaatttctgcattttaaaaa
gattaatgtataactttttttatatgtcctgttaaacctacttttttaga
atttaaaaatcgaaaaattgaaatgaaaaaattaaacgaagaagaaaacg
aagagtttttcgcacctttcaaagccctaatctcggtaaaaatcaaacat
acaTCAGCGATATCGAAATCGGgaactttttttgtattttaaaatgttga
agtgttttctaagtattttctACAATCGCATTAACACAGATACATACCAC
ACAAACATTTTGGGAAACCAGGTCATAATACAGGGTTTCTGAATAAAGAA
AATGTCACTCAGCGATTGAACAATCTGGTTAATAACGCACTTTCATCAAA
TACAAAGAATGATTAAGTGAAAGTTGCCAGTTTCTAATAATTCTTGCTTG
TTATTGACTTGATTGTCGAAACACGCTAAATAGGTAcaattttagggttt
tttgTATAGTTTATCATTTTCTGTCTTACCATCTTGCTAATCTCCGAAGA
GATTCTGATTACTCCGTGCAAACACGCATGTACTCTAAAGTTCATGACTC
CGTATAAGAGTATCTACCCAAGAGCGAgcccttttatctttttttatttt
tggaatcAGTAGTAAATGAGCTTTTAAGCGTGGTGATTGGCTAACCAGAA
CAAACGTCAATCATATACACAATCATATACACAATCATATCAAGAACCCA
GTTGTTTTCGTTTTAAAATAAAGGGTAACGCAGTTTGGAATGTTTTGGCT
GAATAACCAGC
Run BLAST on NCBI

transcript from alignment at scaffold_38:275822..290594-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00063109 ID=TCONS_00063109|Name=TCONS_00063109|organism=Clytia hemisphaerica|type=transcript|length=14773bp|location=Sequence derived from alignment at scaffold_38:275822..290594- (Clytia hemisphaerica)
GAAAAAGTGCAAGTTTTGTTGTTTGTGAGATGAGTAAAAAGGCGTTTTAA
AGTGGTTATATTTTATTAAAAGTGAAATTAAAGGTACAATGAAGTAGTAG
GGAGCATGTATTTTTTAATTCAGGCTAACCTTTCCATTTGCATCTGCAAA
GATGACTGATTGATTGGTGTTCTGTAACGCCCATAAAAAAGATTCAAGCC
TAGTGACTTTCATAAATATAAGCAAATATGGCTGCTTCCTGCCCCAAAGA
ATATGGGTTCGATGTTAAATTTGCTGAAAAACTGGATAGGGACAATATAG
AGTGTACCATATGTTTTATGGTTTTACGAGAACCGCTCCAAGGGTCAAAA
TGTGGTCATAGATATTGCAAGAAATGTATTGAAGAATTCCATGAAAAGAA
GTAAGTTAATATTTTGATTCAATCATGGATTCCCTGGATTCCGTTAAACA
AACCCTTTGAAAAACCCAATAGCTTGGAAAAATTTGAATGTCTATAATAA
AATGTATCAAATACTGAAATATGTTAAAAGTGAAAGTTTAACAAAGTCAA
TAGTTTGGTAACTTGACCAAAGCATATCGATTTTTATTTTCAACATATTT
CGATATTTCACATATCATTTTCAGTAACTATTTAGTTCTATAATAAACAA
AAATTGGTTATCAAATGCGCATTATTATTAAAAACAGATTTTAGATAAAC
ACGGGATTTCATAATCATATAAAATCAACTTTTCAAAGTTTTCAGAATGG
TGAGTACACCCTTTAAGCGTTCATTCGAAGATATTCTCTCTCAGATAGGG
AATATTTCCCTCTAGAATACATGCTTCCCAAATAATGGACAGCAAAGTCC
GATTTCTCCTTTCCCACACTGTATGTTTTCCAGTGTTCTAAGACTACAAA
AGTGAAAGTTTATCACATATCAAGATTTTCAGAACATTTACTATACTATC
AATCACCATTCCTCACGAACATTTTCATTCCTCACAATTCCTTTTCTGTT
