TCONS_00063293 (transcript) - C. hemisphaerica

Overview
NameTCONS_00063293
Unique NameTCONS_00063293
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length694

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00063293 ID=TCONS_00063293|Name=TCONS_00063293|organism=Clytia hemisphaerica|type=transcript|length=694bp
taaaactcTATAAAAATTAAAGGATCTTTACTTTACGACTTTTAAAACCT
TTTAAAGGTATCAAGCAAAATGTCTGACGATGAACTTTCAGAGAGTGGAG
ATCTAAACATTGGAcactACGAAGGCGATAGAGATGAACTAGAAAGAAGA
CATGGATTTGGGAAAGCATTCTTTCCAAACGGTGACACATACGAGGGTGA
ATATTTGCATGGAAGACGAAATGGAAAGGGGGTCTACCGTTTTGCCAGTG
GAGCTTTTTATAATGGTGACTACATTGATAACAAAAGAGAAGGACGTGGT
ACATTCGTTTATCCCGATGGTTCCAAGTATGACGGAAGGTGGGACCTGGA
CACACGCCATGGTTACGGTATATATGAATACGAGAATGGTGACCGGTACG
AAGGCGAATGGTTCCGTAACCGGAAAACTGGAACTGGGAAATATTTCCAC
AAAGAATCAGAGTCGATTTCCGAAGGTCAATGGGTAGATGGTAAGATGAC
GGGCCAAGGTAGTATTCATTATGGTTATTGCAATTTCCAAGGACGATTTA
ACGCCAATGTTGTCaaaggggttggaaaatttattttcccaAAGAGAAGG
ATTGAAATCAATGGTGTCTACAAGGCATTTCTACTTCCTGGACTCGTCAA
TTGATAATTGCGCCCACAGGCGCCTACAAAGTCAAATCTTTTCG
Run BLAST on NCBI

protein sequence of TCONS_00063293-protein

>TCONS_00063293-protein ID=TCONS_00063293-protein|Name=TCONS_00063293-protein|organism=Clytia hemisphaerica|type=polypeptide|length=194bp
MSDDELSESGDLNIGHYEGDRDELERRHGFGKAFFPNGDTYEGEYLHGRR
NGKGVYRFASGAFYNGDYIDNKREGRGTFVYPDGSKYDGRWDLDTRHGYG
IYEYENGDRYEGEWFRNRKTGTGKYFHKESESISEGQWVDGKMTGQGSIH
YGYCNFQGRFNANVVKGVGKFIFPKRRIEINGVYKAFLLPGLVN
Run BLAST on NCBI

transcript from alignment at scaffold_385:454907..461783-

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00063293 ID=TCONS_00063293|Name=TCONS_00063293|organism=Clytia hemisphaerica|type=transcript|length=6877bp|location=Sequence derived from alignment at scaffold_385:454907..461783- (Clytia hemisphaerica)
TAAAACTCTATAAAAATTAAAGGATCTTTACTTTACGACTTTTAAAACCT
TTTAAAGGTATCAAGCAAAATGTCTGACGATGAACTTTCAGAGAGTGGAG
ATCTAAACATTGGAGTAAGTGTATTCTAAACTGTCCCTCCAGTCGTTAGC
TGAATTTCAGTCCCAACCTCTTCTGGGTTCTGTTAAAAAGTTCATACAAA
AATTGTGTTTTAGTTTCAGTTTTGTTTTGCTTTAGCACTACGAAGGCGAT
AGAGATGAACTAGAAAGAAGACATGGATTTGGGAAAGCATTCTTTCCAAA
CGGTGACACATACGAGGGTGAATATTTGCATGGAAGACGAAATGGAAAGG
TAACATTCGACAATAGCTTATGTACGGACCCGGGATTCGACATTCTGATT
GAGCCCGGGCCCAGGGGAGGGGTACTAGTTTTGCGAGATGTCCGAGCCAA
AGTTCGAAAATCGACCCTTTGACTTTGAGAAACTGAATTTCAAAAGTTTT
CTCCATGTTTTGACGTTTTTTCCACCCTCCGAAAGACTATTTACCCCAAT
AATTGATGACCCTTTCAGTGAGTTGATTTTTGATTTTGGAAATTTTGAGA
