|
|
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00063110 ID=TCONS_00063110|Name=TCONS_00063110|organism=Clytia hemisphaerica|type=transcript|length=643bp
CAATCACCATTTGATCCAAGCGCTAGAGAAGTCGAGGTATTAAACATTTC
ATCAAACAAAATGAAGACGGCTACCATTTTGGCAGGTGTTGTTGTTTGTT
TACTGGTAACCATGGCAAACACAAGAGCTTCTCCTCGAACCTGGTTATAC
GAGTTGCTTGAAAACGGAGACAGCACAATGAGCAAACGTCAAGTATGGAA
CTGTTTGAAAGATTGTGGCAATGATGTGAGTTGTGATATCATGGAAAAGT
TTTGTGGATTCTCAATCAACGCTCATCATTACTCGAATGCAATTACAAAC
AAAAAGCGCGGGCTGTACAAGAAATCTTCGCCACTGATGAATTGTGGGTG
TGACTTTAACGATGagaattatttcttttgttACGAAAATTGTAAGAACA
GATTCTTATCTAATTtaaacaaagttaaaaaaataaattgtatATGTTTT
GAATACCTGTGGGTACCACTATTGCCTTGAGTTTGcaaaaaagctttgaa
atatTCATATGTACTAGACTTGTATTTGTTTTTTCTCAAGATCCTATTTT
GGACTGGCAAAAGAATGTAAAGACGAACAATGACTAATGGTACACATTGC
TGTATCATAGACCTTAGTACCCCGGTGTTAAAAACTATAGTGT Run BLAST on NCBI protein sequence of TCONS_00063110-protein >TCONS_00063110-protein ID=TCONS_00063110-protein|Name=TCONS_00063110-protein|organism=Clytia hemisphaerica|type=polypeptide|length=159bp
QSPFDPSAREVEVLNISSNKMKTATILAGVVVCLLVTMANTRASPRTWLY
ELLENGDSTMSKRQVWNCLKDCGNDVSCDIMEKFCGFSINAHHYSNAITN
KKRGLYKKSSPLMNCGCDFNDENYFFCYENCKNRFLSNLNKVKKINCICF
EYLWVPLLP Run BLAST on NCBI transcript from alignment at scaffold_38:295664..298803- Legend: exonCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00063110 ID=TCONS_00063110|Name=TCONS_00063110|organism=Clytia hemisphaerica|type=transcript|length=3140bp|location=Sequence derived from alignment at scaffold_38:295664..298803- (Clytia hemisphaerica)
CAATCACCATTTGATCCAAGCGCTAGAGAAGTCGAGGTATTAAACATTTC
ATCAAACAAAATGAAGACGGCTACCATTTTGGCAGGTGTTGTTGTTTGTT
TACTGGTAACCATGGCAAACACAAGAGCTTCTCCTCGAACCTGGTTATAC
GAGGTAATATTTTGGCAATTTTATTGTTAAGGGTATGAAAAGAGAATTAG
GGATTGAAAAATTACATGAAAAATCTTATATTTGAAATTCCCCACACAAC
TGATAGAGAGGGAGGTCGTCAGTAGTCCGACACTTTCTAGTCCGACAGTA
AAAATGTCCGACGTTGGCTTTGACGAATGCGTAAGTATTCCGACAACAGT
TTTGTCCGACAACGAGTCAAAAAAAAACATAAATCGCTGAAGAGGAGACA
CGTCTTTTATAAGCAATCACCTTCCGACTTTGAGGTTGGGCCCCTAAACC
CGACTTTTCTTAAATTTTGGGAAGCTTATTAGGATTATGCTTTCAAGAGT
CAAGAAATTGGATTTAGCTGTTAAAGTTTGCAATTTACAACCCTTATAGC
ATAATTCTGAACATGCAAAAAGGAACCCTTAAAGGCAGTGCATTCTTTTT
GCAATAAATTATCTTTGCGCAAATTTGATTGGTCCTTTATTTCTAATTAT
GTCAAAATGCCGCTTTAATGAACTTTTATTAATATTATCTCAGTGAAAAA
CCCTTATTCAACATTCGACACTCTAAAATCTTTCGTTTTCGGACAAAAGT
GATATCGGAAAAAAAGACTTCTAAATTGTAAATTTATTTTATAGATTCGG
