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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00063183 ID=TCONS_00063183|Name=TCONS_00063183|organism=Clytia hemisphaerica|type=transcript|length=1248bp
CTTATTTTTTTGAGGACACGTCACAGAAAAAcgtttatttgacgtcaaaa
attttttttgttaaaaagtaGATGTGATGTTGTTTGAGTAGCGCCACTCT
CGTTGTGAGAGTCTTTGCCCTTgattcttttttgctaaaaaaactgattt
ttttttagatAGAAATACACCTTGAAAACGGCCCTGGCCGAAACATGTTG
AAGATTTCTAGCAGCTAACTAGAGCACACGCATTTTTCACAgctcaacat
tttttcaagaaaatctcaaaattctcaaaaaacaacatttttgactATTT
TAAACGGAAATCTCATTCATATCCATCATaatgaagagaattcttcgGGA
GCAGTCGAGCAGTCACACCTTCACCATTGCAATCACCATCATCATTGGAA
GAATTGAGTGCAAGCTCACAAGATCTGGAGACTTGTACACCATCACGATG
TATCACTGATAAGAAAAAAGATCGACTCAAATGCACCGAGTGCGAGAGAA
GTGTTCACTATTCGTGTTCTGAACTTCCTCCATACTACATCCAGCTGATT
GTTGGAAAGACGAAAGGAATAAAGTTCATTTGCGTGAACTGCGTGACTAT
GACCAAGAATATTGGTGCATATGCTTCCCCAAATCAAAAGGTGAAATCTC
TCCAGAGAGACGTGGCAAATTGTGAAAACATCATCAAAATCAAAGCCGAG
AAAGAAGCAGAGCTGCTGAAGAAGTTCAAAAGCAGACAGAAATGCGGCCG
ATGCCAGGGAACAAGAACTCGCTGACCTCAAAAAGAAACTGGACAACAAT
CCAGCACTCCACACTTTGGAATACGTTGAGCAAAAGATTGAAACCAACAT
GGAGAAATTCAAGCACAGCATGCAAGAACTTATCAAAACAGAAATGAAGA
TATTGTCGGAAAAGTCTTACGCTGACGCTACAAAGATCTCTGAGGTATCT
GCCGAACAAACAACTATCAGAGAAGCTATTAGGGATGCATGGCGTGAAGA
AGAAGCAgaagaaaatgacaaaatcAAAAGATCTTGCAACGTCGTCATCC
ATGGCTTAGCAGAACAAGAACAAGAAGATGACAATTCATGGGCCGAAGGT
CTTGTTAAAGACACTCACACACGCGCTACTATCAAACGTGTCAGTCACTT
TGGAAAACCATCTCAGGAAAAGAAGCGCCCTTTATTAATCTGTCTATCTa
gcgaaaaggaaaaattttcacTTCTCGGAAACCTTCCTTCTCTCAAGN Run BLAST on NCBI protein sequence of TCONS_00063183-protein >TCONS_00063183-protein ID=TCONS_00063183-protein|Name=TCONS_00063183-protein|organism=Clytia hemisphaerica|type=polypeptide|length=133bp
MEKFKHSMQELIKTEMKILSEKSYADATKISEVSAEQTTIREAIRDAWRE
EEAEENDKIKRSCNVVIHGLAEQEQEDDNSWAEGLVKDTHTRATIKRVSH
FGKPSQEKKRPLLICLSSEKEKFSLLGNLPSLK Run BLAST on NCBI transcript from alignment at scaffold_383:269525..270772 Legend: exonthree_prime_UTRCDSfive_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00063183 ID=TCONS_00063183|Name=TCONS_00063183|organism=Clytia hemisphaerica|type=transcript|length=1248bp|location=Sequence derived from alignment at scaffold_383:269525..270772 (Clytia hemisphaerica)
NCTTGAGAGAAGGAAGGTTTCCGAGAAgtgaaaatttttccttttcgctA
GATAGACAGATTAATAAAGGGCGCTTCTTTTCCTGAGATGGTTTTCCAAA
GTGACTGACACGTTTGATAGTAGCGCGTGTGTGAGTGTCTTTAACAAGAC
CTTCGGCCCATGAATTGTCATCTTCTTGTTCTTGTTCTGCTAAGCCATGG
ATGACGACGTTGCAAGATCTTTTgattttgtcattttcttcTGCTTCTTC