ACTATATATACAGAGACGGACTTGCTTTTTAATGGTTTTTGCGGGGTTTT
TGTACCCCTTTGAGGGACTTTTCGAGAGTGTGAACAAGATACCCTTTAGG
TACCCTTTTTTTCTGTTTCTTCAAGGCTTCGTTCGTTCGTTCGTTCGTTC
GTTCGTTCGTTCGTTCGTTCGTTCGTTCGTTCGTTCGTTCGTTCGTCACA
CTTTTTTATCATACTTCAGGGGGTCTACCGTTTTGCCAGTGGAGCTTTTT
ATAATGGTGACTACATTGATAACAAAAGAGAAGGACGTGGTACATTCGTT
TATCCCGATGGTTCCAAGTATGACGGTAAGAATTTCCAGATTATATTTAA
ACTAAAGTCTGTCCAGATATAATTGGCAGTGGAAACAAGAATGCCTGTAA
CCTTTGATAGTCAAATATAATTATGGAAATTTTTTTTGCTTGTTTTAGAG
AANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCACA
GAAAAGTGCTACCAAGGGGTATTTCGGGTCCCATATCTTCCGAAGGACTT
TTCTGTTTGCCTTGAAATTTAACAAACTTCTTAACCTAATGTTGAACTAC
CACTGGTGTAAAAATGAAAGTTATAGCATAAGTAGAAAAAAAGCTCCATT
TTTACAATCGCAAATTTAACCGCTAAAAATCGCGAATTTTTCAACCAAAA
ATACATTCAAATATAGCGCTTATGATTCTCTGAAACAAGCAAAAAAAATT
TCCATAATTATATTTGACTATCAAAGGTTACAGGCATTCTTGTTTCCACT
GCCAATTATATCTAGACAGACTTTAGGTCACAGTGTGGATCTAAACCACA
CTGAAACGACCGCCTTCCTTCACGCATCACGCACGCTCGCGAAAGAGCGC
GCGCACATTGCCAACGCCTACATGTCATCTCCAGTACATTTTAGATTATT
CATTGAAAACAGATTACAATATAGTCATTTTTCACGTCTCGATTATTCAA
TTACGAATAAAAGACATTCAGGGAAAAAAAAGAGAAACACCTGGGTAATC
TAGTTAAAAAAACCGAAAGTAAATGGTAGACAAAGTAATGAGCCAAGGCA
AAACGAGATTAGCGCACCACTATGAAAGAAACCGCCTCCGGCGGTCGAAA
ATCATTATCACCGAGTGAAATTGTAATAGTCTGAGGAAAATTGCAGTAGG
GGACCAATCATTGACGTGATGATTAAATTCTTACCATTTTAGATTCATTT
AAACGTGTTTTTAAAGAACAAACTACATAAAAACACAAGGCTTCAATGGC
CAGGATGTTCAGAACAAGTTCAGAACATTTCGAGGCTTTACAGTCTCCAA
AACACCCAATTTTTAGAAAAATGGACAAAAATATTCACAAAATGGTGAAA
ATAAGAACATTCTAAATACATTTTCTGTCAAGACTTGAAAAACGTTGGAT
GTTCTTATAAAAAAAAACGTGTATTCCAATTTGTTCAACGTTTAAAACCA
AATAAACAACAATTTGCTGATTCAACTTTAAAGCAAGCTTTATTTACAAT
ATAGGAAGGTGGGACCTGGACACACGCCATGGTTACGGTATATATGAATA
CGAGAATGGTGACCGGTACGAAGGCGAATGGTTCCGTAACCGGAAAACTG
GAACTGGGAAATATTTCCACAAAGAATCAGAGTCGATTGTAAGTTCCGTT
ATGATTAACATTCGGTCTTTAATAATGTATTTTACAATGTTAATTATTCA
GTCTACAAAAAATATCTGAACAAGTAGAACTCCTCGCTGGTCTAAAATCA
CTGTCTTGTTTCTCGAAATTGCGAACCATTCAAAAAGCAACTAGAGGGCG
TAAAAGCAGCGAATTCACTGACATCGGAGTGAAAAAGATTTATAGGGGGT
GTTAGGTATGACGGGGACACTAGACGATCCTATCGTCTACATAAGTGACT
AAAAAAGGGAATAATTTATGAGGCAGGATAAATTTGAAAATGGAGTTTAG
CACGGGGTGGAGTAGGCAGTGGCGTAGGTGTAATTACAGCGTTTGTTCCA
AATTCTACCGTCACTATTATTTTTTTCCGTAAACCGCCGTGATGGCAGTA
GACTCTGCGCATGTAATTTTTCCTCGTTTAAGTACTACATGTTTTTTCTT
TCATAAGCATAACGTTTATGAGCATATGCAGGCTCAGTTTTTGGTACCTA
AACAATGGCTCTATTGTTTGAGAACAATAGAACACTAAGCATAATGCGAG
CCTGACATAGGGACAGACACTTGCTTATAAAAAAAACATGTATCCCTCTA
TCATCTACAGGGACCCCCACCATCAATTTTATGGATAACATGGACGATTT
