TCONS_00063219 (transcript) - C. hemisphaerica

Overview
NameTCONS_00063219
Unique NameTCONS_00063219
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length637

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00063219 ID=TCONS_00063219|Name=TCONS_00063219|organism=Clytia hemisphaerica|type=transcript|length=637bp
TAGCTTCAAACACCAGATACCAAGAGCTCAAATAGACGGTGATGTTTATC
TGATCGGTTTGTTTTCAATCTGTCTGGAAGGAGCTAACAGTAATCACCAT
GGTCAAACAACATTCGAATGGGACGAAAAGGCTAACATAAACAGCAAACA
TAATTCAAAAGATCAGAATTCATCATATTTTAGAAGAGATGCTATGCATA
tgtatttgaattttgaaaaaacagtAGCCGCTGGAAATTATATGAACGAA
AAATAccaaatgaagacattgcattttGGAACCATATCTTATGATGTTTG
CCACAGAGAATCCGATTTATTGGAGATTCTACTAAAACTTGTATTGAGTC
CTGAATATTTCCATTTGAGTCCTAAATATCAACCGATATCGCTTATGTAT
GCTGCAATATATGCTTATATGGACAACGACTTAACAAAGCTGGCTGGGCA
GATTCTATTTTTTAGTACGGTTCCATTTATTGCAATTTCAGACCAGCAAG
AAAGGATGTTAGCCCGTAATATCTTTCCATTATACAATCAAATCGGTATC
CAAAAACAAGACATGTATCAACTGAAAAATGTGTTCGATTTGTTTGGCTG
GAAATCTATAACGATAATCACTTTAACCTCAAGCCGG
Run BLAST on NCBI

protein sequence of TCONS_00063219-protein

>TCONS_00063219-protein ID=TCONS_00063219-protein|Name=TCONS_00063219-protein|organism=Clytia hemisphaerica|type=polypeptide|length=212bp
SFKHQIPRAQIDGDVYLIGLFSICLEGANSNHHGQTTFEWDEKANINSKH
NSKDQNSSYFRRDAMHMYLNFEKTVAAGNYMNEKYQMKTLHFGTISYDVC
HRESDLLEILLKLVLSPEYFHLSPKYQPISLMYAAIYAYMDNDLTKLAGQ
ILFFSTVPFIAISDQQERMLARNIFPLYNQIGIQKQDMYQLKNVFDLFGW
KSITIITLTSSR
Run BLAST on NCBI

transcript from alignment at scaffold_384:139075..139711

Legend: exonCDSfive_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00063219 ID=TCONS_00063219|Name=TCONS_00063219|organism=Clytia hemisphaerica|type=transcript|length=637bp|location=Sequence derived from alignment at scaffold_384:139075..139711 (Clytia hemisphaerica)
CCGGCTTGAGGTTAAAGTGATTATCGTTATAGATTTCCAGCCAAACAAAT
CGAACACATTTTTCAGTTGATACATGTCTTGTTTTTGGATACCGATTTGA
TTGTATAATGGAAAGATATTACGGGCTAACATCCTTTCTTGCTGGTCTGA
AATTGCAATAAATGGAACCGTACTAAAAAATAGAATCTGCCCAGCCAGCT
TTGTTAAGTCGTTGTCCATATAAGCATATATTGCAGCATACATAAGCGAT
ATCGGTTGATATTTAGGACTCAAATGGAAATATTCAGGACTCAATACAAG
TTTTAGTAGAATCTCCAATAAATCGGATTCTCTGTGGCAAACATCATAAG
ATATGGTTCCaaaatgcaatgtcttcatttggTATTTTTCGTTCATATAA
TTTCCAGCGGCTactgttttttcaaaattcaaatacaTATGCATAGCATC
TCTTCTAAAATATGATGAATTCTGATCTTTTGAATTATGTTTGCTGTTTA
TGTTAGCCTTTTCGTCCCATTCGAATGTTGTTTGACCATGGTGATTACTG
TTAGCTCCTTCCAGACAGATTGAAAACAAACCGATCAGATAAACATCACC
GTCTATTTGAGCTCTTGGTATCTGGTGTTTGAAGCTA

Coding sequence (CDS) from alignment at scaffold_384:139075..139711

>TCONS_00063219 ID=TCONS_00063219|Name=TCONS_00063219|organism=Clytia hemisphaerica|type=CDS|length=636bp|location=Sequence derived from alignment at scaffold_384:139075..139711 (Clytia hemisphaerica)
CCGGCTTGAGGTTAAAGTGATTATCGTTATAGATTTCCAGCCAAACAAAT
CGAACACATTTTTCAGTTGATACATGTCTTGTTTTTGGATACCGATTTGA
TTGTATAATGGAAAGATATTACGGGCTAACATCCTTTCTTGCTGGTCTGA
AATTGCAATAAATGGAACCGTACTAAAAAATAGAATCTGCCCAGCCAGCT
TTGTTAAGTCGTTGTCCATATAAGCATATATTGCAGCATACATAAGCGAT
ATCGGTTGATATTTAGGACTCAAATGGAAATATTCAGGACTCAATACAAG
TTTTAGTAGAATCTCCAATAAATCGGATTCTCTGTGGCAAACATCATAAG
ATATGGTTCCaaaatgcaatgtcttcatttggTATTTTTCGTTCATATAA
TTTCCAGCGGCTactgttttttcaaaattcaaatacaTATGCATAGCATC
TCTTCTAAAATATGATGAATTCTGATCTTTTGAATTATGTTTGCTGTTTA
TGTTAGCCTTTTCGTCCCATTCGAATGTTGTTTGACCATGGTGATTACTG
TTAGCTCCTTCCAGACAGATTGAAAACAAACCGATCAGATAAACATCACC
GTCTATTTGAGCTCTTGGTATCTGGTGTTTGAAGCT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_039609XLOC_039609Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00063219-exon-scaffold_384-1491911889:139075..139711TCONS_00063219-exon-scaffold_384-1491911889:139075..139711Clytia hemisphaericaexon
TCONS_00063219-exon-scaffold_384-1510915933:139075..139711TCONS_00063219-exon-scaffold_384-1510915933:139075..139711Clytia hemisphaericaexon
TCONS_00063219-exon-scaffold_384-1575043694:139075..139711TCONS_00063219-exon-scaffold_384-1575043694:139075..139711Clytia hemisphaericaexon
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00063219-proteinTCONS_00063219-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_384supercontigscaffold_384:139075..139711 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.0828919	0	0	0	0	0	0	0	0	0	0	0	0.165386	0	0	0.050512	0.0622267	0.191341	0.44058	0.184414	0.721302	0.586376	0.0950422	0.864072	0.266992	0.158856	0	0	0	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00063219 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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