TCONS_00063264 (transcript) - C. hemisphaerica

Overview
NameTCONS_00063264
Unique NameTCONS_00063264
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1072

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00063264 ID=TCONS_00063264|Name=TCONS_00063264|organism=Clytia hemisphaerica|type=transcript|length=1072bp
AAGTAATCCTCgaacaaaagaaaaacctttCCTAAAGACAAGGTTTGGTT
GATTGGAGCGAGCAGTGGATGCAAGGAAACATCAAACACAAAGAAACTGC
TGAAAAATGCCTTCCATGATAAAAGGTAGAGAGACTATAATATTTGAAAG
GACGGGACAAGCACCTTCTCCTTCAAAAGATTTCCACCAACTTATTGTCA
CTGAGGGAAATGTGATTTGGAGAACATGGAGAGTATCTTTGAGGAAAGAG
CAAATGGGGATACCACCTTCTCAAAACAAGCAAAGTTACGAAGACTTCTT
CTATGACACTGTAGTACCTAACGATATCAAAAGAATTTTAGGAGAGCAAG
TGCTTATTTATGTCCAGTGCATCGTTCATAAAGATTGGCTTTACAGAATG
AAAGATAACATATTGATCAAGATTTTTAGTGGTCTTGAACTCAGCGACGT
CATGTCACTATCTCAAGTTTGCCGTCATTTTCGTATTGTTTGTCAAAGTA
ATGAACTATGGAGAAACATTTATATTAATCACTACTGCAGCAACATGAAT
GAAGATATCAAACAACTGGGTAATAAAATTGGTTGGAAAAAGACATTTTT
CACTGACAAACTTCAACTTCAAAAGAAAGCATCGCGTATGAGAAAAAGTA
gtggaaaaataaaatcaagtgCAGTCCCTGACGAGAGGGTCTTAACAGTT
TTATAAAATCGGACTTATTTAACAAAACTTCATTATATATAGAGTCTAAT
CTTCAAACACAAAGATGGCATGATCATAAATAATAAACATACAATGTAAA
TTGGTATACAGTTTTGAAAAGTTAATAATGGTTTgtgtaaaaatatttgt
aaatatGAAAGTAAAGAACTCATTCATTatattctatttttattttcaaa
gtttgaaagaaaatataacatcatcaaatttaatctttttctTATTCAGT
TGTAATAATTTCTGGGAAATTTCTTTCCTTTCGAATTCTTTACTTGATCT
ACAGTATCATTAATTGGTTAATTGtcattctttatgaaatttgaaggTTT
CATATGTCAGTGAGATTAGAAG
Run BLAST on NCBI

protein sequence of TCONS_00063264-protein

>TCONS_00063264-protein ID=TCONS_00063264-protein|Name=TCONS_00063264-protein|organism=Clytia hemisphaerica|type=polypeptide|length=199bp
MPSMIKGRETIIFERTGQAPSPSKDFHQLIVTEGNVIWRTWRVSLRKEQM
GIPPSQNKQSYEDFFYDTVVPNDIKRILGEQVLIYVQCIVHKDWLYRMKD
NILIKIFSGLELSDVMSLSQVCRHFRIVCQSNELWRNIYINHYCSNMNED
IKQLGNKIGWKKTFFTDKLQLQKKASRMRKSSGKIKSSAVPDERVLTVL
Run BLAST on NCBI