TAATTGAATTTTTATTAATTGCCACCGGAGGAAGCCTAAAGCTTCTGAGG
ATGGCATTCATAGCTTCACGCATAAGGAAGTTGGGCAAACATCTCATCAT
TTTGCGCGCGTTTTTCAGTATTTTAGTTCTGCTTAACGGTAGCATTCTTA
TCTTACGGTCTCTCTATTGTTTTATCATCATCAAAAAGACTTTTCCGGAG
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNTTTTCCGGAGTTATTTTGATCTGATTACTCATTTTGAAATG
TCAGTTTGTCTTTTTCTTATCCCTGGAGAGTTAAATGAATCTAAGGAAAT
TCCCTTTTCTGGGAATTTCCCTTTTTATACCACAAGTAGTTATTAAGCAC
TCTATATAGGTTAAAAATATTACTCTACTCAAAGTATTCAAACGTGTACA
TTAGTAAAATAACATATGAAGAGCAGTATCTTCAGATATATACGCTTTTT
ATAGGAAAAACCAGTAAGTCATATGAATCTGGCTGGGCTGCTCTTAAATT
TATGTGAGTTTTTCAGCCTTAAATGTCAATATTAATTAAAATGGAAACAT
GTACTTCTCAGTAATTTCTGAAATCTGAGGTTCAGATTCTTCTTAATTTG
TTCTTAGGTTTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNACGGATGTCACTCTAAGTAGACTGTAAATCACTCCCTTGACACAT
TTGTTAGCATTTGAAAGAATTTTCTCTCAGATGAGAGGTCACTCTTAACA
AAAAATTATTGTAGGGCTAAGATCATTCCTTTTGAACGCAAATTCAACTC
TTGTGTTCGTTTTTGCTGCGGTGGCACCTTAATGAAAGTTATGGCTAGTG
ATACTTTATAGAGGAGATTTTCATTCAGCAGATGCTACGGTGGACTATGT
ATGCTATAGTTTAAGACGAATCACTATCTAAGAAAAAAGCCCAAAGCCGA
AGAAAATTCGCAAACAGGTGTTTTTTTTGCCGAAAAGAGTTTACAGCCGG
TAGAGTTTGCCGTTTCTACGATACTCTCCCGCCGATTTTTTTTCCTGTAT
ACCGCCATAATGCCATACTGCCATTTTTTCCCGCCTTTACTATACTGTAA
CGGACGATAACATCGTCTAATGCTAGGGTCAATCGGCAAATCAAAAAAAA
AAGAAGAGATTTGAAACTGTTGATGACAATAAGAGGGTTACAACTGGCGG
TTAAATAATGGTGGTGTTTGTTTTATACTTTTAACATCTGATTTCACTTT
TCAGTCCGAAGGTCAATGGGTAGATGGTAAGATGACGGGCCAAGGTAGTA
TTCATTATGGTTATTGCAATTTCCAAGGACGATTTAACGCCAATGTTGTA
AGTTATAACTTTCATGAGTAGATTTTTCATGAGTCATTTTCTCCTACCGA
TGCTAAAATTTTGAAATTGGGACAAAGCAGATTTTTTGTTTCTTCTTTTA
ATAAATAAGATAATTCTTTAGAAAGTTTAGAATATTCAACAGACTGTTTT
CAGCTAAAATGACGCTAGCACCTGCCCACCGGTAGATTTCTTCGGTTTGA
TAAATAAAGGTTTGAGCCATACCCAAGGGGCTCAAGAGCCTACAATTTTT
ATAATTTTCCCTGTTTTATAGGTCAAAGGGGTTGGAAAATTTATTTTCCC
AAAGAGAAGGATTGAAATCAATGGTGTCTACAAGGCATTTCTACTTGTAA
GTATTGATATTTTTTAGTATTCTTAAAATCTTTTCTAGATAGACCTTTTC
ATAAATTACGTCACGAACATCACTTGCCTTGTATTCAAACAATTTTCATG
GTGATTATGTCTCTTGAGACAACAATAAATAATTTTTTTATGAATAGGAA
GTTGTTTTAATAAAATCCACTGGGAGTTAATCACCATGGCAATAATTTCA
AAACGAGGCAAGTGATGTTCGTAACGTAAATTATGAAAAGGTCTATTTGA
GACATAAATCAATCAACAATAATAGAATGGAATTTCCAAGTCATTTCGGA
CGATTGAAAAATTTGTGTATTCGCCCTGTAGAATGAAAAGGAAATGTAGT
ATTGGAAACTTGGCCCGAAAATTAATTTCATTTTTCGGGAGAAAACTAGA
GGTCCAATTTTAAAGCCCTGTGAGATTGTTTTAACTTAAATGATTCTATT
TGAAAGTAAAAATATATTTCAAAGTTGGTATTTTCCACAATAAAAATATG
ATCGATGCTGAGCAAAAAAAAAAATTCTACAACAACTGTAGCTATTCCAA
GGCCCATCTTCATTTCGATCTGACCTCAAATCTTGGTTAGATTACATCGC
