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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00063224 ID=TCONS_00063224|Name=TCONS_00063224|organism=Clytia hemisphaerica|type=transcript|length=1042bp
GAGAAATATTAACATCTTCCATACCTTTCCTATTAGGGCACGAATGTCTC
CAATGGCCAATCTGACCGCACTCGAAGCAACCATTGACGGGATGTATTGG
ATTCTGCAAAGATACGATTCTTGGAGAGGTTGCTTGCTGTGGAATAAAAA
ATCGTGGTCGTTGAAACGATGGAGGTACCTGATTGAAATTCTGTTGGAAT
GATGGCACccgattttgctgaaaaggCTGCAACTGAAGTTGTTGACGATA
TTGATGTGTACGAGTTGTATTTGACCTGGACTGCTGCTTCTTTTTCTGCA
ACGCTCTACTCTCGGCTTGACGGATACGTTTATCGTCAGCGCTATCAGAT
GCTAGTTCGTCCTGTACGTATTCATCTACAGTGGCCCAACCGCCCGGAGA
TTTGTCTGCAATACGGATTACTTTCTgacattttgagattttctcttcGA
TGTCATCTAGACGACTGGCCAACCTTTCTTCGAACCAGCTGCAGAAAGGT
CCCTGGCTTCGTCAATTGACTCTCTGATATCTTCCAAGAAATTATAATTT
AGcctgttgtttttgtatttaaaaAGAATCTCTGATTTTGCCTTCTTTCC
TTTACTGGAAAGTTGGATGTCCATTTTCCTTTTGATATCCTGTGTATCCT
CTATCAAAGAAGttaaattttgttgaaaagcACCAATCTGAGCCCAAGGA
TTCTGTGAAGGATCAAAAACGGGGATAAAAGTGTGATCACCTGTTTCACT
TGTGGTGCTTGTGTCCTCTGTGTTTGTAGACATCTCTAAAAGAGGATTTT
TCGACTTCTGGAccttctttgttttctttggaGGACGGTTCTCGTCTGCC
ATGATTATGGTTCTGCTCATCAAGTTGCTAGAAGTTTCTTGTTTGAGGCT
AAGTTCGACGTGtgattaaaactatttttggcTACCCTTTTGATTAGCAC
GCGAAACTCTTGAAATCTGAATAGTTTACGGAACGCACATTTAGGTCAAA
GTCTACATTTCTCAAAACGCCTCAACTAATATACGGAACGCC Run BLAST on NCBI protein sequence of TCONS_00063224-protein >TCONS_00063224-protein ID=TCONS_00063224-protein|Name=TCONS_00063224-protein|organism=Clytia hemisphaerica|type=polypeptide|length=137bp
MSRTIIMADENRPPKKTKKVQKSKNPLLEMSTNTEDTSTTSETGDHTFIP
VFDPSQNPWAQIGAFQQNLTSLIEDTQDIKRKMDIQLSSKGKKAKSEILF
KYKNNRLNYNFLEDIRESIDEARDLSAAGSKKGWPVV Run BLAST on NCBI transcript from alignment at scaffold_384:173961..175002 Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00063224 ID=TCONS_00063224|Name=TCONS_00063224|organism=Clytia hemisphaerica|type=transcript|length=1042bp|location=Sequence derived from alignment at scaffold_384:173961..175002 (Clytia hemisphaerica)
GGCGTTCCGTATATTAGTTGAGGCGTTTTGAGAAATGTAGACTTTGACCT
AAATGTGCGTTCCGTAAACTATTCAGATTTCAAGAGTTTCGCGTGCTAAT
CAAAAGGGTAgccaaaaatagttttaatcaCACGTCGAACTTAGCCTCAA
ACAAGAAACTTCTAGCAACTTGATGAGCAGAACCATAATCATGGCAGACG
AGAACCGTCCtccaaagaaaacaaagaaggTCCAGAAGTCGAAAAATCCT
CTTTTAGAGATGTCTACAAACACAGAGGACACAAGCACCACAAGTGAAAC
AGGTGATCACACTTTTATCCCCGTTTTTGATCCTTCACAGAATCCTTGGG
CTCAGATTGGTgcttttcaacaaaatttaaCTTCTTTGATAGAGGATACA
CAGGATATCAAAAGGAAAATGGACATCCAACTTTCCAGTAAAGGAAAGAA
GGCAAAATCAGAGATTCTttttaaatacaaaaacaacaggCTAAATTATA
ATTTCTTGGAAGATATCAGAGAGTCAATTGACGAAGCCAGGGACCTTTCT
GCAGCTGGTTCGAAGAAAGGTTGGCCAGTCGTCTAGATGACATCgaagag
aaaatctcaaaatgtcAGAAAGTAATCCGTATTGCAGACAAATCTCCGGG
CGGTTGGGCCACTGTAGATGAATACGTACAGGACGAACTAGCATCTGATA
GCGCTGACGATAAACGTATCCGTCAAGCCGAGAGTAGAGCGTTGCAGAAA
AAGAAGCAGCAGTCCAGGTCAAATACAACTCGTACACATCAATATCGTCA
ACAACTTCAGTTGCAGccttttcagcaaaatcggGTGCCATCATTCCAAC
AGAATTTCAATCAGGTACCTCCATCGTTTCAACGACCACGATTTTTTATT
CCACAGCAAGCAACCTCTCCAAGAATCGTATCTTTGCAGAATCCAATACA
TCCCGTCAATGGTTGCTTCGAGTGCGGTCAGATTGGCCATTGGAGACATT
CGTGCCCTAATAGGAAAGGTATGGAAGATGTTAATATTTCTC Coding sequence (CDS) from alignment at scaffold_384:173961..175002 >TCONS_00063224 ID=TCONS_00063224|Name=TCONS_00063224|organism=Clytia hemisphaerica|type=CDS|length=414bp|location=Sequence derived from alignment at scaffold_384:173961..175002 (Clytia hemisphaerica)
ATGAGCAGAACCATAATCATGGCAGACGAGAACCGTCCtccaaagaaaac
aaagaaggTCCAGAAGTCGAAAAATCCTCTTTTAGAGATGTCTACAAACA
CAGAGGACACAAGCACCACAAGTGAAACAGGTGATCACACTTTTATCCCC
GTTTTTGATCCTTCACAGAATCCTTGGGCTCAGATTGGTgcttttcaaca
aaatttaaCTTCTTTGATAGAGGATACACAGGATATCAAAAGGAAAATGG
ACATCCAACTTTCCAGTAAAGGAAAGAAGGCAAAATCAGAGATTCTtttt
aaatacaaaaacaacaggCTAAATTATAATTTCTTGGAAGATATCAGAGA
GTCAATTGACGAAGCCAGGGACCTTTCTGCAGCTGGTTCGAAGAAAGGTT
GGCCAGTCGTCTAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00063224-exon-scaffold_384-1491911889:173961..175002 | TCONS_00063224-exon-scaffold_384-1491911889:173961..175002 | Clytia hemisphaerica | exon |
| TCONS_00063224-exon-scaffold_384-1510915933:173961..175002 | TCONS_00063224-exon-scaffold_384-1510915933:173961..175002 | Clytia hemisphaerica | exon |
| TCONS_00063224-exon-scaffold_384-1575043694:173961..175002 | TCONS_00063224-exon-scaffold_384-1575043694:173961..175002 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_384 | supercontig | scaffold_384:173961..175002 . |
Blast
The following BLAST results are available for this feature:
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