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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00063286 ID=TCONS_00063286|Name=TCONS_00063286|organism=Clytia hemisphaerica|type=transcript|length=1209bp
tTAATTTGCAAGTTGTCAGTACAAAGAATATGCGGGCAAAAGTTATTTGC
GTATTTTCGGACACGATGAAAAAATTCTGGTCAATTTTGGCCATTCTTGG
TTTTTTCATTGCCACGTGTTTTTCGCATATGCTAAAACTAAACGAATGCG
GTAATTATGATGGTATATTTTCCAAGATAAAGTACGATCAACGACTAATC
GGTGATATATTAAATGTTATCGGAGCAATCACATTAAGAgggtgtttaac
aaaatgtctTTATCACCCCATATGCTTAAGTGTGAATTATAGAAGGGCGA
ATTTAACATGTGAGTTATTGGGCGTGGCAATTCAAGTGTTCAACCCAACA
AAGAATGACACCCTTATCTCAGCTGCTGGGTGGAATCATTTTGAAACTGA
TTATACAATAAAACAGTTGGGACGTCGGTGTACTGCAAACAACCCGCCAT
GCTCTGAATACGAAATATGTGAAGATATTTGTGGAGCACCAGGTTATCAA
TGTGTAAAACGAACACTACGTCACACAATTGCAGAATATTCAGCAGTATC
AGAATTAGCTGGACATGAAGCAATATATGCATTTGATGGTAACGAATATA
GGATCTACCATTCTCAAGGCAGTACAGATGGTAATTTTTGGATTAAAGCT
ACCTTTGGCAAACGTGTTTTTATAACTGCTGTTGAGGTCGTTAACCGATT
AATTCACTTGGGACAAGTATACGAGAATCGAAATGATAATATTGACTTGA
GAACAATTTTACATGAAGGAGATGAAACCATTGATAATGTCTTTGGTAAT
ACAGGAGATCTAGGGGAAAGAATAATTATCCCTTGCAATCGATTGGCTGA
CGAGTTACTTGCTTACCAATCAAAAGAGGTTACGATTGGGATCATTCAAA
TTGGTGAGATCTGGGTCTATGGTAAAGTCCCTTTCGAATGAATCCTCAAA
GTAGGTTTCCTGAGTGTCTTGGTTAACAAGGTTGCTATCGACTACGAGCA
TAAGATTAACTGAAATTtcctggttcttataaaaaaagtgtgcaCGCATA
ATCACAAGAAAATACTTTCCGTGCCACAAGGAAATAACTTTAAGTAAAAT
CCAGCCATTGAAGAAATCAATGCAAAAAGACACACTGCAAAAAGTttggt
tttgccaatttttttcctGTACTTCAAAGATCCGGCTTCAAAGGGTCAAT
CAGAGGCAA Run BLAST on NCBI protein sequence of TCONS_00063286-protein >TCONS_00063286-protein ID=TCONS_00063286-protein|Name=TCONS_00063286-protein|organism=Clytia hemisphaerica|type=polypeptide|length=312bp
NLQVVSTKNMRAKVICVFSDTMKKFWSILAILGFFIATCFSHMLKLNECG
NYDGIFSKIKYDQRLIGDILNVIGAITLRGCLTKCLYHPICLSVNYRRAN
LTCELLGVAIQVFNPTKNDTLISAAGWNHFETDYTIKQLGRRCTANNPPC
SEYEICEDICGAPGYQCVKRTLRHTIAEYSAVSELAGHEAIYAFDGNEYR
IYHSQGSTDGNFWIKATFGKRVFITAVEVVNRLIHLGQVYENRNDNIDLR
TILHEGDETIDNVFGNTGDLGERIIIPCNRLADELLAYQSKEVTIGIIQI
GEIWVYGKVPFE Run BLAST on NCBI transcript from alignment at scaffold_385:393018..398376- Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00063286 ID=TCONS_00063286|Name=TCONS_00063286|organism=Clytia hemisphaerica|type=transcript|length=5359bp|location=Sequence derived from alignment at scaffold_385:393018..398376- (Clytia hemisphaerica)
TTAATTTGCAAGTTGTCAGTACAAAGAATATGCGGGCAAAAGTTATTTGC
GTATTTTCGGACACGATGAAAAAATTCTGGTCAATTTTGGCCATTCTTGG