ACTAACGGCGAGGTGCGTTTTTTTTATTTTGATGTTGGTTTATACCGTAG
TCCTATGAAATGAAAGATATCAGAACTTCGGAGTCAGAGTCTCCCCCTAC
TTTTTAAGTACAGTCAAATCTCTCTATTATTCGAGTTTTTTTTAAATTTG
AACAAGAAAGCTTAAGCTGCATTCAGGCCCATCAGTTTTTTTGGTAGTGT
CAAAATATTTTTCCGTTGCAGCGTCGCCATGTACAACTTAATTTATTGGA
GTGAATTTTTTCGATTAATAATGAATTAATTAGGTGTTTTAGTTCTTTTG
AGAAAAATATTTCTTACAGTTTAAAAGGAGCGATTTGATCATATTACTCT
GAGGTATTAATTATATATGGTTTATACTTAAGCATCCGCACACAGTAAGT
CAGATAATTTAATTTTTAGCCTGGACTCGTCAATTGATAATTGCGCCCAC
AGGCGCCTACAAAGTCAAATCTTTTCG

Coding sequence (CDS) from alignment at scaffold_385:454907..461783-

>TCONS_00063293 ID=TCONS_00063293|Name=TCONS_00063293|organism=Clytia hemisphaerica|type=CDS|length=4095bp|location=Sequence derived from alignment at scaffold_385:454907..461783- (Clytia hemisphaerica)
CCTGGACTCGTCAATTGAGTCAAAGGGGTTGGAAAATTTATTTTCCCAAA
GAGAAGGATTGAAATCAATGGTGTCTACAAGGCATTTCTACTTTCCGAAG
GTCAATGGGTAGATGGTAAGATGACGGGCCAAGGTAGTATTCATTATGGT
TATTGCAATTTCCAAGGACGATTTAACGCCAATGTTGAAGGTGGGACCTG
GACACACGCCATGGTTACGGTATATATGAATACGAGAATGGTGACCGGTA
CGAAGGCGAATGGTTCCGTAACCGGAAAACTGGAACTGGGAAATATTTCC
ACAAAGAATCAGAGTCGATTGGGGTCTACCGTTTTGCCAGTGGAGCTTTT
TATAATGGTGACTACATTGATAACAAAAGAGAAGGACGTGGTACATTCGT
TTATCCCGATGGTTCCAAGTATGACGCACTACGAAGGCGATAGAGATGAA
CTAGAAAGAAGACATGGATTTGGGAAAGCATTCTTTCCAAACGGTGACAC
ATACGAGGGTGAATATTTGCATGGAAGACGAAATGGAAAGATGTCTGACG
ATGAACTTTCAGAGAGTGGAGATCTAAACATTGGACCTGGACTCGTCAAT
TGAGTCAAAGGGGTTGGAAAATTTATTTTCCCAAAGAGAAGGATTGAAAT
CAATGGTGTCTACAAGGCATTTCTACTTTCCGAAGGTCAATGGGTAGATG
GTAAGATGACGGGCCAAGGTAGTATTCATTATGGTTATTGCAATTTCCAA
GGACGATTTAACGCCAATGTTGAAGGTGGGACCTGGACACACGCCATGGT
TACGGTATATATGAATACGAGAATGGTGACCGGTACGAAGGCGAATGGTT
CCGTAACCGGAAAACTGGAACTGGGAAATATTTCCACAAAGAATCAGAGT
CGATTGGGGTCTACCGTTTTGCCAGTGGAGCTTTTTATAATGGTGACTAC
ATTGATAACAAAAGAGAAGGACGTGGTACATTCGTTTATCCCGATGGTTC
CAAGTATGACGCACTACGAAGGCGATAGAGATGAACTAGAAAGAAGACAT
GGATTTGGGAAAGCATTCTTTCCAAACGGTGACACATACGAGGGTGAATA
TTTGCATGGAAGACGAAATGGAAAGATGTCTGACGATGAACTTTCAGAGA
GTGGAGATCTAAACATTGGACCTGGACTCGTCAATTGAGTCAAAGGGGTT
GGAAAATTTATTTTCCCAAAGAGAAGGATTGAAATCAATGGTGTCTACAA
GGCATTTCTACTTTCCGAAGGTCAATGGGTAGATGGTAAGATGACGGGCC
AAGGTAGTATTCATTATGGTTATTGCAATTTCCAAGGACGATTTAACGCC
AATGTTGAAGGTGGGACCTGGACACACGCCATGGTTACGGTATATATGAA
TACGAGAATGGTGACCGGTACGAAGGCGAATGGTTCCGTAACCGGAAAAC
TGGAACTGGGAAATATTTCCACAAAGAATCAGAGTCGATTGGGGTCTACC
GTTTTGCCAGTGGAGCTTTTTATAATGGTGACTACATTGATAACAAAAGA
GAAGGACGTGGTACATTCGTTTATCCCGATGGTTCCAAGTATGACGCACT
