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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00063113 ID=TCONS_00063113|Name=TCONS_00063113|organism=Clytia hemisphaerica|type=transcript|length=970bp
CTGTTCAAATTTTACTTTTGACAAACTTTTCGTGAAAATGTCAGCAACCA
TGTCGTTAGTTGGACAATACTTCACTTGAACAACTTTCTCATCAACAGCT
TGTCTGACATAATGATATTTTATGTCAATATTCTTCGTTCTGGAATTAAG
TTTCGGATTCTCGCTAAGTCCGATAGCACCTTGGTTATCCTCATATAACG
TTGTTggttttgtttgtttaaaaccaATATCACTTAACAATTGACGTAGC
CATACGGCTTCTTGCGTAGAATGACTGAGGGAAATGTACTCAGCCTCGGT
TGTTGACAGGGCAACAACGGATTGACGTTGAGATCTCCACGTTACAGGAG
ATGTACCGATTTGAAAAACATATCCAGATGTCGACTTTCTGGATGACTTA
TCACCAGCCCAATCAGCATCGGCGTAGGCTGATAATTCAACATTTCTCGA
TTTTGACGAAACATAGACTAAACAATGATCCAAAGTTCCTTGGATGTAAC
GAAATACGCGTTTAACACCTTTCCAGTGTTCTTCACTTGGATGGGACATG
TATTGACTCAATACTCCCACTGAATAAGACAGATCTGGACGAGTTCCGAT
CGACGCATAGATCAAGGAACCGATAGCAGCTTGATAATTTTTCAGGTTGA
CAGGTTTCTCATCAGGAGCAAGTTTTTCGAAAGACTTTCCTGTCTCCATT
GGTGTTGAGATTGGTCGGCATTCGGCCATGCCGAATCGTTGCAGAACATT
GCGAAGATAAGCAGATTGATCAATTCGAATGATCCCAGCTTGTCGATCTC
TACGAACTCTCATACCAAGGATGTAATTGATCTCTCTCTGATCGACCATA
TCAAACTTCTCAGCTAGATTCTTCTTCTCCCGTTCGAGCAAATTGATATC
GTTTGATGCGAGGGTAAAATCATCGACGTAAACAGCAATAATGATCAAAG
AAGTTGTGTCGTTCTCCTTG Run BLAST on NCBI protein sequence of TCONS_00063113-protein >TCONS_00063113-protein ID=TCONS_00063113-protein|Name=TCONS_00063113-protein|organism=Clytia hemisphaerica|type=polypeptide|length=323bp
KENDTTSLIIIAVYVDDFTLASNDINLLEREKKNLAEKFDMVDQREINYI
LGMRVRRDRQAGIIRIDQSAYLRNVLQRFGMAECRPISTPMETGKSFEKL
APDEKPVNLKNYQAAIGSLIYASIGTRPDLSYSVGVLSQYMSHPSEEHWK
GVKRVFRYIQGTLDHCLVYVSSKSRNVELSAYADADWAGDKSSRKSTSGY
VFQIGTSPVTWRSQRQSVVALSTTEAEYISLSHSTQEAVWLRQLLSDIGF
KQTKPTTLYEDNQGAIGLSENPKLNSRTKNIDIKYHYVRQAVDEKVVQVK
YCPTNDMVADIFTKSLSKVKFEQ Run BLAST on NCBI transcript from alignment at scaffold_38:77127..78096 Legend: exonfive_prime_UTRCDS Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00063113 ID=TCONS_00063113|Name=TCONS_00063113|organism=Clytia hemisphaerica|type=transcript|length=970bp|location=Sequence derived from alignment at scaffold_38:77127..78096 (Clytia hemisphaerica)
CAAGGAGAACGACACAACTTCTTTGATCATTATTGCTGTTTACGTCGATG
ATTTTACCCTCGCATCAAACGATATCAATTTGCTCGAACGGGAGAAGAAG
AATCTAGCTGAGAAGTTTGATATGGTCGATCAGAGAGAGATCAATTACAT
CCTTGGTATGAGAGTTCGTAGAGATCGACAAGCTGGGATCATTCGAATTG
ATCAATCTGCTTATCTTCGCAATGTTCTGCAACGATTCGGCATGGCCGAA
TGCCGACCAATCTCAACACCAATGGAGACAGGAAAGTCTTTCGAAAAACT
TGCTCCTGATGAGAAACCTGTCAACCTGAAAAATTATCAAGCTGCTATCG
GTTCCTTGATCTATGCGTCGATCGGAACTCGTCCAGATCTGTCTTATTCA
GTGGGAGTATTGAGTCAATACATGTCCCATCCAAGTGAAGAACACTGGAA
AGGTGTTAAACGCGTATTTCGTTACATCCAAGGAACTTTGGATCATTGTT
