TCONS_00063128 (transcript) - C. hemisphaerica

Overview
NameTCONS_00063128
Unique NameTCONS_00063128
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length449

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00063128 ID=TCONS_00063128|Name=TCONS_00063128|organism=Clytia hemisphaerica|type=transcript|length=449bp
CACAATCACACAACCTCTTACAGTGTTGTCTGAGAGGATGTCGAAATCCA
AATCTTTTGCTTAAAGCAAAAGCCTACAAGACTTACATAAACCAAATCCT
CAACTATGCATCTACAGTCTTGACCCCTATCGGAGAGAGCAATCAAGAAC
TTCCAGACCGAAttgaaatgatacaaaaaaaCCTGCTTGTTTTGTTTATG
CTGACTGGAATCATCCTTCCAGCTTAAGGAAAATGATTGACTAACTAGAA
TGAAAAACCCTAGAAACTCAAAGGAAAACTTGCAACCTTACAATGATGCA
CAAGATCATTCACAAAGCAGTGGCAATTCCCGAGTCTATATTTTCAAACA
GGACTAGGTTGCCTAATTGCATTTGTTTTCAACAAATGACAAATCTACAG
GGTGCCCTACGAGGTGACACATAACTACCTTTaaacctgtttttttttt
Run BLAST on NCBI

transcript from alignment at scaffold_380:1798..2246

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00063128 ID=TCONS_00063128|Name=TCONS_00063128|organism=Clytia hemisphaerica|type=transcript|length=449bp|location=Sequence derived from alignment at scaffold_380:1798..2246 (Clytia hemisphaerica)
aaaaaaaaaacaggtttAAAGGTAGTTATGTGTCACCTCGTAGGGCACCC
TGTAGATTTGTCATTTGTTGAAAACAAATGCAATTAGGCAACCTAGTCCT
GTTTGAAAATATAGACTCGGGAATTGCCACTGCTTTGTGAATGATCTTGT
GCATCATTGTAAGGTTGCAAGTTTTCCTTTGAGTTTCTAGGGTTTTTCAT
TCTAGTTAGTCAATCATTTTCCTTAAGCTGGAAGGATGATTCCAGTCAGC
ATAAACAAAACAAGCAGGtttttttgtatcatttcaaTTCGGTCTGGAAG
TTCTTGATTGCTCTCTCCGATAGGGGTCAAGACTGTAGATGCATAGTTGA
GGATTTGGTTTATGTAAGTCTTGTAGGCTTTTGCTTTAAGCAAAAGATTT
GGATTTCGACATCCTCTCAGACAACACTGTAAGAGGTTGTGTGATTGTG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_039545XLOC_039545Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00063128-exon-scaffold_380-1491911889:1798..2246TCONS_00063128-exon-scaffold_380-1491911889:1798..2246Clytia hemisphaericaexon
TCONS_00063128-exon-scaffold_380-1510915933:1798..2246TCONS_00063128-exon-scaffold_380-1510915933:1798..2246Clytia hemisphaericaexon
TCONS_00063128-exon-scaffold_380-1575043694:1798..2246TCONS_00063128-exon-scaffold_380-1575043694:1798..2246Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_380supercontigscaffold_380:1798..2246 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.591296	0.144152	1.17162	1.63749	0	0	0	0	0	0	0	0	0	0	0	0.0900797	0	0	0	0	0	0	0.169492	0	0	0	0	0	0.164073	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00063128 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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