ACGAAGGCGATAGAGATGAACTAGAAAGAAGACATGGATTTGGGAAAGCA
TTCTTTCCAAACGGTGACACATACGAGGGTGAATATTTGCATGGAAGACG
AAATGGAAAGATGTCTGACGATGAACTTTCAGAGAGTGGAGATCTAAACA
TTGGACCTGGACTCGTCAATTGAGTCAAAGGGGTTGGAAAATTTATTTTC
CCAAAGAGAAGGATTGAAATCAATGGTGTCTACAAGGCATTTCTACTTTC
CGAAGGTCAATGGGTAGATGGTAAGATGACGGGCCAAGGTAGTATTCATT
ATGGTTATTGCAATTTCCAAGGACGATTTAACGCCAATGTTGAAGGTGGG
ACCTGGACACACGCCATGGTTACGGTATATATGAATACGAGAATGGTGAC
CGGTACGAAGGCGAATGGTTCCGTAACCGGAAAACTGGAACTGGGAAATA
TTTCCACAAAGAATCAGAGTCGATTGGGGTCTACCGTTTTGCCAGTGGAG
CTTTTTATAATGGTGACTACATTGATAACAAAAGAGAAGGACGTGGTACA
TTCGTTTATCCCGATGGTTCCAAGTATGACGCACTACGAAGGCGATAGAG
ATGAACTAGAAAGAAGACATGGATTTGGGAAAGCATTCTTTCCAAACGGT
GACACATACGAGGGTGAATATTTGCATGGAAGACGAAATGGAAAGATGTC
TGACGATGAACTTTCAGAGAGTGGAGATCTAAACATTGGACCTGGACTCG
TCAATTGAGTCAAAGGGGTTGGAAAATTTATTTTCCCAAAGAGAAGGATT
GAAATCAATGGTGTCTACAAGGCATTTCTACTTTCCGAAGGTCAATGGGT
AGATGGTAAGATGACGGGCCAAGGTAGTATTCATTATGGTTATTGCAATT
TCCAAGGACGATTTAACGCCAATGTTGAAGGTGGGACCTGGACACACGCC
ATGGTTACGGTATATATGAATACGAGAATGGTGACCGGTACGAAGGCGAA
TGGTTCCGTAACCGGAAAACTGGAACTGGGAAATATTTCCACAAAGAATC
AGAGTCGATTGGGGTCTACCGTTTTGCCAGTGGAGCTTTTTATAATGGTG
ACTACATTGATAACAAAAGAGAAGGACGTGGTACATTCGTTTATCCCGAT
GGTTCCAAGTATGACGCACTACGAAGGCGATAGAGATGAACTAGAAAGAA
GACATGGATTTGGGAAAGCATTCTTTCCAAACGGTGACACATACGAGGGT
GAATATTTGCATGGAAGACGAAATGGAAAGATGTCTGACGATGAACTTTC
AGAGAGTGGAGATCTAAACATTGGACCTGGACTCGTCAATTGAGTCAAAG
GGGTTGGAAAATTTATTTTCCCAAAGAGAAGGATTGAAATCAATGGTGTC
TACAAGGCATTTCTACTTTCCGAAGGTCAATGGGTAGATGGTAAGATGAC
GGGCCAAGGTAGTATTCATTATGGTTATTGCAATTTCCAAGGACGATTTA
ACGCCAATGTTGAAGGTGGGACCTGGACACACGCCATGGTTACGGTATAT
ATGAATACGAGAATGGTGACCGGTACGAAGGCGAATGGTTCCGTAACCGG
AAAACTGGAACTGGGAAATATTTCCACAAAGAATCAGAGTCGATTGGGGT
CTACCGTTTTGCCAGTGGAGCTTTTTATAATGGTGACTACATTGATAACA
AAAGAGAAGGACGTGGTACATTCGTTTATCCCGATGGTTCCAAGTATGAC
GCACTACGAAGGCGATAGAGATGAACTAGAAAGAAGACATGGATTTGGGA
AAGCATTCTTTCCAAACGGTGACACATACGAGGGTGAATATTTGCATGGA
AGACGAAATGGAAAGATGTCTGACGATGAACTTTCAGAGAGTGGAGATCT
AAACATTGGACCTGGACTCGTCAATTGAGTCAAAGGGGTTGGAAAATTTA
TTTTCCCAAAGAGAAGGATTGAAATCAATGGTGTCTACAAGGCATTTCTA
CTTTCCGAAGGTCAATGGGTAGATGGTAAGATGACGGGCCAAGGTAGTAT
TCATTATGGTTATTGCAATTTCCAAGGACGATTTAACGCCAATGTTGAAG
GTGGGACCTGGACACACGCCATGGTTACGGTATATATGAATACGAGAATG
GTGACCGGTACGAAGGCGAATGGTTCCGTAACCGGAAAACTGGAACTGGG
AAATATTTCCACAAAGAATCAGAGTCGATTGGGGTCTACCGTTTTGCCAG
TGGAGCTTTTTATAATGGTGACTACATTGATAACAAAAGAGAAGGACGTG
