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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00063285 ID=TCONS_00063285|Name=TCONS_00063285|organism=Clytia hemisphaerica|type=transcript|length=647bp
CGCTACTTGAAGTGGTTTGCCAAAGGTTACTACACCGAGAAGAAAAGGTC
TTATCATGTATTGAGGAAAATCCACACCTATCACACATTGCGTCCACAAA
ATACCATCATCAGCATACAATAAACAGTCAAAAACAATTGGACGGTAACA
AATCTCTTCAGACAAGTCCGCCCATACAAAGAAGGCGGAGAGGCAGGGCA
GTAACTAACCAATCAGAGAATGCAACTGATTCGCCAAACCGAAACAAACG
TTATACTTTCCCAGCATCTCAATACTTGACACATCAAAGCTATCTACTAC
AAAAATGGACAAACAGGCAAAATGATAAGATAGctccaaatattttgaaa
aaaaaacgaggTTACGCATCACAAGAAAGCATGGAAGTTCAAGGAAAATC
ATCAGATACCTCAATAGCTCAATTATACAACGTACAAGGTAGAAGTCAAG
CCATCTTCAATGAAGGTCTAAGTAATTCCAGTATTTACCGAGATCCCTCT
TGTTGTAAATGGAATGCCCAACATTGTAAATGTTCCACCAGAAATATCGT
TGAGTGGACTACAGTTTATAGAAGTGAAAAATGTGAAAGATTTATAGTGG
AGGAAAGAAATGAGGTACCAACACAGAATGATGATGGTTTCCAACAA Run BLAST on NCBI protein sequence of TCONS_00063285-protein >TCONS_00063285-protein ID=TCONS_00063285-protein|Name=TCONS_00063285-protein|organism=Clytia hemisphaerica|type=polypeptide|length=215bp
LLEVVCQRLLHREEKVLSCIEENPHLSHIASTKYHHQHTINSQKQLDGNK
SLQTSPPIQRRRRGRAVTNQSENATDSPNRNKRYTFPASQYLTHQSYLLQ
KWTNRQNDKIAPNILKKKRGYASQESMEVQGKSSDTSIAQLYNVQGRSQA
IFNEGLSNSSIYRDPSCCKWNAQHCKCSTRNIVEWTTVYRSEKCERFIVE
ERNEVPTQNDDGFQQ Run BLAST on NCBI transcript from alignment at scaffold_385:370786..372455- Legend: exonfive_prime_UTRCDS Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00063285 ID=TCONS_00063285|Name=TCONS_00063285|organism=Clytia hemisphaerica|type=transcript|length=1670bp|location=Sequence derived from alignment at scaffold_385:370786..372455- (Clytia hemisphaerica)
CGCTACTTGAAGTGGTTTGCCAAAGGTTACTACACCGAGAAGAAAAGGTA
ATATATTCCATTGTTTCATTGGAGGGGGCTCTTCCAGAATATCTTTGTAC
ATGAGGGTGGAAGATATACTGGATATTTTGTCCGGGGGTAGTGAAAAATC
TGCAAAATTTGCCTTGTTTTAGGGGCAAACTTGCTCTGATTAGGGGTGAT
TTTGAAAGTCCGGGGGTGAGATCCGTTGTCCGGAGGGTCAAAATTCACAA
TATCCGGGGTGTAAATTTCCAAAAAATGGTATATCCTCCACCCCCCATAT
TAATTTTTTTTCTGGAAGAGCCCAAGCTGTGAAAGAAACCCTAACTCATG
ACAACTCCAACTTCCCATATAGTCTCGCGTCGCCTATATAGGAAGAATGA
CCGCACACTGTAGGATAAGGAAATCATAGCGTGTTACAGATACCGTCGAC
CCTGTAATCGCGACACAACAGAGCCATGACGTATTGGTGACCTTAGCGAT
TGATCTCGTGAGTGCTTATTCATTGGAGCTACTCGACCACCCCAGATGCA
ATGTCTGAAATACCTCTTTAAACTTATACAAAAGAAGTGTCCCAATTCCA
CTCACATGGTATGGGTAACCCAGATGAAGGTAGATTCACTTGTCAATTGA
ACCGCAGTACCGAGTATTAATCGAAACCTGGCATCCAGTGTGAAAGTCGA
GAACGATAGAACCATTATACCTGCTTAAATATCCCTTTAGTTAGATCTAG
TTTCAATGCATTCCAACGATATATGATATGACCATATTTGCAGGGATGAC
CTCTAAGCCAAAATTTTCTTGATGACGTCATCATGAATTGGCCCAAAATT
TGGCAAAAAAGGGGAAATTTGAGTGGTTCCCGGGCTAAAATCGTTACGTA
AGGTCCAAAGTTAGCCTGTGCCAAATTTCATACTTTTAGCCAAATATGCA
CAATTCCATCAAAATTATGCACCATTGGCTTCTACTATAAAGATAAATCC
CGGCAGACCAACCGAGAGAGCATAATCCCTGATTATTTTAGTCAAATTCA
TTCTTTTTTCCATCGAATAGGTCTTATCATGTATTGAGGAAAATCCACAC
CTATCACACATTGCGTCCACAAAATACCATCATCAGCATACAATAAACAG
TCAAAAACAATTGGACGGTAACAAATCTCTTCAGACAAGTCCGCCCATAC
AAAGAAGGCGGAGAGGCAGGGCAGTAACTAACCAATCAGAGAATGCAACT
GATTCGCCAAACCGAAACAAACGTTATACTTTCCCAGCATCTCAATACTT
GACACATCAAAGCTATCTACTACAAAAATGGACAAACAGGCAAAATGATA