TTTTTTCATTGCCACGTGTTTTTCGCATATGCTAAAACTAAACGAATGCG
GTAATTATGATGGTATATTTTCCAAGATAAAGTACGATCAACGACTAATC
GGTGATATATTAAATGTTATCGGAGCAATCACATTAAGAGGGTGTTTAAC
AAAATGTCTTTATCACCCCATATGCTTAAGTGTGAATTATAGAAGGGCGA
ATTTAACATGTGAGTTATTGGGCGTGGCAATTCAAGTGTTCAACCCAACA
AAGAATGACACCCTTATCTCAGCTGCTGGGTGGAATCATTTTGAAACTGA
TTATACAATAAAACAGGTAAAAATACGAACTTTTTACTTTTCTTTAAACC
AGCCCTATCTCACCGACCGAGAGTGAAATATGGTGGGAGAGGGCATCCTC
ATGTAATCCAAAGCCTTAAAGGTTTTCTTTTACATAAGTGTTTCCGTTTT
TATACTGAAATATAAATAGATAGGAGGGACAATGAGCCGACCAATCTTAG
TTTATTTGAGGAAGAATTTAGAATTAAAGAAAAAACTGTAAGCACCCTTT
TTTTATAAGAATGGTGTTTTTCCATTTCATCATGGAGGGAAAATCATCAA
AAAATATTCATACGATATTGTTAGATTAGGATCCAAATTCAACTTAGATT
CAGCATGTTAGACATGTTATACATAAATGTAGGATAAATTTGAATTCTTG
TGAAAGTTTTGTGCCTTACTGGGGGTTAGTTGATAATTTACAGTTAAAAG
TGCTCTCAAAATTGTATTATAAAATTTTACCCCCGCTATTAAGGATATTG
ATTTTTCGAAGTATCGAACCCCCTGGATCCTACTTTATTAGTATCGAACC
CCCTGGATATCCACTCTTTAAAATATGCTCAACCCCCTGGATATCCTCTA
TTATAAAATGCTAACCCCTGGATATCGTATTTTTTACTTGAAAAGATATT
TTAATTATAACTTAATGTTTTAACTTTCATTTAGTTGGGACGTCGGTGTA
CTGCAAACAACCCGCCATGCTCTGAATACGAAATATGTGAAGATATTTGT
GGAGCACCAGGTTATCAATGTGTAAAACGTAAGCTACCTATTTTTCAAAC
ACAAAGGTGGCCCCGGACAAGGATTGTATCTATACTCTTAGGTGCCAAAT
AAACGGGGGGGGGGGGGGGGGGGGANNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNCCTTATAAGGTCCGGGGGGTTGGAAAATTTTCGAAAAATTAACAA
GCGGGGGGGGGCCTTTATTTGGCACCTAAGAGTAAGTGAAAAGGGCAAAC
CTCAAAATTTTAAAATAACAAAGTAATTTTCGCTAGAACAGCTTAAAAAA
ACTTAAAAAGCTCTACTTCTATTTAAACCCTATGTCTTCTCAGACAAACT
TATATAAGCTATGATATCACACACAGTTAAAAAATGCATCAAAAAATTTG
ACAGTACAGTAGACACATTTTGATACATTGTTGAAAAGGTAATCTTAAGT
GGAGGATTTTACTAGTTGTTCTTTTGGGGAAATTTTTAAGTTTCGCTGAT
TTCAAATACATGTTTTTTTATAAGCAACTGTATGTCCATAACTAGTCATA
GCTTTCACTAAATGCCCCCACAGAAAGGTCATGTCGTGCACTTATAAAGC
TTTCAAAATTAAAGCATCAAAAATTATCAGTAATAATTGATTAATTTAAT
TATTTATTGATTGATTGAAAAAAAATCATATTCCATTAACAAAATACTTG
AAGAATTCCTGCAGCTTGACAATTTAACAAAATTCAAGGAAAAGCTGGAA
AAGCTTCTCAAAAAGATATTTCGAAAATCATGGTATCATTATCTTACTGA
CTTTCGCATCTCCTTGTTTGTTTGTTTTTTCTTACAACAATATATGTCAT
GATCATTCACTAAATAGACCTTTTCCGATAATGCGCTGCAGACATCTTAG
ATTGTAGGCAAAATATATAGCGGTGAATAAATCAACAAAGAAACCAATCA
GAAATAGCTTGTTTATTTTTCATTGGCTGCTATATATTTCAACAATTCTC
TATTGCTACTTTGCCTAATAAACAATAGTAAGATGATAAGATGATACTGC
GTATAAAATTTATCAAAAAGTTCTGCGCCATCTGAAATAGACCAATACTA
GTTAAGGCCCGGGCTCCACTTGCGTACGCTGTGATTGCAGTCAAAAGAAA
AATAAAGAAACGTCATTGTGGTCCATTCAGACGTACAGTCGAAAAGTTGA
AATGTGCCTAATTTTTTTTCAAGTGCATATATAGTACTTTTTCATAATGC