TCTCTTCTATTTCTCTTCTGTTTCTCTTCTGTTCCTCACTGTTCCTCTTC
TGTTCCTCTTCTGTTCTTCACTATCCCTCTTCTATAGAAGATGGATAGTG
AGGAACAGTAGGGAACAGAAGAGGAACACTGAGAAACAGAAGAGGAATAG
AAGAGAAACAGAAAAGGAATAGTGAGAAATGAAAATGTTCGTGAGGAATG
GTGATTGATAGTAGTGAATGTTCCGAAAATCTTGATATTGAGGAGCAGAA
GAGGAGCAAAAGAGGAACAAAAGAGGAGCAGTGAGGAATAGTAAAGAACA
GAAAAGGAACAGAAGAAGAAAATTGAGGAACAGAAGAGGAACAGTGAGGA
ACAGAAGAGGGACAGTGAGGAACAGAAGATAAATAGAAGAGGAACAGAAG
ATAAATAGAAGAGGAACAAAAGAGGAGCAGTGAGGAATAGAGGAGGGACA
GAAGATAAATAGAAGAAAATAGTGAGGAACAGAAGATAAATAGAAGAGGA
ACAGAAGATAAATAGAAGAGGAACAAAAGAGGAGCAGTGAGGAATAGAGG
AGGGACAGAAGATAAATAGAAGAAAATAGTGAGGAACAGAAGAGGAACAA
AAGAGGAGCAGTGAGGAATAGAGGAGGGACAGAAGATAAATAGAAGAAAA
TAGTGAGGAACAGAAGAGGAACAGCCAGGAACAGAGGATAAATAGAAGAA
CCATAGTGAGGAACAGAAGAGAAATAGAAGAGAAATAGTGAGGAACAGAA
GAGGAAGAGTGAGAAATAGAAGAGAAATAGAAGAGGGATAGTGAAGAACA
GAAGAGGAACAAAAGAGAAACAGTGAGGAAAAGTGAGGAACAGAAGAGGA
TCAGAAGAGGAAAAGTGAGGAAAAGAAGAGGAACAGAAGAAGAAAGGTGA
AAAAAAGAAGAGGAATAGTGAGGAACAGAAGAGAAACAGAATAGGAACAA
TGAGGAACAGAAGAGGAACAATGATGAACAGAAGAGAAATAGAAGAGGAA
CAAAAGAGGAGCAGTGAGGAATAGTGGGGAACAGAAGGGGAACAAAAGAG
GAAAAGTGAGGAAAGTGAGGAAAAGAAGAGGGACAGAAGAGGAAAAGTGA
GAAATAGAAGAGAAATAGACTAGGGATAGTGAAGAACAGAAGAGAAACAA
AAGAGGAACAGAAGAGGAAAAGTGAGGAATAGAAGAGGAACAGAAGAGGA
AAGGTGAAAAAAGAAAATAAATAGAAGAGGAACAGTGATGAACAGAAGAG
GAATAGTGAGGAACAGAAGAGGAACAGAAGAGGAAAGGTGAAAAAAGAAA
ATAAATAGAAGAGGAACAGTGATGAACAGAAGAGGAATAGTGAGGAACAG
AAGAGAAATAAAAGAGGATCAAAAGAGGAGAAGTGAGGAATAGTGAGGAG
CAGAAGAGGAAAAGTGAGGGAAAGAAGATGAACAAAAGAGAAATAGAAGA
GGAATAATGAGGAATAGAAGAGGAACAAAAGAGGAGCAGTGAGGAACAGA
AGAGGAACAAAAGAGGAGCAGTGAGGAAAAGAAGAGGAACAAAAGAGGAA
AAGTGAGGAATAGAAGAGCAACAGAAGAGGAAAGGTGAAAAGAAGAAGAG
GAATAGAAGAGGAACAGTGATGAACAGAAGAGAAATAGAAGAGGAACAGA
AGAGGAACAAAAGAAGAGCAGTGAGGAATAGTGAGGAACAGAAGAGGAAT
AGAAGAGGAACATAAAGAAAAGTGAGGAATAGAAGAGGAACAGAAGAGGA
AAAGTGAGGAATAGAAGAGGAACAATGAGAAATAGTGAGGAACAGAAGAG
GAACAAAAGAGGAGCAGTGAGAAATAATGAGGAACAGAAGGGGAAAAAAA
GAGGAAAAGTGAGGAAAAGTGAGGAATAGAAGAGGAACAAAAGAGGAAAA
GTGAGGAATAGAAGAGAAATAGAAGAGGGATAGTGAAGAACAGAAGAGGA
ACAAAAGAGGAACAAAAGAGGAACAGTGAGGAACAGAAGAGGAACAGAAG
AGGAAAGGTGAAAAAAAGAAGAGGAATAGAAGAGGAACAGTGATAAAAAG
AAGAGAAATAGGAGAAGAACAGAAGAGGAATAAATAAGGAACAAAAGAGT
AGCAGTGAGGAACAGAAGAGGAACAAAAAAGGAACAGAAGAGGAACAGAA
