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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00063316 ID=TCONS_00063316|Name=TCONS_00063316|organism=Clytia hemisphaerica|type=transcript|length=1908bp
TTAAGGTAAAGTGACGAGAACAATACTGCACTTCTGCGACGTATTATGGC
GCGAAGTTTTCTTACAAAAGAAATAGTTTACTTCCGTGTGGCGATTCCCC
GGATTAAAGACTATTTTTTAGAGAGgtgaaatgtaaacaaacacgTTTTC
AAGATGGCGCGATAAAAAGTTAGAATTTTGTACACAGGAAAAATCTTTCG
AAGAAGATGTATCGGACATTGAATAAGATATCAAGCAAATCTTCGTATCT
TTATTTAATAACGATTGCAATACTTAGCATATGGTTAATTTCATGCAAAT
TCACAATATACAAACTGAATCAGCAATCTGGAAATGTTCTTAGTGTAAAA
CGAAGAGGAACATCACAATTTATCAAGGCTGGTAATAAGATAAACTGTTA
CATGTTCATATTGATTATGAGTTCCCCAAAAGGGGCTTTAAGGAGAACAT
CAATGAGAGAAACTTGGATAAAAACTAACGACGTAAATAAACTGAAAATA
GAAAGAAGATTCATAATTGGCACCAAAGGGCTGACACCCAATATTCTTAA
AGAACTGTCAAGTGAGCAAGCCAAACACTCAGACTTGCTTTTATTGGATG
ATTTTGCAGACTCGTATTCGAAATTGACAGAAAAACTTTTGAGAACAATT
TTATGGATTGAGAATAATGTTGATGCTAAATTTGTCATGAAAGTTGATGA
TGATTCATTTGTACGCCTTGATAAACTTATTCCTTCTTTGTCTGCAAAAG
AACACATTGGGAGGATTTATTGGGGATTTTTCAAAGGAAATGCAAGAATT
AAAAGAGCTGGTGCTTGGAAAGAAACAAAGTGGTTTTTATCTGATCATTA
TCTTCCTTATGCAGTTGGTGGTGGATATGTTATTACCTTTGATCTTGTCA
CATTCATATCAAGCAATGCAAACTATTTGTCATTGTACAACAGTGAAGAT
GTTTCAATGGGTAAATTGTCTTCTTTTATTTAAGTAGGGAAAGCAGTAAT
TTTTNAACACATTGGGAGGATTTATTGGGGATTTTTCAAAGGAAATGCAA
GAATTAAAAGAGCTGGTGCTTGGAAAGAAACAAAGTGGTTTTTATCTGAT
CATTATCTTCCTTATGCAGTTGGTGGTGGATATGTTATTAGCTTTGATCT
TGTCACATTCATATCAAGCAATGCAAACTATTTGTCATTGTACAACAGTG
AAGATGTTTCAATGGGTGTATGGCTTGCATCCATCAAACTGAACCGTTTC
CACGATGTGCGTTTTGATACCTGGTACAAAAGTATGGGATGTAGTAACCT
TCATATAGTATCACATAAACAGCAACCTGAAGATATGTATGCTAAACATA
ACCAATTGACTAATAATGGAAAATTGTGTAAAGTTGAAAAAGAACTAATG
CTAACTTGGGACTACAACTGGAATGAATTTCCATCTAACTGTTGTAGTAA
ACGTGTTAAGATATCatcaattaaaacatttttgtgattttattgCACAC
AACTTGGGCATATATTTTCAaggtgaaaaactttcaattttagtGTAGCA
ATTATTTTTATgtcaaaaaaagctaaaaatgaaTATACATTACACAACAA
GCCAGTNAGTagcaattatttttataggaaGAATTAGAAcgatttatttt
gaagaaaaagttaTTCACCCCTAAATGTGGTTTCATTAATCATAACAAAA
ACAAGTTTTAAATTAAGAAACGTGTAGTGTAAATGTATATTCATGTATGA
AATGTATACCATGTACTTGAAAGAGTGAAATAAAGGAAAATCGAGGTgtc
aaaaaaagctaaaaatgaaTATACATTACACAACAAACCAGTTTATTTTC
TATCGAACTCTCTGTTACGGGTATCTTAACCTTTGGTTATTTGTAAAATA
Tagtaatg Run BLAST on NCBI transcript from alignment at scaffold_385:587179..590070- Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00063316 ID=TCONS_00063316|Name=TCONS_00063316|organism=Clytia hemisphaerica|type=transcript|length=2892bp|location=Sequence derived from alignment at scaffold_385:587179..590070- (Clytia hemisphaerica)
