TCONS_00063179 (transcript) - C. hemisphaerica

Overview
NameTCONS_00063179
Unique NameTCONS_00063179
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length736

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00063179 ID=TCONS_00063179|Name=TCONS_00063179|organism=Clytia hemisphaerica|type=transcript|length=736bp
AGAACACCGCATCATGGCAGCAGCGCAAGATGCTTATGGAGTCACTGGTT
CTCAGTAAACTGACATCTGGCATCGCTTTACTATCCGATGCTACAAAAGC
CCAGATTGAGCGTCTTCAGAAAGTCCAGAACACCGCCGCTGGCTTCGTGC
TCAAATGTTATGCCAGAACCAGCGACGTAATCGATCTCGAATGGTTACCA
GTTTCTGAGATGGTTGATCTAACAATCGCCAAGATTTCCCATAGCGCTCT
CCACAACCCCAGCTGGCCGTCATACCTCAAACTTAATAGACAACCGGATC
CAGACAGAGAGCTCCGAAATGGTAATTTGGTCGCACATGACATTGAGGAC
ACATGTCGTCTAACTGGCACCTTTGCACATGAGGTCGCAAAATGCTTTAA
CAACTTGCCTGTTGCTATCAAACGAATTGACAAAAAGGAAAGCTTTGCTG
ATAAATGctggaatttttattttgatagggCGCTAGCCAAATCTCTAAGC
TAATTCAATTCAACCTCGAGTCACAAACTTAATCAACACAGTCGATCTAG
TATCTGATACTTACGTGTAGTCTTTAGTATTTGCAGCCTAGTCTATTTTC
TAAGgtcatttattttcaatcacTTGCTATATATTTGGACTCACTCTTCT
TGTGTTTTCTAGCCCACCAGCGATTCTAGCGTTCCCCTTTTGATACATTT
ATTTTatgttaatatttattttattttatctaaaac
Run BLAST on NCBI

protein sequence of TCONS_00063179-protein

>TCONS_00063179-protein ID=TCONS_00063179-protein|Name=TCONS_00063179-protein|organism=Clytia hemisphaerica|type=polypeptide|length=166bp
NTASWQQRKMLMESLVLSKLTSGIALLSDATKAQIERLQKVQNTAAGFVL
KCYARTSDVIDLEWLPVSEMVDLTIAKISHSALHNPSWPSYLKLNRQPDP
DRELRNGNLVAHDIEDTCRLTGTFAHEVAKCFNNLPVAIKRIDKKESFAD
KCWNFYFDRALAKSLS
Run BLAST on NCBI

transcript from alignment at scaffold_383:228588..229323

Legend: exonthree_prime_UTRCDSfive_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00063179 ID=TCONS_00063179|Name=TCONS_00063179|organism=Clytia hemisphaerica|type=transcript|length=736bp|location=Sequence derived from alignment at scaffold_383:228588..229323 (Clytia hemisphaerica)
gttttagataaaataaaataaatattaacatAAAATAAATGTATCAAAAG
GGGAACGCTAGAATCGCTGGTGGGCTAGAAAACACAAGAAGAGTGAGTCC
AAATATATAGCAAgtgattgaaaataaatgacCTTAGAAAATAGACTAGG
CTGCAAATACTAAAGACTACACGTAAGTATCAGATACTAGATCGACTGTG
TTGATTAAGTTTGTGACTCGAGGTTGAATTGAATTAGCTTAGAGATTTGG
CTAGCGccctatcaaaataaaaattccagCATTTATCAGCAAAGCTTTCC
TTTTTGTCAATTCGTTTGATAGCAACAGGCAAGTTGTTAAAGCATTTTGC
GACCTCATGTGCAAAGGTGCCAGTTAGACGACATGTGTCCTCAATGTCAT
GTGCGACCAAATTACCATTTCGGAGCTCTCTGTCTGGATCCGGTTGTCTA
TTAAGTTTGAGGTATGACGGCCAGCTGGGGTTGTGGAGAGCGCTATGGGA
AATCTTGGCGATTGTTAGATCAACCATCTCAGAAACTGGTAACCATTCGA
GATCGATTACGTCGCTGGTTCTGGCATAACATTTGAGCACGAAGCCAGCG
GCGGTGTTCTGGACTTTCTGAAGACGCTCAATCTGGGCTTTTGTAGCATC
GGATAGTAAAGCGATGCCAGATGTCAGTTTACTGAGAACCAGTGACTCCA
TAAGCATCTTGCGCTGCTGCCATGATGCGGTGTTCT

Coding sequence (CDS) from alignment at scaffold_383:228588..229323

>TCONS_00063179 ID=TCONS_00063179|Name=TCONS_00063179|organism=Clytia hemisphaerica|type=CDS|length=501bp|location=Sequence derived from alignment at scaffold_383:228588..229323 (Clytia hemisphaerica)
TTAGCTTAGAGATTTGGCTAGCGccctatcaaaataaaaattccagCATT
TATCAGCAAAGCTTTCCTTTTTGTCAATTCGTTTGATAGCAACAGGCAAG
TTGTTAAAGCATTTTGCGACCTCATGTGCAAAGGTGCCAGTTAGACGACA
TGTGTCCTCAATGTCATGTGCGACCAAATTACCATTTCGGAGCTCTCTGT
CTGGATCCGGTTGTCTATTAAGTTTGAGGTATGACGGCCAGCTGGGGTTG
TGGAGAGCGCTATGGGAAATCTTGGCGATTGTTAGATCAACCATCTCAGA
AACTGGTAACCATTCGAGATCGATTACGTCGCTGGTTCTGGCATAACATT
TGAGCACGAAGCCAGCGGCGGTGTTCTGGACTTTCTGAAGACGCTCAATC
TGGGCTTTTGTAGCATCGGATAGTAAAGCGATGCCAGATGTCAGTTTACT
GAGAACCAGTGACTCCATAAGCATCTTGCGCTGCTGCCATGATGCGGTGT
T
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_039587XLOC_039587Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00063179-proteinTCONS_00063179-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00063179-exon-scaffold_383-1491911889:228588..229323TCONS_00063179-exon-scaffold_383-1491911889:228588..229323Clytia hemisphaericaexon
TCONS_00063179-exon-scaffold_383-1510915933:228588..229323TCONS_00063179-exon-scaffold_383-1510915933:228588..229323Clytia hemisphaericaexon
TCONS_00063179-exon-scaffold_383-1575043694:228588..229323TCONS_00063179-exon-scaffold_383-1575043694:228588..229323Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_383supercontigscaffold_383:228588..229323 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.389095	0.527537	0.536631	1.8074	3.12743	3.26458	0.992764	2.40169	0.399789	1.24205	0.339885	0.879625	3.79958	3.51954	1.21623	1.01718	0.382704	1.87203	4.39515	4.19918	2.65364	1.7994	0.290644	0.886751	2.09643	2.42734	8.39259	9.39953	0.865586	0.969171
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00063179 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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