AGATAGCTCCAAATATTTTGAAAAAAAAACGAGGTTACGCATCACAAGAA
AGCATGGAAGTTCAAGGAAAATCATCAGATACCTCAATAGCTCAATTATA
CAACGTACAAGGTAGAAGTCAAGCCATCTTCAATGAAGGTCTAAGTAATT
CCAGTATTTACCGAGATCCCTCTTGTTGTAAATGGAATGCCCAACATTGT
AAATGTTCCACCAGAAATATCGTTGAGTGGACTACAGTTTATAGAAGTGA
AAAATGTGAAAGATTTATAGTGGAGGAAAGAAATGAGGTACCAACACAGA
ATGATGATGGTTTCCAACAA Coding sequence (CDS) from alignment at scaffold_385:370786..372455- >TCONS_00063285 ID=TCONS_00063285|Name=TCONS_00063285|organism=Clytia hemisphaerica|type=CDS|length=1290bp|location=Sequence derived from alignment at scaffold_385:370786..372455- (Clytia hemisphaerica)
GTCTTATCATGTATTGAGGAAAATCCACACCTATCACACATTGCGTCCAC
AAAATACCATCATCAGCATACAATAAACAGTCAAAAACAATTGGACGGTA
ACAAATCTCTTCAGACAAGTCCGCCCATACAAAGAAGGCGGAGAGGCAGG
GCAGTAACTAACCAATCAGAGAATGCAACTGATTCGCCAAACCGAAACAA
ACGTTATACTTTCCCAGCATCTCAATACTTGACACATCAAAGCTATCTAC
TACAAAAATGGACAAACAGGCAAAATGATAAGATAGCTCCAAATATTTTG
AAAAAAAAACGAGGTTACGCATCACAAGAAAGCATGGAAGTTCAAGGAAA
ATCATCAGATACCTCAATAGCTCAATTATACAACGTACAAGGTAGAAGTC
AAGCCATCTTCAATGAAGGTCTAAGTAATTCCAGTATTTACCGAGATCCC
TCTTGTTGTAAATGGAATGCCCAACATTGTAAATGTTCCACCAGAAATAT
CGTTGAGTGGACTACAGTTTATAGAAGTGAAAAATGTGAAAGATTTATAG
TGGAGGAAAGAAATGAGGTACCAACACAGAATGATGATGGTTTCCAACAA
CTACTTGAAGTGGTTTGCCAAAGGTTACTACACCGAGAAGAAAAGGTCTT
ATCATGTATTGAGGAAAATCCACACCTATCACACATTGCGTCCACAAAAT
ACCATCATCAGCATACAATAAACAGTCAAAAACAATTGGACGGTAACAAA
TCTCTTCAGACAAGTCCGCCCATACAAAGAAGGCGGAGAGGCAGGGCAGT
AACTAACCAATCAGAGAATGCAACTGATTCGCCAAACCGAAACAAACGTT
ATACTTTCCCAGCATCTCAATACTTGACACATCAAAGCTATCTACTACAA
AAATGGACAAACAGGCAAAATGATAAGATAGCTCCAAATATTTTGAAAAA
AAAACGAGGTTACGCATCACAAGAAAGCATGGAAGTTCAAGGAAAATCAT
CAGATACCTCAATAGCTCAATTATACAACGTACAAGGTAGAAGTCAAGCC
ATCTTCAATGAAGGTCTAAGTAATTCCAGTATTTACCGAGATCCCTCTTG
TTGTAAATGGAATGCCCAACATTGTAAATGTTCCACCAGAAATATCGTTG
AGTGGACTACAGTTTATAGAAGTGAAAAATGTGAAAGATTTATAGTGGAG
GAAAGAAATGAGGTACCAACACAGAATGATGATGGTTTCCAACAACTACT
TGAAGTGGTTTGCCAAAGGTTACTACACCGAGAAGAAAAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00063285-exon-scaffold_385-1575043694:372409..372455 | TCONS_00063285-exon-scaffold_385-1575043694:372409..372455 | Clytia hemisphaerica | exon |
| TCONS_00063285-exon-scaffold_385-1575043694:370786..371385 | TCONS_00063285-exon-scaffold_385-1575043694:370786..371385 | Clytia hemisphaerica | exon |
| TCONS_00063285-exon-scaffold_385-1510915933:372409..372455 | TCONS_00063285-exon-scaffold_385-1510915933:372409..372455 | Clytia hemisphaerica | exon |
| TCONS_00063285-exon-scaffold_385-1510915933:370786..371385 | TCONS_00063285-exon-scaffold_385-1510915933:370786..371385 | Clytia hemisphaerica | exon |
| TCONS_00063285-exon-scaffold_385-1491911889:372409..372455 | TCONS_00063285-exon-scaffold_385-1491911889:372409..372455 | Clytia hemisphaerica | exon |
| TCONS_00063285-exon-scaffold_385-1491911889:370786..371385 | TCONS_00063285-exon-scaffold_385-1491911889:370786..371385 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_385 | supercontig | scaffold_385:370786..372455 - |
Blast
The following BLAST results are available for this feature:
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