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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00063196 ID=TCONS_00063196|Name=TCONS_00063196|organism=Clytia hemisphaerica|type=transcript|length=1291bp
GTGATTGGTATCTGCTTGGATATTACTGGAGATCTCGTTGGTATGTTGAT
TTGAGATTGCCATTTGGACTTAGACCTTCTCCTTTTATTTTCACTACCTT
TTCTGACGCACTTCAATGGATTTTAGTCGTCAAGTATAACATTACCGCTC
ATGTACATTACCTTGATGATTTTTTCGTTGTTGGCAGAACAAAGGAAGAG
TGTCAGTCTCGTATGGATCTTATGGTTCAGGTCTTTGACTTCTTAGGTGT
TCCTATAGCAGAGGACAAGTTCGAGGGCCCATCTCAGAGGATTGTGTTCT
TGGGGATTGAGATAGATTCTGTTGACTTTACCATCCGTCTACCTGCAGAC
AAAAAATTTAGTCTTTCCAATACTGTTGAATGTTGGCTAGTTCGGAAGAA
ATGCACCAAGCTTGATCTTCTTTCTCTCATAGGTTCTCTTTCCTTTGCAT
GCAAGGTTATCAAACCTGGTAGAATTTTCCTGCGTCGTCTCATTAACCTT
TCTACTTCTGTAGCTAAGCTCCATCATCATATCTCTCTCTCTAAATCAGT
TCAAGAAGATCTTATTATGTGGTCTACTTTCCTCCGCTCTTGGAATGGGA
AATCCATTATGCTGAGCCCCGTTGTGTCTTCCAAATCCCTAGCTTTGTCT
ACGGATGCATCCTTCTTGGGTTTCGGTTCCTTTTTTCAGGGACATTGGTT
CTCTGTTCCCTGGCCTTCCCCTCCTGCTCAGCACAAAGGAAAACCTATTC
ACATTGCTATCCTAGAGTTGTTTGCCATCTATGCTGCCCTCTCTTGCTGG
AAACATTCGTTCTTTTCCCAACAAGTCTTGATCTTCACAGACAATGAGAC
CATTGTCTCTGTCTGGGCTTCTGGTACCTCCAAAGATCCTAGAATCATGT
GTATTGTCCGAGCTCTTTTCTTCTTATCTGTAGAAATCAACGCCTCCTTT
ACTTTCCAACATGTCGCAGGCAAAGACAACATCTTTTCTGATCTTCTATC
TCGTCTACAGGTCGAGAAATTCAAATCCATCTGCCCAGCTTCAGATCAAT
GTCCGTCAGTCATTCACACCTCTATCATGGACCTTTGGGAAGAGATCTTG
TCCATTTCTTGAGACAGTCTACAGCTCCGTCAACACAAAACACCTACAGA
TCAGGCATCCGTTCTTACACAACATTCTGTCTTTCGAATCAAGCTACTCC
TTTTCCAGCGACAGAAGCTTCTTTGTGTTTTTATGCTGTTTCCTTAGCCA
ACCGCAAGCTATCGTTCAAGACTATCAAAGTGTATATATTT Run BLAST on NCBI transcript from alignment at scaffold_384:207033..208640+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00063196 ID=TCONS_00063196|Name=TCONS_00063196|organism=Clytia hemisphaerica|type=transcript|length=1608bp|location=Sequence derived from alignment at scaffold_384:207033..208640+ (Clytia hemisphaerica)
GTGATTGGTATCTGCTTGGATATTACTGGAGATCTCGTTGGTATGTTGAT
TTGAGATTGCCATTTGGACTTAGACCTTCTCCTTTTATTTTCACTACCTT
TTCTGACGCACTTCAATGGATTTTAGTCGTCAAGTATAACATTACCGCTC
ATGTACATTACCTTGATGATTTTTTCGTTGTTGGCAGAACAAAGGAAGAG
TGTCAGTCTCGTATGGATCTTATGGTTCAGGTCTTTGACTTCTTAGGTGT
TCCTATAGCAGAGGACAAGTTCGAGGGCCCATCTCAGAGGATTGTGTTCT
TGGGGATTGAGATAGATTCTGTTGACTTTACCATCCGTCTACCTGCAGAC
AAAAAATTTAGTCTTTCCAATACTGTTGAATGTTGGCTAGTTCGGAAGAA
ATGCACCAAGCTTGATCTTCTTTCTCTCATAGGTTCTCTTTCCTTACATG
