TCONS_00063171 (transcript) - C. hemisphaerica

Overview
NameTCONS_00063171
Unique NameTCONS_00063171
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length396

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00063171 ID=TCONS_00063171|Name=TCONS_00063171|organism=Clytia hemisphaerica|type=transcript|length=396bp
TGGTGGCGGATCTCTCTTAAGTTTCAGTATGCACAAGGTTGTGATAGATT
CTCCTGCCGTACCGGCTGTATGGACAGGAGTTTCTCAGCTGCAATGATGA
TACGGTCGGGAAACTGGCCATAGCGTTGTTTTAGGCTTTGTGTTTTCTAT
TTCATACAGCAAGAGATTTTGTCCCACACGAATTACACGCGATAGACAGT
TTTCAGTAGCTATTAGGCTGTGCACGGTGGTGAGGGGCCAGGCCTTGAGT
CTGGGCAACCCGGCTGGTTGCGAAAACCCGCCGATTCTGGGTTTAATCAT
CGTTTAGGAAGTCGGATCCGGTACACAGTCCGGCACTTACCCGGCTGGTG
GTGGACTTCCTGTCGGGTGCACATTGTTGCCTTATTTTTCTTTGTG
Run BLAST on NCBI

transcript from alignment at scaffold_383:125833..126228

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00063171 ID=TCONS_00063171|Name=TCONS_00063171|organism=Clytia hemisphaerica|type=transcript|length=396bp|location=Sequence derived from alignment at scaffold_383:125833..126228 (Clytia hemisphaerica)
CACAAAGAAAAATAAGGCAACAATGTGCACCCGACAGGAAGTCCACCACC
AGCCGGGTAAGTGCCGGACTGTGTACCGGATCCGACTTCCTAAACGATGA
TTAAACCCAGAATCGGCGGGTTTTCGCAACCAGCCGGGTTGCCCAGACTC
AAGGCCTGGCCCCTCACCACCGTGCACAGCCTAATAGCTACTGAAAACTG
TCTATCGCGTGTAATTCGTGTGGGACAAAATCTCTTGCTGTATGAAATAG
AAAACACAAAGCCTAAAACAACGCTATGGCCAGTTTCCCGACCGTATCAT
CATTGCAGCTGAGAAACTCCTGTCCATACAGCCGGTACGGCAGGAGAATC
TATCACAACCTTGTGCATACTGAAACTTAAGAGAGATCCGCCACCA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_039579XLOC_039579Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00063171-exon-scaffold_383-1491911889:125833..126228TCONS_00063171-exon-scaffold_383-1491911889:125833..126228Clytia hemisphaericaexon
TCONS_00063171-exon-scaffold_383-1510915933:125833..126228TCONS_00063171-exon-scaffold_383-1510915933:125833..126228Clytia hemisphaericaexon
TCONS_00063171-exon-scaffold_383-1575043694:125833..126228TCONS_00063171-exon-scaffold_383-1575043694:125833..126228Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_383supercontigscaffold_383:125833..126228 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.379441	1.20142	0.214811	1.39649	0.255849	0	0	0	0.538921	1.14749	1.15327	0.280962	0.943174	3.38452	1.21714	1.65362	2.8366	1.95725	1.15921	0.245978	6.23671	5.36832	0.870119	1.38436	0	1.03565	2.3413	0.277633	0.210575	0.214543
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00063171 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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