TCONS_00063151 (transcript) - C. hemisphaerica

Overview
NameTCONS_00063151
Unique NameTCONS_00063151
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1235

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00063151 ID=TCONS_00063151|Name=TCONS_00063151|organism=Clytia hemisphaerica|type=transcript|length=1235bp
GTAAGAGTTGAAGTACGAGCATTAGATCATTTTGTTTGTCAGAGAATTTG
TTCTTCTATGTAGATATTATGTTCTTGTCAAAATTACAGAAAGTCTTGGA
CTTTTCCTTGACTCCACAAGTTTGTTGTGGAGACTATGATTGTGTGTGGT
GGTGGGTTGGTATCGAAATCTCTATTTTGAATAGAAAAAACAGAAAACTA
TTTTCGCACTGTATTAAAGTCGAACTTATCCTACAGGTTTTTAAACTTaa
aagCATAAAACATATATACATAGCAACATGTCAACAAAGAAATCAATATC
TTTTAAAGAATTCCAAAGATCTTCAATGAATGCAATTTCAAGAAATAAAG
TCCACCCAAAAAGCCCGTATGACCCTGTCACGTTACAAACTTACGAATCC
CCGATAGCAAAGCAAGCAACATCCTCACCTTCCACTCCCAATCGCAATCC
AgccaaaagaagaaagaaggtTTTTGACAAAAAGTCTTTCCTTGCATCAG
ACTCTGATAATGACGATGTTGATGAAGTTTTTAATGATGAAGAAAGAAGA
ACAGGAATAATGGAAAGAAGTATCAACAATAGCAATATCAGAAATACAAC
AGACGATAGAATAAGGAATTCTTCAATGTCCCCGTTTGCACAGTCAACGC
CAACAAATTCCActcaaaattcaaccaaaaatgagACTTGTACGTAAATG
TTTTAAAGACTCAATGGATGAAGGTGATTTTGAGGAATGGAATCTGGATG
ATCGTAAAGGAGCTTTTTCTAATCATAACAAGCTGTTGTCACAGCACATT
GTGGATAGTGTCAAAGGCCTTCATCCAGATTTGGAAAATGATGAAATCGA
AAATGCTGTGCGAATCAATTTCCGCTCCAAAAAGGACACCAAGAGGAAAA
CTGAGAGGAACCCAAATTATTTAGCAGATTGTGCCAGTACCTCAAGAAAA
GAAACGAAACTTAATAGACGCTTGATGACCCTCAAGAAATTTGACGTGGA
TCAGCCAACGAAAACGGCCATCCAAACAGTCTTGTGTCCAGCAATGATGT
CATCTGAAGACGAAGACATACAAGATGGTGAAAAATCCTTCATAGTGAGA
AGGCCTTCATGGAGGGCGGAAGGGGTGgctggtgtttttgaaaaactggA
TCAGTTACACAAAGACAGTCAGTCAAAACATTCACGNGATATCCGATATT
CCGCGTTTACTTCTTTCCAAATACCGTAAATGTCA
Run BLAST on NCBI

transcript from alignment at scaffold_383:2498..7852+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00063151 ID=TCONS_00063151|Name=TCONS_00063151|organism=Clytia hemisphaerica|type=transcript|length=5355bp|location=Sequence derived from alignment at scaffold_383:2498..7852+ (Clytia hemisphaerica)
GTAAGAGTTGAAGTACGAGCATTAGATCATTTTGTTTGTCAGAGAATTTG
TTCTTCTATGTAGATATTATGTTCTTGTCAAAATTACAGAAAGTCTTGGA
CTTTTCCTTGACTCCACAAGTTTGTTGTGGAGACTATGATTGTGTGTGGT
GGTGGGTTGGTATCGAAATCTCTATTTTGAATAGAAAAAACAGAAAACTA
TTTTCGCACTGTATTAAAGTCGAACTTATCCTACAGGTTTTTAAACTTaa
aaggtaaacaaacccaTTTTTGCTTTCTACACTACCTATATAGCTTAGGG
AAGAgtgtttttttgtatttttctgaaCTTCATCGAAAAGACCAGACATA
ATTAATCAATCCGTTTGATTACCAAACTAATCTAACTCAATCgaacgaca
aaagttttttcaaaagttgcCAAAATTGAGTATAAATTCGTTTGTGACAA
GTTTGACAACACGTATTAAGTTCTAAATATTAAGAAATATTAGACAAATT
CACAAAGCTCTGTTCCCTAGTTAGTTTTTAATCATCCAGCATTCTACTAA
AATGATTCCTACTCACAGTTTTTTAAAGTNTTTTAATCATCCAGCATTCT
