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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00063218 ID=TCONS_00063218|Name=TCONS_00063218|organism=Clytia hemisphaerica|type=transcript|length=685bp
ATATTACTTGATTAACTTAGATCAACATCCTAAGCCATTCTCCGTTGTTC
AAGTGGAATTCAGGTTACAAAAGAGGACCTTTATATGGCCAAGCTTTTTC
AACGATACACCACCAGTATCAAAATGTGTAAATTACAGACCAGCACCTGC
AGGCATGTTTCAAATTTTCGGACCTATAAATGACTCTGATACAAAATGGG
AAAAAGAGGTTGGCTGGTACTACAAAAGATGTCCGTATAATACTTTCAAA
CAGAACCTTGGTAACGGATCTTGTTACCAATGTCCTCGATTCCAAATTTC
CAATTCTGATCAAACACAGTGTTTTGATCCCTATGAAACAAGAATtgttt
tcaatttgaaaacCTCCGAAGGTACGATTTTAATCATACTGGTTATTTTG
ATAACAGTACTAAGTTTGTTATTCGTGTCTTGTTATAATCTTCACCGTAA
CACACCAGTCGTCAGAAGTTCACAACTTGCCTTAACTAATATACAATTGA
TATCACATATCTTGATCGCCCTGGTATCTTTTATTGGTCAACAATGGATA
GACCAGCCTATCATATGTATATCAAATGCTGGCATCATTGGAGTTTTATT
GGCGTTGAATTTAGCGTCAAGCATCGTTAAAACACAAACGGTGGTTACTA
TCTTcaaatcaagacgtaaaatctCGGTGAGTTCG Run BLAST on NCBI protein sequence of TCONS_00063218-protein >TCONS_00063218-protein ID=TCONS_00063218-protein|Name=TCONS_00063218-protein|organism=Clytia hemisphaerica|type=polypeptide|length=228bp
YYLINLDQHPKPFSVVQVEFRLQKRTFIWPSFFNDTPPVSKCVNYRPAPA
GMFQIFGPINDSDTKWEKEVGWYYKRCPYNTFKQNLGNGSCYQCPRFQIS
NSDQTQCFDPYETRIVFNLKTSEGTILIILVILITVLSLLFVSCYNLHRN
TPVVRSSQLALTNIQLISHILIALVSFIGQQWIDQPIICISNAGIIGVLL
ALNLASSIVKTQTVVTIFKSRRKISVSS Run BLAST on NCBI transcript from alignment at scaffold_384:136650..137334 Legend: exonCDSfive_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00063218 ID=TCONS_00063218|Name=TCONS_00063218|organism=Clytia hemisphaerica|type=transcript|length=685bp|location=Sequence derived from alignment at scaffold_384:136650..137334 (Clytia hemisphaerica)
CGAACTCACCGagattttacgtcttgatttgAAGATAGTAACCACCGTTT
GTGTTTTAACGATGCTTGACGCTAAATTCAACGCCAATAAAACTCCAATG
ATGCCAGCATTTGATATACATATGATAGGCTGGTCTATCCATTGTTGACC
AATAAAAGATACCAGGGCGATCAAGATATGTGATATCAATTGTATATTAG
TTAAGGCAAGTTGTGAACTTCTGACGACTGGTGTGTTACGGTGAAGATTA
TAACAAGACACGAATAACAAACTTAGTACTGTTATCAAAATAACCAGTAT
GATTAAAATCGTACCTTCGGAGgttttcaaattgaaaacaATTCTTGTTT
CATAGGGATCAAAACACTGTGTTTGATCAGAATTGGAAATTTGGAATCGA
GGACATTGGTAACAAGATCCGTTACCAAGGTTCTGTTTGAAAGTATTATA
CGGACATCTTTTGTAGTACCAGCCAACCTCTTTTTCCCATTTTGTATCAG
AGTCATTTATAGGTCCGAAAATTTGAAACATGCCTGCAGGTGCTGGTCTG
TAATTTACACATTTTGATACTGGTGGTGTATCGTTGAAAAAGCTTGGCCA
TATAAAGGTCCTCTTTTGTAACCTGAATTCCACTTGAACAACGGAGAATG
GCTTAGGATGTTGATCTAAGTTAATCAAGTAATAT Coding sequence (CDS) from alignment at scaffold_384:136650..137334 >TCONS_00063218 ID=TCONS_00063218|Name=TCONS_00063218|organism=Clytia hemisphaerica|type=CDS|length=684bp|location=Sequence derived from alignment at scaffold_384:136650..137334 (Clytia hemisphaerica)
CGAACTCACCGagattttacgtcttgatttgAAGATAGTAACCACCGTTT
GTGTTTTAACGATGCTTGACGCTAAATTCAACGCCAATAAAACTCCAATG
ATGCCAGCATTTGATATACATATGATAGGCTGGTCTATCCATTGTTGACC
AATAAAAGATACCAGGGCGATCAAGATATGTGATATCAATTGTATATTAG
TTAAGGCAAGTTGTGAACTTCTGACGACTGGTGTGTTACGGTGAAGATTA
TAACAAGACACGAATAACAAACTTAGTACTGTTATCAAAATAACCAGTAT
GATTAAAATCGTACCTTCGGAGgttttcaaattgaaaacaATTCTTGTTT
CATAGGGATCAAAACACTGTGTTTGATCAGAATTGGAAATTTGGAATCGA
GGACATTGGTAACAAGATCCGTTACCAAGGTTCTGTTTGAAAGTATTATA
CGGACATCTTTTGTAGTACCAGCCAACCTCTTTTTCCCATTTTGTATCAG
AGTCATTTATAGGTCCGAAAATTTGAAACATGCCTGCAGGTGCTGGTCTG
TAATTTACACATTTTGATACTGGTGGTGTATCGTTGAAAAAGCTTGGCCA
TATAAAGGTCCTCTTTTGTAACCTGAATTCCACTTGAACAACGGAGAATG
GCTTAGGATGTTGATCTAAGTTAATCAAGTAATA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00063218-exon-scaffold_384-1491911889:136650..137334 | TCONS_00063218-exon-scaffold_384-1491911889:136650..137334 | Clytia hemisphaerica | exon |
| TCONS_00063218-exon-scaffold_384-1510915933:136650..137334 | TCONS_00063218-exon-scaffold_384-1510915933:136650..137334 | Clytia hemisphaerica | exon |
| TCONS_00063218-exon-scaffold_384-1575043694:136650..137334 | TCONS_00063218-exon-scaffold_384-1575043694:136650..137334 | Clytia hemisphaerica | exon |
The following polypeptide feature(s) derives from this transcript:
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_384 | supercontig | scaffold_384:136650..137334 . |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
| Term | Definition |
|---|
| IPR017978 | GPCR_3_C |
Vocabulary: Molecular Function
| Term | Definition |
|---|
| GO:0004930 | G-protein coupled receptor activity |
Vocabulary: Biological Process
| Term | Definition |
|---|
| GO:0007186 | G-protein coupled receptor signaling pathway |
Vocabulary: Cellular Component
| Term | Definition |
|---|
| GO:0016021 | integral component of membrane |
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
| Category |
Term Accession |
Term Name |
| biological_process |
GO:0007186 |
G-protein coupled receptor signaling pathway |
| cellular_component |
GO:0016021 |
integral component of membrane |
| molecular_function |
GO:0004930 |
G-protein coupled receptor activity |
Blast
The following BLAST results are available for this feature:
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