AATCTTTTCTCCAAGCTGAAAGGATTGAAGCCATTAAGATATGATTGCAG
CGCAGACAATGAAGAGACAGGCCTTCAGGAAACTAGACTAATCTTTTGAG
ATTTTAGCTATATACTCTCACTTTATGGTGTTCCTGTATGACTGTCTGTG
TGCCTAGTCTAACCACCGTTAAATGCCTTAACTTGGAAAGCTAGAATTGG
AGCTTTTTCACCAAACCCCGAGAGCGTAAGTTATTTAGGCTATGGGGCCA
TCAATATAGTACGTACGCAGTGAAGAGGGGAGAGGGGAGTTTAGCAAAAG
CGTACATCTATTGTTTAAATGACATCATTTCTATTGTTCTCTGCGTACAA
GGGGGGAGGGGGTATCAAATTTTTGGAAAATCTTTGCGTACATACTATAT
GGACGACCCCTATCACAACTGCATGAAAAAGTGGAACGTGCGCATGCAAA
GTTAAAGGAATGTAAGCAAACTTTTTTCAGGTTTTTAAAATAGATTTACC
ACACTGAACAAACAGTGAAAACACTCTAAGTGAGGTAAATCTATTTTGAA
GACCAAAAAAAAAAATATTGGTTGACATTCAACACATTCAACCACTTTTG
GATTCAACTTTACTTATGTGTACATTCAACTTTTTTGTACTTTGCCGGTA
TCTTGTTTTATCAAGTTAAGAAGGACTTTCTCGAGTTACGACCATATGAT
GGTCTTTAAAGCTTAAGAAGCTCTATAAACAATAAAGCTAGTTATTAATA
TAATAACAGACAGAGATAAATTACAGTTTGAGCAAAGATATCAAATGTAC
ATTTGAAAACTTGAGCAAACTTCTTTAAAGATTCCAGAAAAAGAATTGAA
ATCATAGCTGAAATGAACTTCTGACTAAATTACAGTATATAGTATTCAGT
TTCAAAGACAAGAAACAAAATTTGACGTACAAAACACTTTTTCCAATCAA
TGAATCAGCTCACCATCATAACCAGTCTGCCATTTTGTTTGTTTTGATTT
GCACAAGTAACATGGCGTTCTAGACAAGTAATATTGTATTTCGTGTTATG
GTGTAATCACTATGCTTTTTCTATAATTTGCATTTATAACACTCGCTTCA
GCTTTTCAATGATAAATCAAAACTAATAAAATGTAATACGCAATAATGGT
AATAGCATAAAACGTAATATGAAAATATGTATAACATTTACCGCTGTATA
AATTACCGCCATATTTTTGCGGAACACTTAATTGGCCGGAAAGCCGATTA
CGACGCAAAAACAAAAACAATTCGCAAAGAATCGAGATTCCAGTCCAATN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAATAACATG
TATGTATTCAGATATTTTATACCTTTCTTGGACGAAAAGTTTTCAAGGTC
CATTTTGATATTGAAACACTTCAAAGTATTAATAATATTCATGACGTAAT
GATTTCTACGGAAATACCCCGGTTTTAGCCAGTAGTGGCAAAAAAAAAGT
TGTATAAAAGTTGCCACTATTGGCAAAAGCCGGGGTCTTTCTGTAGAAAA
CATTACCTCATGAATATCATGAATTACAGAAAAAAGTTTTCATTAAATTA
TAATTTCCAGGAACACTACGTCACACAATTGCAGAATATTCAGCAGTATC
AGAATTAGCTGGACATGAAGCAATATATGCATTTGATGGTAACGAATATA
GGATCTACCATTCTCAAGGCAGTACAGATGGTAATTTTTGGATTAAAGCT
ACCTTTGGCAAACGTGTTTTTATAACTGCTGTTGAGGTCGTTAACCGATT
AATTCACTTGGGACAAGTATACGAGAATCGAAATGATAATATTGACTTGA
GAACAATTTTACATGAAGGAGATGAAACCATTGATAATGTCTTTGGTAAT
ACAGGAGATCTAGGGGAAAGAATAATTATCCCTTGCAATCGATTGGCTGA
CGAGTTACTTGCTTACCAATCAAAAGAGGTTACGATTGGGATCATTCAAA
TTGGTGAGATCTGGGTCTATGGTAAAGTCCCTTTCGAATGAATCCTCAAA
GTAGGTTTCCTGAGTGTCTTGGTTAACAAGGTTGCTATCGACTACGAGCA
TAAGATTAACTGAAATTTCCTGGTTCTTATAAAAAAAGTGTGCACGCATA
ATCACAAGAAAATACTTTCCGTGCCACAAGGAAATAACTTTAAGTAAAAT
CCAGCCATTGAAGAAATCAATGCAAAAAGACACACTGCAAAAAGTTTGGT
TTTGCCAATTTTTTTCCTGTACTTCAAAGATCCGGCTTCAAAGGGTCAAT