ACTAAAATGATTCCTACTCAcagtttttcaaagttttttgtaTGTGTTTA
GAGTACTTGGTTGTTAACTGATTTTGCGGCTTTGCATGTAACAATTAAAC
GTGCCTCAGATCACAGGTTAGATGAAGATGATTCTTGCTGCGTAGCAAAC
CTATGGCCAGACTGCTAGAGTATATTTTTCTAACCATAAAATGATGTGAA
TACAATAGTTATTAGTGATCTATTGGCCCCATTGAAAATTGCTTTTTATC
ATGTGGATTTATTTAATTTTAGCATAAAACATATATACATAGCAACATGT
CAACAAAGAAATCAATATCTTTTAAAGAATTCCAAAGATCTTCAATGAAT
GCAATTTCAAGAAATAAAGTCCACCCAAAAAGCCCGTATGACCCTGTCAC
GTTACAAACTTACGAATCCCCGATAGCAAAGCAAGCAACATCCTCACCTT
CCACTCCCAATCGCAATCCAgccaaaagaagaaagaaggtTTTTGACAAA
AAGTCTTTCCTTGCATCAGACTCTGATAATGACGATGTTGATGAAGTTTT
TAATGATGAAGAAAGAAGAACAGGAATAATGGAAAGAAGTATCAACAATA
GCAATATCAGAAATACAACAGACGATAGAATAAGGAATTCTTCAATGTCC
CCGTTTGCACAGTCAACGCCAACAAATTCCActcaaaattcaaccaaaaa
tggtatgtttttattataagagaCTCGACACCGTGGAAAGGTTTTATATT
GCACTAGTATGCCATAGTTTTCACACTTTTAAACTCACATTTATTTCCTG
GTTTTACGATTCTTGAGAAAATTAgacagaattttcaaaaacctttaaat
attATTTCCTCCCTTCTAAAACTAGAAGACTGGGAGGAATTGTAATACCA
ATTTAGTATTTTggatgaaatgattttttttcagagatTGAGAACTTAAA
AGCTGTCATCTCAGAGAtggaaaagaaaattgatagacTTGAAACAAGAT
CAAAGGCCAAAGGAAAGAGCAAGCTTGTAGCATCTAATAAAACAAAGGTT
AGATAGTTGCAAGTAATAATTACATATCATTAAACAAAGGGATGCTTTTA
GTAATAAGgagccgtccatatagtacgtacgcaaagatttcccaaaaatt
tgatacccccatcccccttgtacgcaaagaacaatagaaatgatgtcatt
taaacattagatgtacgcttttgctaaactcccctctccccccatcactg
tgtacgtactatatggatggcccctaaGTATGAAATTGTATTTTCTCTGA
AAGAGTTGACAAgtattagaaaaataaatgacagtAAAAAATGTAGTAAC
TTGTCTCTTGAGtggaaaaaatttaaagttaatttttttttcttagttgT
TTTAGTTAGTCTTTCCTTGACTGTTCACATTCCTATTGAAATTTTGCATG
TAGAGTAATATGTTTAAAGATAACTTCCTGATTTTCCCTGAGTTGAATGT
TGTGGAAGTCCTACCTCAATAATTCAAGTTCCACCTTAACCTATTTCCCC
CAcctgaaaaccccaaaaaagCACGGTTCACCCTGGTTGTTTTTGGTTCA
GAAACCCAAACCCCCCTGCACATTATGATTTGTGCTACTGATGTTATAAC
CTGTACTTTGAAATgatttgtgttttctttttgtatttttagagACTTGT
ACGTAAATGTTTTAAAGACTCAATGGATGAAGGTGATTTTGAGGAATGGA
ATCTGGATGATCGTAAAGGGTaagaataattttcaaataaatttataaaa
tgCACTACCGTAAAtccatttaatttttcaggctcttcgagcggggcgct
tatttttttatttcagaaattcgtatatcaacaaattcggaatctgctta
aacttaactgtttcaaagagttgatttttcaaaaaaggNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNccaattg
acaatttctatcattttattcttaatcgctttctttctttttaagacaca
agtatctactcaatatcttattcaatcaataacaatattcgAATAAGCAC
CCCTCCCTtgaggggggcgcttattcgagcggggcgcttataaaattatt
ttaactaaaagggggcgcttattcaaggaTTTACGGTAATTAATTCACTA
TGATTTGATGATGAACAGTCCCAATGCAAATCCATCATTAAAAAGGATAA
TAAACCTGTCAAGGCAATTTTTGTTGTAAATCTCAACAggaaaagattat
ttttaagTACAATTTGCCCATCAAACCTTCACTGTTTTTAATTCCATGTC
TGTTTATTTTAGAGCTTTTTCTAATCATAACAAGCTGTTGTCACAGCACA
TTGTGGATAGTGTCAAAGGCCTTCATCCAGATTTGGAAAATGATGAAATC
GAAAGTATGTTTTTACATATCAAGTTTATTAATAGTACTCAGTAGCATCA