transcript from alignment at scaffold_385:556234..557627+

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00063264 ID=TCONS_00063264|Name=TCONS_00063264|organism=Clytia hemisphaerica|type=transcript|length=1394bp|location=Sequence derived from alignment at scaffold_385:556234..557627+ (Clytia hemisphaerica)
AAGTAATCCTCgaacaaaagaaaaacctttCCTAAAGGTTGGTATACATT
GTCCCTCATATTCCTTAAAAACGtatctatttattttttaatttaaactt
tatcaatttttgcattttctgtCAAATAAGATAAATAGAAAACGATTTTC
AAAACCTCTCAAACCTTTTTAGCACTCAGGtttataaaaaagaattcaCT
CCTACATGTAGACAGGGCATTATGTGAGATGTTACCTACGTCAcggaatt
ttgttttgatttcattcgAAATCCAAAATGGTAGCTTTTGATCGCGCGAT
TGATTGATTAGTCTTTTTCGCGTCTTTTCATGTGAGAAATCACGTCTTGT
TTTGTGTAGACAAGGTTTGGTTGATTGGAGCGAGCAGTGGATGCAAGGAA
ACATCAAACACAAAGAAACTGCTGAAAAATGCCTTCCATGATAAAAGGTA
GAGAGACTATAATATTTGAAAGGACGGGACAAGCACCTTCTCCTTCAAAA
GATTTCCACCAACTTATTGTCACTGAGGGAAATGTGATTTGGAGAACATG
GAGAGTATCTTTGAGGAAAGAGCAAATGGGGATACCACCTTCTCAAAACA
AGCAAAGTTACGAAGACTTCTTCTATGACACTGTAGTACCTAACGATATC
AAAAGAATTTTAGGAGAGCAAGTGCTTATTTATGTCCAGTGCATCGTTCA
TAAAGATTGGCTTTACAGAATGAAAGATAACATATTGATCAAGATTTTTA
GTGGTCTTGAACTCAGCGACGTCATGTCACTATCTCAAGTTTGCCGTCAT
TTTCGTATTGTTTGTCAAAGTAATGAACTATGGAGAAACATTTATATTAA
TCACTACTGCAGCAACATGAATGAAGATATCAAACAACTGGGTAATAAAA
TTGGTTGGAAAAAGACATTTTTCACTGACAAACTTCAACTTCAAAAGAAA
GCATCGCGTATGAGAAAAAGTAgtggaaaaataaaatcaagtgCAGTCCC
TGACGAGAGGGTCTTAACAGTTTTATAAAATCGGACTTATTTAACAAAAC
TTCATTATATATAGAGTCTAATCTTCAAACACAAAGATGGCATGATCATA
AATAATAAACATACAATGTAAATTGGTATACAGTTTTGAAAAGTTAATAA
TGGTTTgtgtaaaaatatttgtaaatatGAAAGTAAAGAACTCATTCATT
atattctatttttattttcaaagtttgaaagaaaatataacatcatcaaa
tttaatctttttctTATTCAGTTGTAATAATTTCTGGGAAATTTCTTTCC
TTTCGAATTCTTTACTTGATCTACAGTATCATTAATTGGTTAATTGtcat
tctttatgaaatttgaaggTTTCATATGTCAGTGAGATTAGAAG