GAGGAAAAGTGAGGAATAGAAGAGGGATAGTGAGGAACAGAAGAAAAATA
GTGAGGAACAGAAGAAGAATAGTGAGGAACAGAAGAGGAATAGTGAGGAA
CAGAAGAGGAACAGTGAGGAACAGAAGAGGAATAGTGAGGAACAGAAGAG
AAATAGAAGAGGAATAGTGAGGAACAGAAGAGGTATAAGAAAGTCAATGT
CACTGAACTTTACTAGCTAGCGTCAATATCTAATGGTACGCTGGTTTGTT
AGGGCCATGTACAAAACAGATATAATTAGCTAACTAACTAGGCCCAAAAG
CCAATATATTATGACTTAGCGTGCTAAATAAACATAGTGTTCTAACTCGA
CTTAACGTACTAACTTAGCTTAACGTGCTAACTCGACATTCAGTGTTTAG
CAAGTTATCAAGGATATCGAGGGCGACGATCAGGGAAGCCGATGCAAAAC
ATAGTCGATTGTTGATGTACGGTTCTCTGTTGCCTTTGCTCACCTTAACA
GCCGACGGTATTTTAGTGTTTTTACCGTCTTCGAGAAAATTGGACGGCGA
TTTAGCAACGTGTCGACTTTGCTTTATACCATTTCCTTCGATTTATCTTG
AATATATAAACTTGCTATTGAACGTTTTTTATAACAATAAGTATATTTTT
GGCTCAGGCTGGATTGTTCTTAATTTTTTGAAATTGTCAGGCTTAAATGT
TTTTAATAAGCTTAGTTACTTTACTTAAAACCTGAAAATAGTGGGAACTT
TATTTATTAAGTATGGCTTTAAATCAAATTTATTCCGGCTTGAACACCCC
CACCCTAATCTAGCGATGGGGGCGCACGAAAACGTTCTGGCATTCATCAG
CTTGTCTCAACAGGAAAAGTTCAAAATCTGTTAAAATTAGTGGTTTTTTA
GTAATAGACGATATCGGCTTAACGAGAAAACTCAGATTTGACCTCCGAAA
ATTGCCCACAATGTTTTGCGCGGAAAAAAGTTCACGGTGAAAATTTTTTC
TTATAAGCATCAACTTTATAAGAACACAATTCATAATTCTCCAAACAATA
GATATCAGCTTTCGACGTTTGGTTCTTTCAAAGCAAACATGGGATTGTGC
CTAAAGTAGAAACATTTATTTTTTCCATAAGCATCAACTTTATAAGAACA
CAATTCGTAACTCTTCAACAATATTTGTTAGCTATTGTTTGATAAATCAA
ATCTCTGAAAGCCTATTCCACTTAGAAAAAAATCCTTGTTCTTATAAAAT
TGTTGTAAACTAATGTTAGATTTAGGAAAATTCCCTATTTCTTTCAATAA
AGCCGTTGCAGAATGCCGATTCCACTTAGAAAAAAATCAATTTGTCTCCT
TTTAGATGGCCTAAAGTTTAATTTGTAAGGGTAAAATAGGAAAGGCATGT
AATTTTTTAAATATCTTTAACAATCAGTGTCAAAATATTCCTGAAATATA
TAACATTCTTCAGAATTTAAAGTTCAAGCAAGAATCACAACTTCAATAAT
CCCACTCTATTTCATTGGATAATTCAATCAAATATAATGACTTTGCTCGT
AGATCGAGCCATGAAAAGGAAAAGGGAGTTTTTTTATCATAAATTAGTCC
ATCCAATGGTAAAGACAACCAATAGAATTTTACTTCATCTCACTGTAATG
TAAAGAATTGCAATCCATATCTACAAAATCAATAAAGTTTACATAGGTGC
GACTATCTCGAGTCGAGGTTCTATCGAAGATTTCATTATATTGTACTTTT
TCATTAGGTAATTATTTTCCGATAAGAAAAATGGAAAATCCGAATCTTGC
GCTTACCTTGCTAGATGAGTGCACTTTGGATACTCTAATTTTTTTTGAGG
TTTCAGCCTAAAGATATTCTTAACTCCCTTGTCAACTTTGTAAAAACTAC
CGTATTTTTTCGAATAAACGCCCTGGGCGTCTTTTTGATTTTAAGACTTT
CAGGAGGGGTGTTTATTCGAGGGGTGTTAGAGAAAGGGGTGTTAATTAAA
AAATCCAAAACCTCCCATTGAGGGTAGGCGTCTTTCTCCTCAGAGAAGGA
GCATGTTTTCGAAGGAGCACGGTAATTAACGAAAGGTATATACCATTCTA
