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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00063185 ID=TCONS_00063185|Name=TCONS_00063185|organism=Clytia hemisphaerica|type=transcript|length=3449bpRun BLAST on NCBI protein sequence of TCONS_00063185-protein >TCONS_00063185-protein ID=TCONS_00063185-protein|Name=TCONS_00063185-protein|organism=Clytia hemisphaerica|type=polypeptide|length=1040bp MPEEQDFTQVSSYTNWMKKMSDKIKKHNELKNTQMTATINNDIKKNENSSRun BLAST on NCBI transcript from alignment at scaffold_384:26765..40806+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00063185 ID=TCONS_00063185|Name=TCONS_00063185|organism=Clytia hemisphaerica|type=transcript|length=14042bp|location=Sequence derived from alignment at scaffold_384:26765..40806+ (Clytia hemisphaerica) Coding sequence (CDS) from alignment at scaffold_384:26765..40806+ >TCONS_00063185 ID=TCONS_00063185|Name=TCONS_00063185|organism=Clytia hemisphaerica|type=CDS|length=31230bp|location=Sequence derived from alignment at scaffold_384:26765..40806+ (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Blast
BLAST of TCONS_00063185 vs. Swiss-Prot (Human)
Match: HCN2 (Potassium/sodium hyperpolarization-activated cyclic nucleotide-gated channel 2 OS=Homo sapiens GN=HCN2 PE=1 SV=3) HSP 1 Score: 411.764 bits (1057), Expect = 5.654e-126 Identity = 229/543 (42.17%), Postives = 337/543 (62.06%), Query Frame = 2
Query: 1319 GTKPNGRAASDGCTTQGSRKGSQRRTTSAEFIQEFLG----PADTPVNARLFGGKKGVQYEIERAKSYG-YVIHPCSKLRQYWDLLIMTMLVLNMMVLPLDIAFFDDNS---LISFHVISDTLCMVDIILNFRTGYHLRKEKHEFELGHKKIAIHYLKTWFTLDLISSLPLHYILLAVSGQNVTLGLKGASRAXXXXXXXXXXXXXXXXXXSRIIRGIAQYEEVYCVT----TGFIRYIKLVCMMLMVAHWNGCLHFLVPMLQDFPEKCWVQECKIVNEPWYVQYGWALFKTLSHMLCIGYGRYIPALLDEALITIFSMVTGATFYALFIAHSMAFIIQRDSSKSTYQEKIKQIEEYMHHRNVPPEIKKRISNYFEHKYHQGRFFDEQAIMSVIGKPLREEIVHHTCKDLVESVPFLKAASPHFVTAVLDRLTFDVYLSGDAVIKEGTTGDEMFFVRKGCLDVSVKGRLIYQLKGGEYFGDICMLTDDTKHIITVEARTTCDLFSLSYKTLATLLIQYPEVRPILEQAALNQLMNITQTIELL 2911
G P A S+ G +GSQ A F+Q G P + R+FG +K V+ E ER KS G ++IHP S R YWD ++ +V N++++P+ I FF D + I F+V+SDT ++D++LNFRTG + ++ E L +KI YL+TWF +D +SS+P+ YI L V + + + +RAL+ ++ K+L+LL+LLRLSR+IR I Q+EE++ +T + +R L+ MML++ HW+GCL FLVPMLQDFP CWV +VN W Y +ALFK +SHMLCIGYGR P + + +T+ SM+ GAT YA+FI H+ A I DSS+ YQEK KQ+E+YM +P + +++I +Y+EH+Y QG+ FDE +I+ + PLREEIV+ C+ LV S+P A P+FVTA+L +L F+V+ GD +I+EGT G +M+F++ G + V KG +L G YFG+IC+LT + +V A T C L+SLS +L +YP +R E A+++L I + +L
Sbjct: 137 GPGPAEEAGSEEAGPAGEPRGSQ-----ASFMQRQFGALLQPGVNKFSLRMFGSQKAVEREQERVKSAGAWIIHPYSDFRFYWDFTMLLFMVGNLIIIPVGITFFKDETTAPWIVFNVVSDTFFLMDLVLNFRTGIVI-EDNTEIILDPEKIKKKYLRTWFVVDFVSSIPVDYIFLIVE-KGIDSEVYKTARALRIVRFTKILSLLRLLRLSRLIRYIHQWEEIFHMTYDLASAVMRICNLISMMLLLCHWDGCLQFLVPMLQDFPRNCWVSINGMVNHSWSELYSFALFKAMSHMLCIGYGRQAPESMTDIWLTMLSMIVGATCYAMFIGHATALIQSLDSSRRQYQEKYKQVEQYMSFHKLPADFRQKIHDYYEHRY-QGKMFDEDSILGELNGPLREEIVNFNCRKLVASMPLFANADPNFVTAMLTKLKFEVFQPGDYIIREGTIGKKMYFIQHGVVSVLTKGNKEMKLSDGSYFGEICLLTRG-RRTASVRADTYCRLYSLSVDNFNEVLEEYPMMRRAFETVAIDRLDRIGKKNSIL 670 The following BLAST results are available for this feature:
BLAST of TCONS_00063185 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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