Coding sequence (CDS) from alignment at scaffold_385:556234..557627+

>TCONS_00063264 ID=TCONS_00063264|Name=TCONS_00063264|organism=Clytia hemisphaerica|type=CDS|length=600bp|location=Sequence derived from alignment at scaffold_385:556234..557627+ (Clytia hemisphaerica)
ATGCCTTCCATGATAAAAGGTAGAGAGACTATAATATTTGAAAGGACGGG
ACAAGCACCTTCTCCTTCAAAAGATTTCCACCAACTTATTGTCACTGAGG
GAAATGTGATTTGGAGAACATGGAGAGTATCTTTGAGGAAAGAGCAAATG
GGGATACCACCTTCTCAAAACAAGCAAAGTTACGAAGACTTCTTCTATGA
CACTGTAGTACCTAACGATATCAAAAGAATTTTAGGAGAGCAAGTGCTTA
TTTATGTCCAGTGCATCGTTCATAAAGATTGGCTTTACAGAATGAAAGAT
AACATATTGATCAAGATTTTTAGTGGTCTTGAACTCAGCGACGTCATGTC
ACTATCTCAAGTTTGCCGTCATTTTCGTATTGTTTGTCAAAGTAATGAAC
TATGGAGAAACATTTATATTAATCACTACTGCAGCAACATGAATGAAGAT
ATCAAACAACTGGGTAATAAAATTGGTTGGAAAAAGACATTTTTCACTGA
CAAACTTCAACTTCAAAAGAAAGCATCGCGTATGAGAAAAAGTAgtggaa
aaataaaatcaagtgCAGTCCCTGACGAGAGGGTCTTAACAGTTTTATAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_039647XLOC_039647Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00063264-proteinTCONS_00063264-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00063264-exon-scaffold_385-1491911889:556234..556270TCONS_00063264-exon-scaffold_385-1491911889:556234..556270Clytia hemisphaericaexon
TCONS_00063264-exon-scaffold_385-1510915933:556234..556270TCONS_00063264-exon-scaffold_385-1510915933:556234..556270Clytia hemisphaericaexon
TCONS_00063264-exon-scaffold_385-1575043694:556234..556270TCONS_00063264-exon-scaffold_385-1575043694:556234..556270Clytia hemisphaericaexon
TCONS_00063264-exon-scaffold_385-1491911889:556593..557627TCONS_00063264-exon-scaffold_385-1491911889:556593..557627Clytia hemisphaericaexon
TCONS_00063264-exon-scaffold_385-1510915933:556593..557627TCONS_00063264-exon-scaffold_385-1510915933:556593..557627Clytia hemisphaericaexon
TCONS_00063264-exon-scaffold_385-1575043694:556593..557627TCONS_00063264-exon-scaffold_385-1575043694:556593..557627Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_385supercontigscaffold_385:556234..557627 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
77.9509	74.1087	0	0.0895871	74.6251	39.4695	6.26416	1.59668	32.0969	9.82207	8.55514	22.8323	0.0471905	0	0	0	0	0	0	0	0	0	0.465735	0	78.6638	64.9178	0	0	0	0
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR001810F-box_dom
Vocabulary: Molecular Function
TermDefinition
GO:0005515protein binding
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Category Term Accession Term Name
molecular_function GO:0005515 protein binding
Blast
[Close]
BLAST of TCONS_00063264 vs. Swiss-Prot (Human)
Match: FBX36 (F-box only protein 36 OS=Homo sapiens GN=FBXO36 PE=2 SV=2)

HSP 1 Score: 134.42 bits (337), Expect = 4.390e-37
Identity = 64/177 (36.16%), Postives = 104/177 (58.76%), Query Frame = 2 
Query:  140 IFERTGQAPSPSKDFHQLIVTEGNVIWRTWRVSLRKEQMGIPPSQNKQSYEDFFYDTVVPNDIKRILGEQVLIYV--QCIVHKDWLYRMKDNILIKIFSGLELSDVMSLSQVCRHFRIVCQSNELWRNIYINHYCSNMNEDIKQLGNKIGWKKTFFTDKLQLQKKASRMRKSSGKIK 664
            +FE  GQ P PSKD++QL+VT   VI+R W++SLR E     P + K+++EDF  ++ +      I G ++L YV   C    D+L R+ D++L+ I S L+L D+  L Q    F  +C S++LW  I +   C  +  D++ L    GW++ FFT+KLQLQ++  + ++  G ++
Sbjct:    9 LFETVGQGPPPSKDYYQLLVTRSQVIFRWWKISLRSEYRSTKPGEAKETHEDFLENSHLQGQTALIFGARILDYVINLCKGKFDFLERLSDDLLLTIISYLDLEDIARLCQTSHRFAKLCMSDKLWEQI-VQSTCDTITPDVRALAEDTGWRQLFFTNKLQLQRQLRKRKQKYGNLR 184
The following BLAST results are available for this feature:
BLAST of TCONS_00063264 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
FBX364.390e-3736.16F-box only protein 36 OS=Homo sapiens GN=FBXO36 PE... [more]
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