CCAAGAGTTATTTGATTCTCATAAAGTAGTTGCTTATAGGAAGAATTAAT
ATGCTCATAATATTATATGTTACCGTCCCTTGTTTACTTTATAAGAACTT
ATAATATTGAAAGGTGCGCTATGAAGATTTGATACTTATAAAATAGGTGC
TTATAAGTAAAGCAAATATGCTCATGTTATGCGCCGTTCTTTGTTTACTT
TGTAAGAACTAATTACCAAAAGGTATATCACCATCTATCAAGAGTTATTG
CTTTGATTCTTATAAAGTAGTTGCTTATAAGAAAAATAAATATGCACATA
TTATGCGCCATCCCTTATTTACTTTGTAAAAACTATTAACCGAAGGGTAT
ATCACCATCTATCAAGAGTTATTGCTTTCATTCTTATAAAGATGATGCTT
ACAAGAAAAATAGTCATATCCATTTTAGGCGCTATTCCATGTTTGCTTTG
AAAGAATCAATCACCCGATGCTAAAAAATCTTTCTTATAAAGTTGATACT
TATATACTTATAAGATATTACTTCTTGTATTTGAATCCAAAAGTCCAAAA
TAGGTAAAAATAATGGTAAAAGCTATCCATTGGTACCCCCCATTGATTTT
AAAGATCGTGTTTTACATATCTGCACAGAAATTTAATTACATATCTGCGT
CGCAGCTCGAAATTACATAGTTGCGCAAAATAGTTACATACCTTAGCGCT
TAGCTACCAAAGATGGCGGACGCAAAACCGTCGCTCCGGTATTAAAAGAA
GAAAATAAAGCGGAAAAGAAGATTAAAGGAGACGAAAGGCAAACAAAATT
TGCAAAAAGGTGATTGTCTTCATTTGAGATTCTTCCACAGCGCTCTTTTC
ATTCTCGAAAATGCCGAACGAAGCTGAAACGGCCGAAAATCGAAATCAAG
CAATCGTAAACAATCTTGTGGCGTGCGAGAGATGTGGACAGAGACGATTT
CGTTCGCAACGTGGTGTCCTGCAACATCTTCCACACTGCAATGGACCAGC
TCAACCACCTCCTGTACCACTACCACCTCGACCACCAGATCCACCTCNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNATATTTTACGTCATTGGAAAAAAAAAAAAAAAATAGTTACATAT
TTGCGCAAAATAATTACATATTTGCGCAGAAATTACATATCTGCGCAAAA
ATAATTACATATATGCGCAGAAATTACATATCTGCGCAAAAATTACATAT
CTGCGCACAACAACGTCCAAAACAACAGTAACACCCCGAAAATTTTTGTA
ATTTTCTTTTTGCCGCTTTTCTTTTACTGATGGCACGGAAAGGGTTAATA
TAACGGGTGTACTTATTTCAATCGTACTTGAAAGGTTAGTAATAATAACT
CATGTTTTTTCGATCGTTTTTCAGCCCAAAGAAATGTCCGCAAGATTGGC
AAGAGAACGAGTGGTTTAAAGACTTGGGAAAGGAACGAGAGATTCTTGAC
TTGAAGATTCGATGTAAAAATCATCGCGATGGATGCACCTGGCAGAACGA
ACTTCGAGATCAAGAGGTTTGATTCTTTCCGTAATGTCACAACTGCAGTT
TAGGTTAAAAAAAATAAAAACTTTAAAGGGGGGAGAGGAAGCTTAATTTA
AAACTACTGTTTTGAAAAAAAGATTAAGGTCTCGAAATTGCAGAAATGGT
CAAACCTTCTAAAATTTCTCCCAAAAAGCTTTTTTTTCTCACTTTTTACA
TCCGTACAGCCTTACGGCACATTTTCTCTCAAATCAAGCCCTACTGTACA
CTTTGGAAAACCTAAAAACAGGGCTGCAGTTTTAGGCACTAGCCCTCCCC
CCGTAGTTGTACGTTGTACACTGACTGGAAAAAATAATTTATCTCCCGTT
CGATTGAATACATGCTTTCTTTATAAGAACCAGTAGATTTTGGCACAGAC
TGGGTTGTTCTTAATTTTTTGAAATTTCAGGCTTAATGTTCTTATTAGGA
TGTTCTTATATGCTTAGTTTCTTTTCAGTTAAAATCAATTAAAATCAATA
CTGTCTCTGACTGTCTTAGTAATTTCTGAATTCTGAGCCTCAGATTGTTC
TTAATTTGTTCTTAGCTTTAGGCCCATTTTCAGCCTCATGTTTTTATAAA