CAGAGGCAA Coding sequence (CDS) from alignment at scaffold_385:393018..398376- >TCONS_00063286 ID=TCONS_00063286|Name=TCONS_00063286|organism=Clytia hemisphaerica|type=CDS|length=2817bp|location=Sequence derived from alignment at scaffold_385:393018..398376- (Clytia hemisphaerica)
GAACACTACGTCACACAATTGCAGAATATTCAGCAGTATCAGAATTAGCT
GGACATGAAGCAATATATGCATTTGATGGTAACGAATATAGGATCTACCA
TTCTCAAGGCAGTACAGATGGTAATTTTTGGATTAAAGCTACCTTTGGCA
AACGTGTTTTTATAACTGCTGTTGAGGTCGTTAACCGATTAATTCACTTG
GGACAAGTATACGAGAATCGAAATGATAATATTGACTTGAGAACAATTTT
ACATGAAGGAGATGAAACCATTGATAATGTCTTTGGTAATACAGGAGATC
TAGGGGAAAGAATAATTATCCCTTGCAATCGATTGGCTGACGAGTTACTT
GCTTACCAATCAAAAGAGGTTACGATTGGGATCATTCAAATTGGTGAGAT
CTGGGTCTATGGTAAAGTCCCTTTCGAATGATTGGGACGTCGGTGTACTG
CAAACAACCCGCCATGCTCTGAATACGAAATATGTGAAGATATTTGTGGA
GCACCAGGTTATCAATGTGTAAAACAATTTGCAAGTTGTCAGTACAAAGA
ATATGCGGGCAAAAGTTATTTGCGTATTTTCGGACACGATGAAAAAATTC
TGGTCAATTTTGGCCATTCTTGGTTTTTTCATTGCCACGTGTTTTTCGCA
TATGCTAAAACTAAACGAATGCGGTAATTATGATGGTATATTTTCCAAGA
TAAAGTACGATCAACGACTAATCGGTGATATATTAAATGTTATCGGAGCA
ATCACATTAAGAGGGTGTTTAACAAAATGTCTTTATCACCCCATATGCTT
AAGTGTGAATTATAGAAGGGCGAATTTAACATGTGAGTTATTGGGCGTGG
CAATTCAAGTGTTCAACCCAACAAAGAATGACACCCTTATCTCAGCTGCT
GGGTGGAATCATTTTGAAACTGATTATACAATAAAACAGGAACACTACGT
CACACAATTGCAGAATATTCAGCAGTATCAGAATTAGCTGGACATGAAGC
AATATATGCATTTGATGGTAACGAATATAGGATCTACCATTCTCAAGGCA
GTACAGATGGTAATTTTTGGATTAAAGCTACCTTTGGCAAACGTGTTTTT
ATAACTGCTGTTGAGGTCGTTAACCGATTAATTCACTTGGGACAAGTATA
CGAGAATCGAAATGATAATATTGACTTGAGAACAATTTTACATGAAGGAG
ATGAAACCATTGATAATGTCTTTGGTAATACAGGAGATCTAGGGGAAAGA
ATAATTATCCCTTGCAATCGATTGGCTGACGAGTTACTTGCTTACCAATC
AAAAGAGGTTACGATTGGGATCATTCAAATTGGTGAGATCTGGGTCTATG
GTAAAGTCCCTTTCGAATGATTGGGACGTCGGTGTACTGCAAACAACCCG
CCATGCTCTGAATACGAAATATGTGAAGATATTTGTGGAGCACCAGGTTA
TCAATGTGTAAAACAATTTGCAAGTTGTCAGTACAAAGAATATGCGGGCA
AAAGTTATTTGCGTATTTTCGGACACGATGAAAAAATTCTGGTCAATTTT
GGCCATTCTTGGTTTTTTCATTGCCACGTGTTTTTCGCATATGCTAAAAC
TAAACGAATGCGGTAATTATGATGGTATATTTTCCAAGATAAAGTACGAT
CAACGACTAATCGGTGATATATTAAATGTTATCGGAGCAATCACATTAAG
AGGGTGTTTAACAAAATGTCTTTATCACCCCATATGCTTAAGTGTGAATT
ATAGAAGGGCGAATTTAACATGTGAGTTATTGGGCGTGGCAATTCAAGTG
TTCAACCCAACAAAGAATGACACCCTTATCTCAGCTGCTGGGTGGAATCA
TTTTGAAACTGATTATACAATAAAACAGGAACACTACGTCACACAATTGC
AGAATATTCAGCAGTATCAGAATTAGCTGGACATGAAGCAATATATGCAT
TTGATGGTAACGAATATAGGATCTACCATTCTCAAGGCAGTACAGATGGT
AATTTTTGGATTAAAGCTACCTTTGGCAAACGTGTTTTTATAACTGCTGT
TGAGGTCGTTAACCGATTAATTCACTTGGGACAAGTATACGAGAATCGAA
ATGATAATATTGACTTGAGAACAATTTTACATGAAGGAGATGAAACCATT