TATTTTAATCAGAAAAAATATAGCAAGAGAAATTTTAACTCTGATTATCG
Actcataaaaattttgattttgcgtggatttatttttgcgaattgctttt
tcaaaaaatttagggtggattaattttagcaatttgtCGATTTGACATGT
TTTACCAAATAAATTCTAGTAAAAACGGTACTAAACACATAAAATTTCTC
CTGTCCTAACTCTGCTTTTCGGCCACCACCATCACCACtttaataattca
aaaaatgttggctgctatatttaaaaaaaactgcttcTCCCCCAAATAGG
AAATTGATGTTTTCTTTGTCTTCTNAGGCtgctatatttaaaaaaaaact
gcttcTCCCCCCAATAGGAAATTGATGTTTTCTTAGTCTTCTGACCTATA
GCCTTAAAATGCACCTGAAATTACATGTGGTCAATATGTAATTAATATTC
ATTTTAGACACCAACAAAGTGAATGCTACAAATGTGAAATTATTCTATTT
AAAACTTAACAAAACTTTATTCTATTAGATGCTGTGCGAATCAATTTCCG
CTCCAAAAAGGACACCAAGAGGAAAACTGAGAGGAACCCAAATTATTTAG
CAGATTGTGCCAGTACCTCAAGAAAAGAAACGGTATGGATATTATTTATC
AGATAAGGATTCTTTCTGATTTGTCGAACTTGTAGACTAATTTATTGTGC
TTATAGCAAATGTTCATATCCCAAATACGTGAGGAGatctaattttggtg
ggaattaAATTTAGAGATTGTTGAATGTTTTTTAAACTTAGAATGGttat
aaattcaataaaatatcaaaacttctCCCAAGAATAtgcctttaaaatat
tttgtagaatttaattttgtgattgATGGCGTAGTAATCTCATGGGTTAA
ATTTGCCTGGAAATGCTTTTAGAGAAATGACAAAATATCTCCTCTATATT
TTTATCGTATTATGCTTNTACcttttgcttaaaaagaaaACACGTGCAAT
TCATAATTTGTCATATCTGTTATTTGTAAACGATAATTATTtagtattat
tttatttataaagttcACATTCACGCATTTATGTGTaattattttcaaca
aaattcataAACTATTTGATAACATTTATTCATAAATAGAaaacttttgc
aaaagaaacatgcattttgaattaattttatcCCGCATTTTAATACTACA
TTGTCATTCTAGAAATAATTACCCTAAgggaagaaaaagttttttcaagt
taaatttGATAGATAAATCTCACCGATGACATTGTTTGGAGTATCAACTA
CAGCAAATTAATCCCGAATCCGATGTATATATCTGAGTTATTTGAACGac
actgaaaatgaaatctaTTCTGAAAATCCGATATCCGATAATCCAAATTT
ATTCCTTTCCTAATANAAAATGACAAAATATCTCCTCTATATTTTTATCG
TATTATGCTTAGTATTTTCTCTTGTGTATCATTCAAAAACTtaatcaagc
aaaacaaaatttttcactAGTTTCATGACTTTAATAGGGATGATAAACCA
AAAGGGCATTTTAAGGCGGGCCTCAtgggtttttcgaaaatttggggggg
TAGCAAAAAAGGTGTCACCTCTCTTTTGCAGGGGGCTGATACCCTTGAGA
GCACTATGCCTTACACATGGCATgttaaggtttttttatttaGCAATTCA
ATGATGTCTTCCTTCCTTTTTTTTAGAAACTTAATAGACGCTTGATGACC
CTCAAGAAATTTGACGTGGATCAGCCAACGAAAACGGCCATCCAAACAGT
CTTGTGTCCAGCAATGATGTCATCTGAAGACGAAGACATACAAGATGGTG
AAAAATCCTTCATAGTGAGAAGGCCTTCATGGAGGGCGGAAGGGGTGgct
ggtgtttttgaaaaactggATCAGTTACACAAAGACAGTCAGTCAAAACA
TTCACGNGATATCCGATATTCCGCGTTTACTTCTTTCCAAATACCGTAAA
TGTCA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_039565XLOC_039565Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00063151-exon-scaffold_383-1491911889:2498..2750TCONS_00063151-exon-scaffold_383-1491911889:2498..2750Clytia hemisphaericaexon
TCONS_00063151-exon-scaffold_383-1510915933:2498..2750TCONS_00063151-exon-scaffold_383-1510915933:2498..2750Clytia hemisphaericaexon
TCONS_00063151-exon-scaffold_383-1575043694:2498..2750TCONS_00063151-exon-scaffold_383-1575043694:2498..2750Clytia hemisphaericaexon