AAAAGCGTGCACTGTGATTTTACAATATTTTGTTTTTTTATAGGAGCATT
TGAAGACATGTGATTACGAAACTATTCAATGTAATCTACGATGTGGAGAG
CCCGTGCTACGCATAAACGTAAGAAAGAGAACCGTTATCATGTCTTCAGA
GACAGAATTCATCTTTTCTTGTATTATATTATATTAGCCAGTACTAGTTT
TTATTAAGAACGCAGTAAAAACGTTGTTCTCGCCTAACCGCTAGCCGGTT
ATCTTCTTATCTCGGCTCTAAGATTATTGATTAGTCCAGGCTATTAGGCT
CCTTAAAATATTTATATATGTCCTTATGAATGAAATTTTTACTTCACTGT
TTTTAAATGCAACTTTTACTTCTGTGGGCCAATAATTTTCATTGACAAGA
ACTGTTAGAGCTTCCTTTTGACACAAACGAAACTTATCTACTGATTCTAC
TGATTATTAGGTACAGCCCTTAGTTGTGTGCGTTAATCAATTTCATTGAC
ATTGGACCCAATAAAATGTGAAGGGACGAACTTTAAATGGATGTAAATTT
TGAACATTATATTTAAATTTTAGCTTCAAAATCACTTGGATAAAGACTGC
CCATTGATCTCAACGTGCGAGTACAGCGATTTTGGGTGTCTTTTTAAGGT
AATTTTCTGAAAGTAAATATTTGAGGTGAGACCTTACTCTTGTCTCCCGA
ATAGACGTGGGTGGAGTCCGAATAAACAGGGGGATAGGAAAAATTTTTTA
AATTCTAATAAGCGGGGGGGGGATGGAATAAGAGGGCGGGAGGGCGGTAA
TTTGAAGACAGAATTTTTTTTTAACTGATATCAATTTCAACAAAAAAAAA
GACTTTAACAAATGGACACGCAAAATAAGAACCAATACTAACAAAAAGGA
AAATTTTACCAAGTTTAAGGTTTATCTACACTGTAATGAAATATTGAATT
ATTCGAAATTGATTAGCGAGGGGGGTCTTAATAAGAGCGGAAGGGGGATA
TATCTTTTTTTCTTTTAACAATTAGCAGGGAGGGGCGTCTATTTGNAAAT
AAGAACCAATAGTAACAAAAATGAAAATTTTACCAAGTTTAAGGTTTATC
TACACTGTAATGAAATATTGAATTATTCGAAATTAATTAGCGAGGGGGGT
CTTAATAAGAGCGTAAGAGGGATATATCTTTTTTCTCTTAACAATTAGCG
GGGAGGGACATCTATTTGGGAGACAAGAATAGAAGGGGGCGAAAAAATCC
TTAAACAATGTACATTCGATGAATAATTATGATCCTTACACATAGTTCTA
GTGGGGTCTGGGTAGGAAGATTCAATTTTTACCCCTATTTGAGGAACAAT
ATACCCCCCTTACGTAGCAAATGCCTTCCTTAATTATAAAGATCTTCTCA
GAAAACAGGAGACCAAATGAACCCTTTACACAATCTTTTGAAAATCTCAG
AATAAAGCACCCCATGCTCCCCAGGTTATTGGAGGTGATAAAAACTATGT
TACAGAGTCTATTAGTCGAAAAATGGAGCCTATTTTTGTATTATAAATTA
TATGCTTTCTTAAAGAAGAACAATTTTTTTAAATGCGTTTTGGTTTCTGT
AAAATCATCGAATCACGATGATGTATTAACTGTTTAATCGTTTCGACTTC
TCAGGGTACAAGAGACCAACTGTACAATCACATATCACGAGCGATCAATC
AACATTTCTCCCTTGAAATGAAGCATGAAATTCGAAACCTCAAACAAGAA
TTCAGTGACAAATTACACGAAAAAGATCTCAAAATTCAAGAGATAACAAA
GGAGTTTGATGCCCAACAGAAGGAAAGAGATGAAAAAATCCAAAATCTGT
CTGAAAAGTTTGACTGCCAACTGAAGGAAAAAGATGACGAAATCAAACGA
TTGAGAGAAGATGTCGATGGCGCTAAAAAGGATCTCCAACGAGCTTCCAA
TGAAAACAATGAGAACCACAAAGCCATCGAAGAAACCAAAAAGGACTTCA
TCGGAGTTGTCAATGAAATAAAGACCGAACAAGAGAAAGCCATCCAAGAA
ACCAAAAAGGATTTCAACCGAGTTGTGAATCAAACCAAAATTGAGCAACA
