TCONS_00063209 (transcript) - C. hemisphaerica

Overview
NameTCONS_00063209
Unique NameTCONS_00063209
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length126

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00063209 ID=TCONS_00063209|Name=TCONS_00063209|organism=Clytia hemisphaerica|type=transcript|length=126bp
AAGACATCTTACTACTTGGTGAAGTAGGCTGGTTGGGGAACTGAAGACAG
TACTTGGGAGCCAAGAGAAAATTTGCTGGATGAGCGGTTACTGCAGTTAT
GGGAAACACCAGTGGTAGACTTGAGT
Run BLAST on NCBI

transcript from alignment at scaffold_384:172879..173198-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00063209 ID=TCONS_00063209|Name=TCONS_00063209|organism=Clytia hemisphaerica|type=transcript|length=320bp|location=Sequence derived from alignment at scaffold_384:172879..173198- (Clytia hemisphaerica)
AAGACATCTTACTACTTGGTGAAGTAGGCTGGTTGGGGAACTGAAGACAG
TACTTGGGAGCCAAGAGAAAATTTGCTGGATGAGCGGTTACTGCAGTAAG
TAACAGAGTTATTTATGCCTTGTTCCTGAGCTTAGGTTTCCCAAAGATAG
GTTGGAGGCCACTTATTCTGGAAATGAAGATTTTTTTTGAATTTTTTTTG
ACGAAGGGTGACCTTAAAGTGGATTTAGTAGATTTTCACTTGCACGATCC
AGGCATGATTTCAGGGTTTCAGATTCCTTTGATTTATAGGTTATGGGAAA
CACCAGTGGTAGACTTGAGT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_039600XLOC_039600Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00063209-exon-scaffold_384-1575043694:173104..173198TCONS_00063209-exon-scaffold_384-1575043694:173104..173198Clytia hemisphaericaexon
TCONS_00063209-exon-scaffold_384-1575043694:172879..172909TCONS_00063209-exon-scaffold_384-1575043694:172879..172909Clytia hemisphaericaexon
TCONS_00063209-exon-scaffold_384-1510915933:173104..173198TCONS_00063209-exon-scaffold_384-1510915933:173104..173198Clytia hemisphaericaexon
TCONS_00063209-exon-scaffold_384-1510915933:172879..172909TCONS_00063209-exon-scaffold_384-1510915933:172879..172909Clytia hemisphaericaexon
TCONS_00063209-exon-scaffold_384-1491911889:173104..173198TCONS_00063209-exon-scaffold_384-1491911889:173104..173198Clytia hemisphaericaexon
TCONS_00063209-exon-scaffold_384-1491911889:172879..172909TCONS_00063209-exon-scaffold_384-1491911889:172879..172909Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_384supercontigscaffold_384:172879..173198 -
Expression
No biomaterial libraries express this feature.
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00063209 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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