TTAAGGTAAAGTGACGAGAACAATACTGCACTTCTGCGACGTATTATGGC
GCGAAGTTTTCTTACAAAAGAAATAGTTTACTTCCGTGTGGCGATTCCCC
GGATTAAAGACTATTTTTTAGAGAGGTGAAATGTAAACAAACACGTTTTC
AAGATGGCGCGATAAAAAGTTAGAATTTTGTACACAGGAAAAATCTTTCG
AAGAAGATGTATCGGACATTGAATAAGATATCAAGCAAATCTTCGTATCT
TTATTTAATAACGATTGCAATACTTAGCATATGGTTAATTTCATGCAAAT
TCACAATATACAAACTGAATCAGCAATCTGGAAATGTTCTTAGTGTAAAA
CGAAGAGGAACATCACAATTTATCAAGGCTGGTAATAAGATAAACTGTTA
CATGTTCATATTGATTATGAGTTCCCCAAAAGGGGCTTTAAGGAGAACAT
CAATGAGAGAAACTTGGATAAAAACTAACGACGTAAATAAACTGAAAATA
GAAAGAAGATTCATAATTGGCACCAAAGGGCTGACACCCAATATTCTTAA
AGAACTGTCAAGTGAGCAAGCCAAACACTCAGACTTGCTTTTATTGGATG
ATTTTGCAGACTCGTATTCGAAATTGACAGAAAAACTTTTGAGAACAATT
TTATGGATTGAGAATAATGTTGATGCTAAATTTGTCATGAAAGTTGATGA
TGATTCATTTGTACGCCTTGATAAACTTATTCCTTCTTTGTCTGCAAAAG
AACACATTGGGAGGATTTATTGGGGATTTTTCAAAGGAAATGCAAGAATT
AAAAGAGCTGGTGCTTGGAAAGAAACAAAGTGGTTTTTATCTGATCATTA
TCTTCCTTATGCAGTTGGTGGTGGATATGTTATTACCTTTGATCTTGTCA
CATTCATATCAAGCAATGCAAACTATTTGTCATTGTACAACAGTGAAGAT
GTTTCAATGGGTAAATTGTCTTCTTTTATTTAAGTAGGGAAAGCAGTAAT
TTTTNAACACATTGGGAGGATTTATTGGGGATTTTTCAAAGGAAATGCAA
GAATTAAAAGAGCTGGTGCTTGGAAAGAAACAAAGTGGTTTTTATCTGAT
CATTATCTTCCTTATGCAGTTGGTGGTGGATATGTTATTAGCTTTGATCT
TGTCACATTCATATCAAGCAATGCAAACTATTTGTCATTGTACAACAGTG
AAGATGTTTCAATGGGTAAATTGTCTTCTTTTATTTAAGTAGGGGAAGCA
GTAATTTTTCGCTTACAATATGGCCTACCTTAAGGCGAGAAATTTCCGCG
GGTACAAATTTTCGCGAATTTTAGTCGATTTCGCAAAATTAAATACCCAC
GAAATAAATGTATCTAGGAGTCGCATTCGCGAAAATTTATACCTGCGAAA
GTAGATTAAAATTGAAAGTAAGGGGATTTTATAGACCAAGCCACTAACAA
GAACAAAAAAAGGTTAATTTTTTCCGATTCACGAAAATAGATACCCGCAA
AATTTTATGTTTGCATCCATTCGCGAAAATAAATCTCCGCGAAAATTTCT
CGCCTTAAGGTATTTTGCCCTCAAATTTGGAGGTATTTTTTTCATTTTGA
GAATGCCTTATAAAAAAAATAAGTATTTTTGATTTTCGGTCTATTTTGAA
AATTTTTAGCGTGTATTTAATTTTGCAATTTTGTATTTTTGAAAAGTTTA
AACAGTATTAAATTGCGCGAAATTAAGTACCTGCAAAATTTTGTAACCAA
CAAAATTTAATACCAATAAGGTATTCATGTTTCATGGAATTTAATTTTGC
AATTTGTCAAAAAACAGAAATTAAATTCAGCGACAATTTATTCCTGTGAA
AATTTGTTCCCTCAAGTTATTTTGAGAAATTTAATGTTTACACTTATTTT
TGTGGTAGACCTAAAACTGATGAAATTACCTTCTGGGAACTAATTTTCCC
AAGAACTAATTTTTGCAAAAACTTATTTTTGATTTAAAAAATATTAAATT
ACAATGTATTTTTTTGTTAAAAATCTGGTTCTGCAAATCTCCCAAGATCT
GCCAAGATAGCAATTTCTCCCCATTTTGCAAGATTGATTTTTGCGAAAAT
AGTAAAAAATGATTGAAACTGCAAAATCAAATCGAGTGAATTAGTATGAT
TAAAGATTAGTAGATGTTTAGCTTGAATTAATCTGTTTATTATTTATAGG
TGTATGGCTTGCATCCATCAAACTGAACCGTTTCCACGATGTGCGTTTTG
ATACCTGGTACAAAAGTATGGGATGTAGTAACCTTCATATAGTATCACAT
AAACAGCAACCTGAAGATATGTATGCTAAACATAACCAATTGACTAATAA
TGGAAAATTGTGTAAAGTTGAAAAAGAACTAATGCTAACTTGGGACTACA
ACTGGAATGAATTTCCATCTAACTGTTGTAGTAAACGTGTTAAGATATCA