TAGTCTATGTTTCGTCAAAATCGAGAAATGTTGAATTATCAGCCTACGCC
GATGCTGATTGGGCTGGTGATAAGTCATCCAGAAAGTCGACATCTGGATA
TGTTTTTCAAATCGGTACATCTCCTGTAACGTGGAGATCTCAACGTCAAT
CCGTTGTTGCCCTGTCAACAACCGAGGCTGAGTACATTTCCCTCAGTCAT
TCTACGCAAGAAGCCGTATGGCTACGTCAATTGTTAAGTGATATtggttt
taaacaaacaaaaccAACAACGTTATATGAGGATAACCAAGGTGCTATCG
GACTTAGCGAGAATCCGAAACTTAATTCCAGAACGAAGAATATTGACATA
AAATATCATTATGTCAGACAAGCTGTTGATGAGAAAGTTGTTCAAGTGAA
GTATTGTCCAACTAACGACATGGTTGCTGACATTTTCACGAAAAGTTTGT
CAAAAGTAAAATTTGAACAG Coding sequence (CDS) from alignment at scaffold_38:77127..78096 >TCONS_00063113 ID=TCONS_00063113|Name=TCONS_00063113|organism=Clytia hemisphaerica|type=CDS|length=969bp|location=Sequence derived from alignment at scaffold_38:77127..78096 (Clytia hemisphaerica)
AAGGAGAACGACACAACTTCTTTGATCATTATTGCTGTTTACGTCGATGA
TTTTACCCTCGCATCAAACGATATCAATTTGCTCGAACGGGAGAAGAAGA
ATCTAGCTGAGAAGTTTGATATGGTCGATCAGAGAGAGATCAATTACATC
CTTGGTATGAGAGTTCGTAGAGATCGACAAGCTGGGATCATTCGAATTGA
TCAATCTGCTTATCTTCGCAATGTTCTGCAACGATTCGGCATGGCCGAAT
GCCGACCAATCTCAACACCAATGGAGACAGGAAAGTCTTTCGAAAAACTT
GCTCCTGATGAGAAACCTGTCAACCTGAAAAATTATCAAGCTGCTATCGG
TTCCTTGATCTATGCGTCGATCGGAACTCGTCCAGATCTGTCTTATTCAG
TGGGAGTATTGAGTCAATACATGTCCCATCCAAGTGAAGAACACTGGAAA
GGTGTTAAACGCGTATTTCGTTACATCCAAGGAACTTTGGATCATTGTTT
AGTCTATGTTTCGTCAAAATCGAGAAATGTTGAATTATCAGCCTACGCCG
ATGCTGATTGGGCTGGTGATAAGTCATCCAGAAAGTCGACATCTGGATAT
GTTTTTCAAATCGGTACATCTCCTGTAACGTGGAGATCTCAACGTCAATC
CGTTGTTGCCCTGTCAACAACCGAGGCTGAGTACATTTCCCTCAGTCATT
CTACGCAAGAAGCCGTATGGCTACGTCAATTGTTAAGTGATATtggtttt
aaacaaacaaaaccAACAACGTTATATGAGGATAACCAAGGTGCTATCGG
ACTTAGCGAGAATCCGAAACTTAATTCCAGAACGAAGAATATTGACATAA
AATATCATTATGTCAGACAAGCTGTTGATGAGAAAGTTGTTCAAGTGAAG
TATTGTCCAACTAACGACATGGTTGCTGACATTTTCACGAAAAGTTTGTC
AAAAGTAAAATTTGAACAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00063113-exon-scaffold_38-1491911889:77127..78096 | TCONS_00063113-exon-scaffold_38-1491911889:77127..78096 | Clytia hemisphaerica | exon |
| TCONS_00063113-exon-scaffold_38-1510915933:77127..78096 | TCONS_00063113-exon-scaffold_38-1510915933:77127..78096 | Clytia hemisphaerica | exon |
| TCONS_00063113-exon-scaffold_38-1575043694:77127..78096 | TCONS_00063113-exon-scaffold_38-1575043694:77127..78096 | Clytia hemisphaerica | exon |
The following polypeptide feature(s) derives from this transcript:
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_38 | supercontig | scaffold_38:77127..78096 . |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
| Term | Definition |
|---|
| IPR013103 | RVT_2 |
Blast
The following BLAST results are available for this feature:
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