GTACATTCGTTTATCCCGATGGTTCCAAGTATGACGCACTACGAAGGCGA
TAGAGATGAACTAGAAAGAAGACATGGATTTGGGAAAGCATTCTTTCCAA
ACGGTGACACATACGAGGGTGAATATTTGCATGGAAGACGAAATGGAAAG
ATGTCTGACGATGAACTTTCAGAGAGTGGAGATCTAAACATTGGA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_039665XLOC_039665Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00063293-proteinTCONS_00063293-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00063293-exon-scaffold_385-1575043694:461670..461783TCONS_00063293-exon-scaffold_385-1575043694:461670..461783Clytia hemisphaericaexon
TCONS_00063293-exon-scaffold_385-1575043694:461435..461548TCONS_00063293-exon-scaffold_385-1575043694:461435..461548Clytia hemisphaericaexon
TCONS_00063293-exon-scaffold_385-1575043694:460859..460964TCONS_00063293-exon-scaffold_385-1575043694:460859..460964Clytia hemisphaericaexon
TCONS_00063293-exon-scaffold_385-1575043694:458596..458729TCONS_00063293-exon-scaffold_385-1575043694:458596..458729Clytia hemisphaericaexon
TCONS_00063293-exon-scaffold_385-1575043694:456337..456429TCONS_00063293-exon-scaffold_385-1575043694:456337..456429Clytia hemisphaericaexon
TCONS_00063293-exon-scaffold_385-1575043694:455988..456062TCONS_00063293-exon-scaffold_385-1575043694:455988..456062Clytia hemisphaericaexon
TCONS_00063293-exon-scaffold_385-1575043694:454907..454964TCONS_00063293-exon-scaffold_385-1575043694:454907..454964Clytia hemisphaericaexon
TCONS_00063293-exon-scaffold_385-1510915933:461670..461783TCONS_00063293-exon-scaffold_385-1510915933:461670..461783Clytia hemisphaericaexon
TCONS_00063293-exon-scaffold_385-1510915933:461435..461548TCONS_00063293-exon-scaffold_385-1510915933:461435..461548Clytia hemisphaericaexon
TCONS_00063293-exon-scaffold_385-1510915933:460859..460964TCONS_00063293-exon-scaffold_385-1510915933:460859..460964Clytia hemisphaericaexon
TCONS_00063293-exon-scaffold_385-1510915933:458596..458729TCONS_00063293-exon-scaffold_385-1510915933:458596..458729Clytia hemisphaericaexon
TCONS_00063293-exon-scaffold_385-1510915933:456337..456429TCONS_00063293-exon-scaffold_385-1510915933:456337..456429Clytia hemisphaericaexon
TCONS_00063293-exon-scaffold_385-1510915933:455988..456062TCONS_00063293-exon-scaffold_385-1510915933:455988..456062Clytia hemisphaericaexon
TCONS_00063293-exon-scaffold_385-1510915933:454907..454964TCONS_00063293-exon-scaffold_385-1510915933:454907..454964Clytia hemisphaericaexon