CAAGGTTGTCAAACCTGGTAGGATTTTCCTGCTTCTTTCTACTTCTGTAA
TTAAGCTCCATCATCATATCTGTCTCCCTAAATCAGTTCAAGAAGATCTT
ATTACTATTTTCCGCCGCTCTTGGAATGGGAAATACATTATGCTGAGCCC
CGTCGTGTCTTCCAAATCCCTAGCTTTGTCTActgtagcctgggaatcca
agctcataattttagaaaaaacaaaaaatacctcacctcacaaagttcta
aaattatagagcttggtgcaggtagattagtctgacacaNCTCTCATAGG
TTCTCTTTCCTTTGCATGCAAGGTTATCAAACCTGGTAGAATTTTCCTGC
GTCGTCTCATTAACCTTTCTACTTCTGTAGCTAAGCTCCATCATCATATC
TCTCTCTCTAAATCAGTTCAAGAAGATCTTATTATGTGGTCTACTTTCCT
CCGCTCTTGGAATGGGAAATCCATTATGCTGAGCCCCGTTGTGTCTTCCA
AATCCCTAGCTTTGTCTACGGATGCATCCTTCTTGGGTTTCGGTTCCTTT
TTTCAGGGACATTGGTTCTCTGTTCCCTGGCCTTCCCCTCCTGCTCAGCA
CAAAGGAAAACCTATTCACATTGCTATCCTAGAGTTGTTTGCCATCTATG
CTGCCCTCTCTTGCTGGAAACATTCGTTCTTTTCCCAACAAGTCTTGATC
TTCACAGACAATGAGACCATTGTCTCTGTCTGGGCTTCTGGTACCTCCAA
AGATCCTAGAATCATGTGTATTGTCCGAGCTCTTTTCTTCTTATCTGTAG
AAATCAACGCCTCCTTTACTTTCCAACATGTCGCAGGCAAAGACAACATC
TTTTCTGATCTTCTATCTCGTCTACAGGTCGAGAAATTCAAATCCATCTG
CCCAGCTTCAGATCAATGTCCGTCAGTCATTCACACCTCTATCATGGACC
TTTGGGAAGAGATCTTGTCCATTTCTTGAGACAGTCTACAGCTCCGTCAA
CACAAAACACCTACAGATCAGGCATCCGTTCTTACACAACATTCTGTCTT
TCGAATCAAGCTACTCCTTTTCCAGCGACAGAAGCTTCTTTGTGTTTTTA
TGCTGTTTCCTTAGCCAACCGCAAGCTATCGTTCAAGACTATCAAAGTGT
ATATATTT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00063196-exon-scaffold_384-1491911889:207033..207464 | TCONS_00063196-exon-scaffold_384-1491911889:207033..207464 | Clytia hemisphaerica | exon |
| TCONS_00063196-exon-scaffold_384-1510915933:207033..207464 | TCONS_00063196-exon-scaffold_384-1510915933:207033..207464 | Clytia hemisphaerica | exon |
| TCONS_00063196-exon-scaffold_384-1575043694:207033..207464 | TCONS_00063196-exon-scaffold_384-1575043694:207033..207464 | Clytia hemisphaerica | exon |
| TCONS_00063196-exon-scaffold_384-1491911889:207782..208640 | TCONS_00063196-exon-scaffold_384-1491911889:207782..208640 | Clytia hemisphaerica | exon |
| TCONS_00063196-exon-scaffold_384-1510915933:207782..208640 | TCONS_00063196-exon-scaffold_384-1510915933:207782..208640 | Clytia hemisphaerica | exon |
| TCONS_00063196-exon-scaffold_384-1575043694:207782..208640 | TCONS_00063196-exon-scaffold_384-1575043694:207782..208640 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_384 | supercontig | scaffold_384:207033..208640 + |
Blast
The following BLAST results are available for this feature:
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