|
|
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00063255 ID=TCONS_00063255|Name=TCONS_00063255|organism=Clytia hemisphaerica|type=transcript|length=1230bp
GCTTTCAATATTTTAAGGAATATGAGGTACCCAATTCATAAAGAACTTCC
TTTATATGCAAAAAGGCTTACAAACAGGAcaaaaaatattcgaattaaaA
ATATCTTATTATAATTGTTATAATAATTTATATGGTAAATAAAGTgctgg
taaaaaaaaattatcttaaaaattgtcaatttgGAGAAACGAATAAAAAC
AACAAGTATATGCTTAAAAGCTTCTATTTGAAATACTCTTCGAATTTTAT
CTTGCATCAAAATCCTGATATCCTAGAACTTATAGTGATCGTGAACATAA
TGGTTTGATAGGTGCCAATAGATGGATAATACTTAAGACTCGGATGGAGG
ATATATCAGACTTCTGTTGTTGCGATAATCAGTTCTCCAAACCAGATCAT
ATGTTAATGACAATCGACAGTCTATTCCTGGTCTCTCATTGATGATGTTG
ATATATCACAATAATATGTGGATGTTGTGGAGAAGTTTGTTGGTGATTGC
AAGGTTTTTTGTTGCTAATACGGTATGAAGTTGATTATCATTGCATGGTG
GCTAATAGACATAATGTTTGGGTGTTCTTGAGGAGATTGTTGAGTGTTTT
GTTGAGGAGATTGTTGAGTGTTTTGTTGAGATGGATGACTAGTCAATGCT
GGTGTGAGGATTTTCATTCTGCTGTTTGTTGATTATCAATAATTATTTCT
GAAGGatgCTGATACAAATGTTGATATTTCTTTAAGAAGTAAAGTGTTGT
GGATGTTGTTGAGGATTTTGTTGTGTGTGATGTTGAGGATGAGCTTGTTG
TTGATGTTGGTGTTGCTGTTGAGGATTTGCAGTCTGTTGTGGTTGCTGTT
GTAANGATGTTGGTGTTGCTGTTGAGGATTTGCAgtctgttgttgttgtg
gttgctGTTGTAGTTGTTGTTGATTATTAGGAATTTCCAATTGAGCTATC
ATTAGTGTGCGTTCAACTTGTTTAAAAGTCATGTCAAGTCGATTACCAGC
CATTTCAACTTCacattgtaaatttttcacAGCTTCAAATACTGAAGTGT
CTATATGTAGTTCGTTTGAAAGATTTAAAAAGTTCGGATGGTCTTTGAAT
TTTTGTAGAAACATGCTGAACTGGTTGATGTATTCCCTAGAAGAACGAAA
GAAAATTGCTAGAGtgctcccgtttcatatcaaacacatgtttcatatcg
ggacagtgtctgcctattgttatattgtgc Run BLAST on NCBI transcript from alignment at scaffold_385:270072..271433+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00063255 ID=TCONS_00063255|Name=TCONS_00063255|organism=Clytia hemisphaerica|type=transcript|length=1362bp|location=Sequence derived from alignment at scaffold_385:270072..271433+ (Clytia hemisphaerica)
GCTTTCAATATTTTAAGGAATATGAGGTACCCAATTCATAAAGAACTTCC
TTTATATGCAAAAAGGCTTACAAACAGGAcaaaaaatattcgaattaaaA
ATATCTTATTATAATTGTTATAATAATTTATATGGTAAATAAAGTgctgg
taaaaaaaaattatcttaaaaattgtcaatttgGAGAAACGAATAAAAAC
AACAAGTATATGCTTAAAAGCTTCTATTTGAAATACTCTTCGAATTTTAT
CTTGCATCAAAATCCTGATATCCTAGAACTTATAGTGATCGTGAACATAA
TGGTTTGATAGGTGCCAATAGATGGATAATACTTAAGACTCGGATGGAGG
ATATATCAGACTTCTGTTGTTGCGATAATCAGTTCTCCAAACCAGATCAT
ATGTTAATGACAATCGACAGTCTATTCCTGGTCTCTCATTGATGATGTTG
ATATATCACAATAATATGTGGATGTTGTGGAGAAGTTTGTTGGTGATTGC
AAGGTTTTTTGTTGCTAATACGGTATGAAGTTGATTATCATTGCATGGTG
GCTAATAGACATAATGTTTGGGTGTTCTTGAGGAGATTGTTGAGTGTTTT
GTTGAGGAGATTGTTGAGTGTTTTGTTGAGATGGATGACTAGTCAATGCT
GGTGTGAGGATTTTCATTCTGCTGTTTGTTGATTATCAATAATTATTTCT
GAAGGGTGCTGATGTTAATGTTGATATTCTTTTAAGAAGCATGTTGTAAA
TGCTGTTGATGTGGTGTTGAGGAATGACTTGTTGCCAAAACTGATATTTC
TGAGGATTCATTTATtatcaataattatttttaaaagatgCTGATACAAA
TGTTGATATTTCTTTAAGAAGTAAAGTGTTGTGGATGTTGTTGAGGATTT
TGTTGTGTGTGATGTTGAGGATGAGCTTGTTGTTGATGTTGGTGTTGCTG
TTGAGGATTTGCAGTCTGTTGTGGTTGCTGTTGTAANGATGTTGGTGTTG
CTGTTGAGGATTTGCAgtctgttgttgttgtggttgctGTTGTAGTTGTT
GTTGATTATTAGGAATTTCCAATTGAGCTATCATTAGTGTGCGTTCAACT
TGTTTAAAAGTCATGTCAAGTCGATTACCAGCCATTTCAACTTCacattg
taaatttttcacAGCTTCAAATACTGAAGTGTCTATATGTAGTTCGTTTG
AAAGATTTAAAAAGTTCGGATGGTCTTTGAATTTTTGTAGAAACATGCTG
AACTGGTTGATGTATTCCCTAGAAGAACGAAAGAAAATTGCTAGAGtgct
cccgtttcatatcaaacacatgtttcatatcgggacagtgtctgcctatt
gttatattgtgc
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00063255-exon-scaffold_385-1491911889:270072..270776 | TCONS_00063255-exon-scaffold_385-1491911889:270072..270776 | Clytia hemisphaerica | exon |
| TCONS_00063255-exon-scaffold_385-1510915933:270072..270776 | TCONS_00063255-exon-scaffold_385-1510915933:270072..270776 | Clytia hemisphaerica | exon |
| TCONS_00063255-exon-scaffold_385-1575043694:270072..270776 | TCONS_00063255-exon-scaffold_385-1575043694:270072..270776 | Clytia hemisphaerica | exon |
| TCONS_00063255-exon-scaffold_385-1491911889:270909..271433 | TCONS_00063255-exon-scaffold_385-1491911889:270909..271433 | Clytia hemisphaerica | exon |
| TCONS_00063255-exon-scaffold_385-1510915933:270909..271433 | TCONS_00063255-exon-scaffold_385-1510915933:270909..271433 | Clytia hemisphaerica | exon |
| TCONS_00063255-exon-scaffold_385-1575043694:270909..271433 | TCONS_00063255-exon-scaffold_385-1575043694:270909..271433 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_385 | supercontig | scaffold_385:270072..271433 + |
Blast
The following BLAST results are available for this feature:
|