AAAAGCCATCGAAGAAACCAAAAAGGATGCCACCCGAGTTATCGATGAAA
CTAAAATTGAGCAACAAAAAGCCATCGAAGAAACCAAAAAGGATGTCACC
CGAGTTATCGATGAAACTAAAATTGAGCAACAAAAAGCCATCGAAGAAAC
CAAAAAGGATATCACCCGAGTTATCGATGAAACTAAAATTGAACAACAAA
AAGCCATCGAAGAAACCAAAAAGGATGTCACCCGAGTTATCGATGAAACT
AAAATTGAACAACAAAAAGCCATCGCAGAAACCAAAAAGGATTTCACCCG
AGTTATCGATGAAACTAAAACTGAACAACAAAAAGCTATCGAAGAAACCA
AAAAGGATTTCACCCGAGTTATCGATGAAACTAAAACTGAACAACAAACA
GCCATCGAAGAAACCAAAAAGGATTTCACCCGAGTTATCGATGAAACTAA
AATTGAACAACAAAAAGCCATCGCAGAAACCAAAAAGGATTTCACCCGAG
TTATCGATGAAACTAAAACTGAACAACAAACAGCCATCGAAGAAACCAAA
AAGGATTTCACCCGAGTTATCGATGAAACTAAAATTGAACAACAAAAAGC
CATCGCAGAAACCAAAAAGGATTTCAACCGAGCTATCGATGAAACTAAAA
CTGAACAACAAAAAGCCATCGAAGAAACCAAAAAGGATGTCACCCGAGTT
ATCGATGAAACTAATACTGAACAACAAAAAGCCATCGAAGAAACCAAAAA
GGATTTCACCCAAGTTATCGATGAAACTAAAACTGAACAACAAAAAGCCA
TCGAAGAAACCAAAAAGGATTTCAACCGAGCTATCGATGAAACTAAAATT
GAACAACAAAAAGCCAGCGAAGAAACCAAGAAGGATTTCACCCGAGTTAC
CAATCAAACTAAAACTGAACAACAAAAAGCCATGGAAGAAATTAAAAATA
ATTTCACCCGAGTTGTCAATGAAATAAAGACCGAACAAGAGAAAGCCATC
GAAGAAACCAAAAAGGATTTCAACCGAGTTGTGAATCAAACCAAAACTGA
ACAACAAAAAGCCATTGAAGAAACCAAAAAGGATTTCACCCGAGTTGTCA
ATGAAACCAAAACTGAACAACAGAAAGCTCTAAACAAATCAATGGAAATT
ATATCTATGATGCTTTATATTACGGATAAAAACACTCATGAATTTATAAA
CGGATCACTGAGGGAAAGGAGTGATCATGTTCATAATTTAAACAAAAAAC
TAGCCGAAGAAAACAAACTGACATTGCAGATTTTAAGCTTACCACAATGC
CCTTATTCTTTCACTATCGAGAATTTCAAATTCCAATTTGAAGAGGCTAA
AAAAACAAATAAAAGAACTTCCTCTCCAAACTTCCTCACTGTAAATGGGT
ACTTAGGACGTCTAAATATCTATTTAAATGGGTATCGCAGTGCTCAAGAC
AATCACGTGTCAGTGTTCTTTCAGAACCTAAAAGGACCATATGATAATTT
TTTGAAATGGCCAATACCTTGGAAATCGCACTCAATGACACTTCTTGTTA
ACAACAGAGAAATCGGAAAGAAGTCAAGCCAAAATTCAGATGATGGAGGT
AAATGGAAAGATAATTTCATACGACCCATTGGTGATGAAGGTAAAGATTT
GGGAGTTTCAAAAACCTTTGATCATAAATTGATAGAAAATCTTACTGATG
AAGACGTAGTAGCTATCAAGTTCGATATGGATTGTGAAGCTCAAGAGCAT
TGAATCCCGAAGAGCTAGAAAGGAATCTAGATTTCGAAAAAAGTAACGGA
GCTAAAACAAAAAGAAATAACAAGATTCAATCAATCGTCCGATATGTAAC
GCAAACTCTAAAGTTTCCTTTTTCGATCATTTATTTGAGCCCTTCATGGG
CTTAAAACTCAATGCTTAAAAGTGTACTTGAGTCTTTAGCCTTAAGGGCT
CTGGATATACCCAATTTTTCGATTTTACACCAACTTAAATGGCAATTTCT
GCATTTTAAAAAGATTAATGTATAACTTTTTTTATATGTCCTGTTAAACC
TACTTTTTTAGAATTTAAAAATCGAAAAATTGAAATGAAAAAATTAAACG