TCONS_00063151-exon-scaffold_383-1491911889:3370..3799TCONS_00063151-exon-scaffold_383-1491911889:3370..3799Clytia hemisphaericaexon
TCONS_00063151-exon-scaffold_383-1510915933:3370..3799TCONS_00063151-exon-scaffold_383-1510915933:3370..3799Clytia hemisphaericaexon
TCONS_00063151-exon-scaffold_383-1575043694:3370..3799TCONS_00063151-exon-scaffold_383-1575043694:3370..3799Clytia hemisphaericaexon
TCONS_00063151-exon-scaffold_383-1491911889:4790..4866TCONS_00063151-exon-scaffold_383-1491911889:4790..4866Clytia hemisphaericaexon
TCONS_00063151-exon-scaffold_383-1510915933:4790..4866TCONS_00063151-exon-scaffold_383-1510915933:4790..4866Clytia hemisphaericaexon
TCONS_00063151-exon-scaffold_383-1575043694:4790..4866TCONS_00063151-exon-scaffold_383-1575043694:4790..4866Clytia hemisphaericaexon
TCONS_00063151-exon-scaffold_383-1491911889:5710..5801TCONS_00063151-exon-scaffold_383-1491911889:5710..5801Clytia hemisphaericaexon
TCONS_00063151-exon-scaffold_383-1510915933:5710..5801TCONS_00063151-exon-scaffold_383-1510915933:5710..5801Clytia hemisphaericaexon
TCONS_00063151-exon-scaffold_383-1575043694:5710..5801TCONS_00063151-exon-scaffold_383-1575043694:5710..5801Clytia hemisphaericaexon
TCONS_00063151-exon-scaffold_383-1491911889:6376..6479TCONS_00063151-exon-scaffold_383-1491911889:6376..6479Clytia hemisphaericaexon
TCONS_00063151-exon-scaffold_383-1510915933:6376..6479TCONS_00063151-exon-scaffold_383-1510915933:6376..6479Clytia hemisphaericaexon
TCONS_00063151-exon-scaffold_383-1575043694:6376..6479TCONS_00063151-exon-scaffold_383-1575043694:6376..6479Clytia hemisphaericaexon
TCONS_00063151-exon-scaffold_383-1491911889:7574..7852TCONS_00063151-exon-scaffold_383-1491911889:7574..7852Clytia hemisphaericaexon
TCONS_00063151-exon-scaffold_383-1510915933:7574..7852TCONS_00063151-exon-scaffold_383-1510915933:7574..7852Clytia hemisphaericaexon
TCONS_00063151-exon-scaffold_383-1575043694:7574..7852TCONS_00063151-exon-scaffold_383-1575043694:7574..7852Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_383supercontigscaffold_383:2498..7852 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
1.22936	0.778433	0.233894	0.160999	18.1141	15.5749	8.21068	5.49634	2.0723	2.5997	1.09372	2.53742	0.746859	0	0.673548	1.64388	4.50895	2.08705	1.38653	0.870542	0.963449	0	0.299104	0.651383	0	0.413793	0.600853	1.01204	0.289541	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00063151 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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