ACTATTTTACTGTCGGACTAGAAAGTGTCGGACTAGTGACATGCACCCGA
TAGAGAACATCAAAATAATGTTTTATTTCACGTCCATAACGTTGACTGAA
CCTTTTAGATGAACACCTTGAGAGAGAGAATGGCGCTAAATTCTTTTCAT
CAAAATCAAAACCTAACACTCTCTCTCTTGCTTGTTACTAGCTTCACCTT
TATGGAATTTCAAATAATAGGAAACTTATCTGGCGTGGGGGCGTTTCCTG
GGAATCCGGCAAAAAAATAGAACAAGTTACCCAGGCCAAGGGTTCTTTTC
CAGGCCAAAAGTTTCCCTGTTGACATCGATGAATAATTTATAGCTGGATA
TTCACGCTTACTATGCATCTATATATTAATAGTGGTAGTCTGTATGTGTG
TTTGTCTGTGTTTTCTACTTTCGTTTTCTAACGCAATGTTTTTGTTCTTC
CAAAAGATGACTTCCAGTTCTTGCTCCACAAATGTGTTAAATCAGATTCG
CGCCGTTTTATAGTTGTTCGATAAGTTTGTTTTGATTGATAGATTAGACT
TTTTCTTTTTTTTTTCTTTCTTTTCTTTTGTTTTATGTTTTCGAATGTAA
TTAACGACCTTATTTGATTTGAGACATTCGATTCAAATTCTTTTCAAAAC
AAAAGAAATCTTTTAAACAGAATCTGTTGAAGAAAAGAACAAATATGAAA
TAAAACACAAGAATCACATAACAAGTTTCTGAAGTTTGTTAGAAACTTAG
AACAACAGCAACATTAAAAATACATTCAAAAAGCGGTAAAAACTAGAATT
CTTTCTTCGTAAAAAGGGACCTTTAAACATGTATGTCGATAATTATTTTG
CTGTAAATCTAAGTCATTGTTGAATCTGAAAAATTATTGAAGTTATGACG
AAGTTATTTTATAAAAAGCAACATAAAATTGCGCTATCTATCACGCTTTT
TTGCCTGCGTGTCCTAGCTGCCTTCCGGGGGGACTATGGTTGCGAGCTGA
CTTTCGGCCCTGCCCCTTGGACCCTTGGCAGAATGAAGAGGAGAAGAAAC
AAGGGAAATTGTGTGAATTTTAATTCACTTTTTGGAACTAATTTGACCAA
ATTTCTATCTGAAGTTTGATTTCCCGATTTTTTAAACTGCCATGTTTCAA
AAAAGGCACCCTTAAGGCCGGCACATATCCATACCCATACCCTTCTCTTG
CCTAAGTACCCCCCCCCCGGGCTGCCTTTTTTTCGACGAATCGCGTGTCA
TGTCTATTATTTCACTCCGCTTGACATCAAAGTTTTCCTAAACATCAAGA
ACTACGGCAAATATAACGCGAGCGAAGCGAGAAAAAAATCTAATTGCAGA
GCCGTCTCGGACGTCGCTGGTCGCCGGTATGGTGTAAGTTGGGAATGACG
CCCTTTCTGTTTTCTGATCATTTTTGCCACAAAAATCTTTTTCAAAATAT
GGGTACTTAAAAGATACGTCACCCGGGAGGGATAGAGTCGAACTTTGAAG
AGAATTCTTCCCTTTAATTTTGATTTCATCGTGTTTAAGCCACCTTCCCA
ACATCTCAAAGGACTTTAAATGCGTTCAGCAAAACAGCTAAACCGGCGTG
CGACGCCGGGTACCGGCTAGTTTCTGTATATTTCTATACGGGCCATGTTT
CTTCATTGTCGGATATTGGTACAAAGTCGATATTTTACATGATCGTCTTG
AATATAATAAGTTTTAATTAAATAATTTTCACGGCAATCTCCTAGGTACA
CAGTTTTTATAAGAATTCTTTTAATAAGAATCACAAGGCTCTAATTTGTA
GCTGGATACTGTATATCCATGCTAACCTTTTTTTAACTTTCAAATTATAG
TTGCTTGAAAACGGAGACAGCACAATGAGCAAACGTCAAGTATGGAACTG
TTTGAAAGATTGTGGCAATGATGTGAGTTGTGATATCATGGAAAAGTTTT
GTGGATTCTCAATCAACGCTCATCATTACTCGAATGCAATTACAAACAAA
AAGCGCGGGCTGTACAAGAAATCTTCGCCACTGATGAATTGTGGGTGTGA
CTTTAACGATGAGAATTATTTCTTTTGTTACGAAAATTGTAAGAACAGAT
TCTTATCTAATTTAAACAAAGTTAAAAAAATAAATTGTATATGTTTTGAA
TACCTGTGGGTACCACTATTGCCTTGAGTTTGCAAAAAAGCTTTGAAATA
TTCATATGTACTAGACTTGTATTTGTTTTTTCTCAAGATCCTATTTTGGA
CTGGCAAAAGAATGTAAAGACGAACAATGACTAATGGTACACATTGCTGT