AAGAAGAAAACGAAGAGTTTTTCGCACCTTTCAAAGCCCTAATCTCGGTA
AAAATCAAACATACATCAGCGATATCGAAATCGGGAACTTTTTTTGTATT
TTAAAATGTTGAAGTGTTTTCTAAGTATTTTCTACAATCGCATTAACACA
GATACATACCACACAAACATTTTGGGAAACCAGGTCATAATACAGGGTTT
CTGAATAAAGAAAATGTCACTCAGCGATTGAACAATCTGGTTAATAACGC
ACTTTCATCAAATACAAAGAATGATTAAGTGAAAGTTGCCAGTTTCTAAT
AATTCTTGCTTGTTATTGACTTGATTGTCGAAACACGCTAAATAGGTACA
ATTTTAGGGTTTTTTGTATAGTTTATCATTTTCTGTCTTACCATCTTGCT
AATCTCCGAAGAGATTCTGATTACTCCGTGCAAACACGCATGTACTCTAA
AGTTCATGACTCCGTATAAGAGTATCTACCCAAGAGCGAGCCCTTTTATC
TTTTTTTATTTTTGGAATCAGTAGTAAATGAGCTTTTAAGCGTGGTGATT
GGCTAACCAGAACAAACGTCAATCATATACACAATCATATACACAATCAT
ATCAAGAACCCAGTTGTTTTCGTTTTAAAATAAAGGGTAACGCAGTTTGG
AATGTTTTGGCTGAATAACCAGC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_039528XLOC_039528Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00063109-exon-scaffold_38-1575043694:290195..290594TCONS_00063109-exon-scaffold_38-1575043694:290195..290594Clytia hemisphaericaexon
TCONS_00063109-exon-scaffold_38-1575043694:281279..281420TCONS_00063109-exon-scaffold_38-1575043694:281279..281420Clytia hemisphaericaexon
TCONS_00063109-exon-scaffold_38-1575043694:280577..280651TCONS_00063109-exon-scaffold_38-1575043694:280577..280651Clytia hemisphaericaexon
TCONS_00063109-exon-scaffold_38-1575043694:280047..280121TCONS_00063109-exon-scaffold_38-1575043694:280047..280121Clytia hemisphaericaexon
TCONS_00063109-exon-scaffold_38-1575043694:275822..279040TCONS_00063109-exon-scaffold_38-1575043694:275822..279040Clytia hemisphaericaexon
TCONS_00063109-exon-scaffold_38-1510915933:290195..290594TCONS_00063109-exon-scaffold_38-1510915933:290195..290594Clytia hemisphaericaexon
TCONS_00063109-exon-scaffold_38-1510915933:281279..281420TCONS_00063109-exon-scaffold_38-1510915933:281279..281420Clytia hemisphaericaexon
TCONS_00063109-exon-scaffold_38-1510915933:280577..280651TCONS_00063109-exon-scaffold_38-1510915933:280577..280651Clytia hemisphaericaexon
TCONS_00063109-exon-scaffold_38-1510915933:280047..280121TCONS_00063109-exon-scaffold_38-1510915933:280047..280121Clytia hemisphaericaexon
TCONS_00063109-exon-scaffold_38-1510915933:275822..279040TCONS_00063109-exon-scaffold_38-1510915933:275822..279040Clytia hemisphaericaexon