TTCACGCCATGCATCCCTAATAGCTTCTCTGATAGTTGTTTGTTCGGCAG
ATACCTCAGAGATCTTTGTAGCGTCAGCGTAAGACTTTTCCGACAATATC
TTCATTTCTGTTTTGATAAGTTCTTGCATGCTGTGCTTGAATTTCTCCAT
GTTGGTTTCAATCTTTTGCTCAACGTATTCCAAAGTGTGGAGTGCTGGAT
TGTTGTCCAGTTTCTTTTTGAGGTCAGCGAGTTCTTGTTCCCTGGCATCG
GCCGCATTTCTGTCTGCTTTTGAACTTCTTCAGCAGCTCTGCTTCTTTCT
CGGCTTTGATTTTGATGATGTTTTCACAATTTGCCACGTCTCTCTGGAGA
GATTTCACCTTTTGATTTGGGGAAGCATATGCACCAATATTCTTGGTCAT
AGTCACGCAGTTCACGCAAATGAACTTTATTCCTTTCGTCTTTCCAACAA
TCAGCTGGATGTAGTATGGAGGAAGTTCAGAACACGAATAGTGAACACTT
CTCTCGCACTCGGTGCATTTGAGTCGATCTTTTTTCTTATCAGTGATACA
TCGTGATGGTGTACAAGTCTCCAGATCTTGTGAGCTTGCACTCAATTCTT
CCAATGATGATGGTGATTGCAATGGTGAAGGTGTGACTGCTCGACTGCTC
CcgaagaattctcttcattATGATGGATATGAATGAGATTTCCGTTTAAA
ATagtcaaaaatgttgttttttgagaattttgagattttcttgaaaaaat
gttgagcTGTGAAAAATGCGTGTGCTCTAGTTAGCTGCTAGAAATCTTCA
ACATGTTTCGGCCAGGGCCGTTTTCAAGGTGTATTTCTatctaaaaaaaa
atcagtttttttagcaaaaaagaatcAAGGGCAAAGACTCTCACAACGAG
AGTGGCGCTACTCAAACAACATCACATCtactttttaacaaaaaaaattt
ttgacgtcaaataaacgTTTTTCTGTGACGTGTCCTCAAAAAAATAAG Coding sequence (CDS) from alignment at scaffold_383:269525..270772 >TCONS_00063183 ID=TCONS_00063183|Name=TCONS_00063183|organism=Clytia hemisphaerica|type=CDS|length=399bp|location=Sequence derived from alignment at scaffold_383:269525..270772 (Clytia hemisphaerica)
CTTGAGAGAAGGAAGGTTTCCGAGAAgtgaaaatttttccttttcgctAG
ATAGACAGATTAATAAAGGGCGCTTCTTTTCCTGAGATGGTTTTCCAAAG
TGACTGACACGTTTGATAGTAGCGCGTGTGTGAGTGTCTTTAACAAGACC
TTCGGCCCATGAATTGTCATCTTCTTGTTCTTGTTCTGCTAAGCCATGGA
TGACGACGTTGCAAGATCTTTTgattttgtcattttcttcTGCTTCTTCT
TCACGCCATGCATCCCTAATAGCTTCTCTGATAGTTGTTTGTTCGGCAGA
TACCTCAGAGATCTTTGTAGCGTCAGCGTAAGACTTTTCCGACAATATCT
TCATTTCTGTTTTGATAAGTTCTTGCATGCTGTGCTTGAATTTCTCCAT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00063183-exon-scaffold_383-1491911889:269525..270772 | TCONS_00063183-exon-scaffold_383-1491911889:269525..270772 | Clytia hemisphaerica | exon |
| TCONS_00063183-exon-scaffold_383-1510915933:269525..270772 | TCONS_00063183-exon-scaffold_383-1510915933:269525..270772 | Clytia hemisphaerica | exon |
| TCONS_00063183-exon-scaffold_383-1575043694:269525..270772 | TCONS_00063183-exon-scaffold_383-1575043694:269525..270772 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_383 | supercontig | scaffold_383:269525..270772 . |
Blast
The following BLAST results are available for this feature:
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