GATAATGTCTTTGGTAATACAGGAGATCTAGGGGAAAGAATAATTATCCC
TTGCAATCGATTGGCTGACGAGTTACTTGCTTACCAATCAAAAGAGGTTA
CGATTGGGATCATTCAAATTGGTGAGATCTGGGTCTATGGTAAAGTCCCT
TTCGAATGATTGGGACGTCGGTGTACTGCAAACAACCCGCCATGCTCTGA
ATACGAAATATGTGAAGATATTTGTGGAGCACCAGGTTATCAATGTGTAA
AACAATTTGCAAGTTGTCAGTACAAAGAATATGCGGGCAAAAGTTATTTG
CGTATTTTCGGACACGATGAAAAAATTCTGGTCAATTTTGGCCATTCTTG
GTTTTTTCATTGCCACGTGTTTTTCGCATATGCTAAAACTAAACGAATGC
GGTAATTATGATGGTATATTTTCCAAGATAAAGTACGATCAACGACTAAT
CGGTGATATATTAAATGTTATCGGAGCAATCACATTAAGAGGGTGTTTAA
CAAAATGTCTTTATCACCCCATATGCTTAAGTGTGAATTATAGAAGGGCG
AATTTAACATGTGAGTTATTGGGCGTGGCAATTCAAGTGTTCAACCCAAC
AAAGAATGACACCCTTATCTCAGCTGCTGGGTGGAATCATTTTGAAACTG
ATTATACAATAAAACAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00063286-exon-scaffold_385-1575043694:397961..398376 | TCONS_00063286-exon-scaffold_385-1575043694:397961..398376 | Clytia hemisphaerica | exon |
| TCONS_00063286-exon-scaffold_385-1575043694:397199..397292 | TCONS_00063286-exon-scaffold_385-1575043694:397199..397292 | Clytia hemisphaerica | exon |
| TCONS_00063286-exon-scaffold_385-1575043694:393018..393716 | TCONS_00063286-exon-scaffold_385-1575043694:393018..393716 | Clytia hemisphaerica | exon |
| TCONS_00063286-exon-scaffold_385-1510915933:397961..398376 | TCONS_00063286-exon-scaffold_385-1510915933:397961..398376 | Clytia hemisphaerica | exon |
| TCONS_00063286-exon-scaffold_385-1510915933:397199..397292 | TCONS_00063286-exon-scaffold_385-1510915933:397199..397292 | Clytia hemisphaerica | exon |
| TCONS_00063286-exon-scaffold_385-1510915933:393018..393716 | TCONS_00063286-exon-scaffold_385-1510915933:393018..393716 | Clytia hemisphaerica | exon |
| TCONS_00063286-exon-scaffold_385-1491911889:397961..398376 | TCONS_00063286-exon-scaffold_385-1491911889:397961..398376 | Clytia hemisphaerica | exon |
| TCONS_00063286-exon-scaffold_385-1491911889:397199..397292 | TCONS_00063286-exon-scaffold_385-1491911889:397199..397292 | Clytia hemisphaerica | exon |
| TCONS_00063286-exon-scaffold_385-1491911889:393018..393716 | TCONS_00063286-exon-scaffold_385-1491911889:393018..393716 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_385 | supercontig | scaffold_385:393018..398376 - |
Annotated Terms
The following terms have been associated with this transcript:
Blast
The following BLAST results are available for this feature:
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