TCONS_00063109-exon-scaffold_38-1491911889:290195..290594TCONS_00063109-exon-scaffold_38-1491911889:290195..290594Clytia hemisphaericaexon
TCONS_00063109-exon-scaffold_38-1491911889:281279..281420TCONS_00063109-exon-scaffold_38-1491911889:281279..281420Clytia hemisphaericaexon
TCONS_00063109-exon-scaffold_38-1491911889:280577..280651TCONS_00063109-exon-scaffold_38-1491911889:280577..280651Clytia hemisphaericaexon
TCONS_00063109-exon-scaffold_38-1491911889:280047..280121TCONS_00063109-exon-scaffold_38-1491911889:280047..280121Clytia hemisphaericaexon
TCONS_00063109-exon-scaffold_38-1491911889:275822..279040TCONS_00063109-exon-scaffold_38-1491911889:275822..279040Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_38supercontigscaffold_38:275822..290594 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.174516	0	7.59936e-07	0.502484	0.391763	1.21272e-07	1.50685	2.33598	1.46338	1.12993	1.69155	0.845328	2.61019	1.84458	4.17399	3.48337	1.47881	1.14493	4.18418	3.60414	1.4247	1.7515	0.800095	1.71468	1.28216	1.15993	3.56718	2.72896	7.57864	5.15814
Blast
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BLAST of TCONS_00063109 vs. Swiss-Prot (Human)
Match: TRAF4 (TNF receptor-associated factor 4 OS=Homo sapiens GN=TRAF4 PE=1 SV=1)

HSP 1 Score: 108.227 bits (269), Expect = 2.151e-24
Identity = 60/151 (39.74%), Postives = 81/151 (53.64%), Query Frame = 3 
Query:  255 GFDVKFAEKLDRDNIECTICFMVLREPLQGSKCGHRYCKKCIEEFHEKNPKKCPQDWQENEW---FKDLGKEREILDLKIRCKNHRDGCTWQNELRDQEEHLKTCDYETIQCNLRCGEPVLRINLQNHLDKDCPLIST-CEYSDFGCLFKG 695
            GFD KF EK  R  + C +C   +REP+Q S CGHR+C  C++EF  +   KCP+D    ++   + D   E ++L L IRC +  +GC W   LR  + HL TC +  I C  RC   + R +L  HL  DCP     CE+   GC F G
Sbjct:    3 GFDYKFLEKPKR-RLLCPLCGKPMREPVQVSTCGHRFCDTCLQEFLSEGVFKCPEDQLPLDYAKIYPDPELEVQVLGLPIRCIHSEEGCRWSGPLRHLQGHLNTCSFNVIPCPNRCPMKLSRRDLPAHLQHDCPKRRLKCEFC--GCDFSG 150
The following BLAST results are available for this feature:
BLAST of TCONS_00063109 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
TRAF42.151e-2439.74TNF receptor-associated factor 4 OS=Homo sapiens G... [more]
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