ATCATAGACCTTAGTACCCCGGTGTTAAAAACTATAGTGT Coding sequence (CDS) from alignment at scaffold_38:295664..298803- >TCONS_00063110 ID=TCONS_00063110|Name=TCONS_00063110|organism=Clytia hemisphaerica|type=CDS|length=960bp|location=Sequence derived from alignment at scaffold_38:295664..298803- (Clytia hemisphaerica)
TTGCTTGAAAACGGAGACAGCACAATGAGCAAACGTCAAGTATGGAACTG
TTTGAAAGATTGTGGCAATGATGTGAGTTGTGATATCATGGAAAAGTTTT
GTGGATTCTCAATCAACGCTCATCATTACTCGAATGCAATTACAAACAAA
AAGCGCGGGCTGTACAAGAAATCTTCGCCACTGATGAATTGTGGGTGTGA
CTTTAACGATGAGAATTATTTCTTTTGTTACGAAAATTGTAAGAACAGAT
TCTTATCTAATTTAAACAAAGTTAAAAAAATAAATTGTATATGTTTTGAA
TACCTGTGGGTACCACTATTGCCTTGACAATCACCATTTGATCCAAGCGC
TAGAGAAGTCGAGGTATTAAACATTTCATCAAACAAAATGAAGACGGCTA
CCATTTTGGCAGGTGTTGTTGTTTGTTTACTGGTAACCATGGCAAACACA
AGAGCTTCTCCTCGAACCTGGTTATACGAGTTGCTTGAAAACGGAGACAG
CACAATGAGCAAACGTCAAGTATGGAACTGTTTGAAAGATTGTGGCAATG
ATGTGAGTTGTGATATCATGGAAAAGTTTTGTGGATTCTCAATCAACGCT
CATCATTACTCGAATGCAATTACAAACAAAAAGCGCGGGCTGTACAAGAA
ATCTTCGCCACTGATGAATTGTGGGTGTGACTTTAACGATGAGAATTATT
TCTTTTGTTACGAAAATTGTAAGAACAGATTCTTATCTAATTTAAACAAA
GTTAAAAAAATAAATTGTATATGTTTTGAATACCTGTGGGTACCACTATT
GCCTTGACAATCACCATTTGATCCAAGCGCTAGAGAAGTCGAGGTATTAA
ACATTTCATCAAACAAAATGAAGACGGCTACCATTTTGGCAGGTGTTGTT
GTTTGTTTACTGGTAACCATGGCAAACACAAGAGCTTCTCCTCGAACCTG
GTTATACGAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00063110-exon-scaffold_38-1575043694:298651..298803 | TCONS_00063110-exon-scaffold_38-1575043694:298651..298803 | Clytia hemisphaerica | exon |
| TCONS_00063110-exon-scaffold_38-1575043694:295664..296153 | TCONS_00063110-exon-scaffold_38-1575043694:295664..296153 | Clytia hemisphaerica | exon |
| TCONS_00063110-exon-scaffold_38-1510915933:298651..298803 | TCONS_00063110-exon-scaffold_38-1510915933:298651..298803 | Clytia hemisphaerica | exon |
| TCONS_00063110-exon-scaffold_38-1510915933:295664..296153 | TCONS_00063110-exon-scaffold_38-1510915933:295664..296153 | Clytia hemisphaerica | exon |
| TCONS_00063110-exon-scaffold_38-1491911889:298651..298803 | TCONS_00063110-exon-scaffold_38-1491911889:298651..298803 | Clytia hemisphaerica | exon |
| TCONS_00063110-exon-scaffold_38-1491911889:295664..296153 | TCONS_00063110-exon-scaffold_38-1491911889:295664..296153 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_38 | supercontig | scaffold_38:295664..298803 - |
Blast
The following BLAST results are available for this feature:
|