TCONS_00063293-exon-scaffold_385-1491911889:461670..461783TCONS_00063293-exon-scaffold_385-1491911889:461670..461783Clytia hemisphaericaexon
TCONS_00063293-exon-scaffold_385-1491911889:461435..461548TCONS_00063293-exon-scaffold_385-1491911889:461435..461548Clytia hemisphaericaexon
TCONS_00063293-exon-scaffold_385-1491911889:460859..460964TCONS_00063293-exon-scaffold_385-1491911889:460859..460964Clytia hemisphaericaexon
TCONS_00063293-exon-scaffold_385-1491911889:458596..458729TCONS_00063293-exon-scaffold_385-1491911889:458596..458729Clytia hemisphaericaexon
TCONS_00063293-exon-scaffold_385-1491911889:456337..456429TCONS_00063293-exon-scaffold_385-1491911889:456337..456429Clytia hemisphaericaexon
TCONS_00063293-exon-scaffold_385-1491911889:455988..456062TCONS_00063293-exon-scaffold_385-1491911889:455988..456062Clytia hemisphaericaexon
TCONS_00063293-exon-scaffold_385-1491911889:454907..454964TCONS_00063293-exon-scaffold_385-1491911889:454907..454964Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_385supercontigscaffold_385:454907..461783 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0.0713328	0.0828242	0.162061	0.690528	0.311808	0.188092	0.264134	0.493137	0.992598	0.148221	0.341022	0.0486498	0	0	0.0891511	0.439307	0.731698	0	0.0813703	0.63653	1.13842	0.419362	0	195.559	170.747	0	0	0.243572	0.165441
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR003409MORN
Blast
[Close]
BLAST of TCONS_00063293 vs. Swiss-Prot (Human)
Match: RSPH1 (Radial spoke head 1 homolog OS=Homo sapiens GN=RSPH1 PE=1 SV=1)

HSP 1 Score: 155.606 bits (392), Expect = 4.174e-45
Identity = 80/162 (49.38%), Postives = 111/162 (68.52%), Query Frame = 1 
Query:  106 NIGHYEGDRDELERRHGFGKAFFPNGDTYEGEYLHGRRNGKGVYRFASGAFYNGDYIDNKREGRGTFVYPDGSKYDGRWDLDTRHGYGIYEYENGDRYEGEWFRNRKTGTGKYFHKESESISEGQWVDGKMTGQGSIHYGYCNFQGRF-NANVVKGVGKFIF 588
            +IG YEG R+E   RHG G+A  PNGDTYEG Y  G+R+G+G+Y+F +GA Y G+Y+ NK+ G+GTF+YPDGS+Y+G W  D RHG+G+Y Y N D Y GEWF +++ G G Y + E+ S   G WV+G+  G   + +    +QG+F N N V G GK++F
Sbjct:   16 DIGEYEGGRNEAGERHGRGRARLPNGDTYEGSYEFGKRHGQGIYKFKNGARYIGEYVRNKKHGQGTFIYPDGSRYEGEWANDLRHGHGVYYYINNDTYTGEWFAHQRHGQGTYLYAETGSKYVGTWVNGQQEGTAELIHLNHRYQGKFLNKNPV-GPGKYVF 176
The following BLAST results are available for this feature:
BLAST of TCONS_00063293 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
RSPH14.174e-4549.38Radial spoke head 1 homolog OS=Homo sapiens GN=RSP... [more]
back to top