TCAATTAAAACATTTTTGTGATTTTATTGCACACAACTTGGGCATATATT
TTCAAGGTGAAAAACTTTCAATTTTAGTGTAGCAATTATTTTTATGTCAA
AAAAAGCTAAAAATGAATATACATTACACAACAAGCCAGTNAGTAGCAAT
TATTTTTATAGGAAGAATTAGAACGATTTATTTTGAAGAAAAAGTTATTC
ACCCCTAAATGTGGTTTCATTAATCATAACAAAAACAAGTTTTAAATTAA
GAAACGTGTAGTGTAAATGTATATTCATGTATGAAATGTATACCATGTAC
TTGAAAGAGTGAAATAAAGGAAAATCGAGGTGTCAAAAAAAGCTAAAAAT
GAATATACATTACACAACAAACCAGTTTATTTTCTATCGAACTCTCTGTT
ACGGGTATCTTAACCTTTGGTTATTTGTAAAATATAGTAATG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00063316-exon-scaffold_385-1575043694:588856..590070 | TCONS_00063316-exon-scaffold_385-1575043694:588856..590070 | Clytia hemisphaerica | exon |
| TCONS_00063316-exon-scaffold_385-1575043694:587179..587871 | TCONS_00063316-exon-scaffold_385-1575043694:587179..587871 | Clytia hemisphaerica | exon |
| TCONS_00063316-exon-scaffold_385-1510915933:588856..590070 | TCONS_00063316-exon-scaffold_385-1510915933:588856..590070 | Clytia hemisphaerica | exon |
| TCONS_00063316-exon-scaffold_385-1510915933:587179..587871 | TCONS_00063316-exon-scaffold_385-1510915933:587179..587871 | Clytia hemisphaerica | exon |
| TCONS_00063316-exon-scaffold_385-1491911889:588856..590070 | TCONS_00063316-exon-scaffold_385-1491911889:588856..590070 | Clytia hemisphaerica | exon |
| TCONS_00063316-exon-scaffold_385-1491911889:587179..587871 | TCONS_00063316-exon-scaffold_385-1491911889:587179..587871 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_385 | supercontig | scaffold_385:587179..590070 - |
Blast
BLAST of TCONS_00063316 vs. Swiss-Prot (Human)
Match: B3GT6 (Beta-1,3-galactosyltransferase 6 OS=Homo sapiens GN=B3GALT6 PE=1 SV=2) HSP 1 Score: 167.548 bits (423), Expect = 4.624e-46 Identity = 77/148 (52.03%), Postives = 103/148 (69.59%), Query Frame = 3
Query: 1020 IYWGFFKGNARIKRAGAWKETKWFLSDHYLPYAVGGGYVISFDLVTFIXXXXXXXXXXXXEDVSMGVWLASIKLNRFHDVRFDTWYKSMGCSNLHIVSHKQQPEDMYAKHNQLTNNGKLCKVEKELMLTWDYNWNEFPSNCCSKRVKI 1463
+YWGFF G R+K G W+E W L D+YLPYA+GGGYV+S DLV ++ + +YL ++SEDVS+G WLA + + R HD RFDT Y+S GCSN ++V+HKQ EDM KH L G+LCK E +L L++ Y+W+ PS CC +R I
Sbjct: 181 LYWGFFSGRGRVKPGGRWREAAWQLCDYYLPYALGGGYVLSADLVHYLRLSRDYLRAWHSEDVSLGAWLAPVDVQREHDPRFDTEYRSRGCSNQYLVTHKQSLEDMLEKHATLAREGRLCKREVQLRLSYVYDWSAPPSQCCQRREGI 328 HSP 2 Score: 142.51 bits (358), Expect = 1.982e-37 Identity = 83/183 (45.36%), Postives = 116/183 (63.39%), Query Frame = 3
Query: 420 SSPKGALRRTSMRETWIKTNDVNKLKIERRFIIGTKGLTPNILKELSSEQAKHSXXXXXXXFADSYSKLTEKLLRTILWIENNVDAKFVMKVDDDSFVRLDKLIPSLSAKEHIGR--IYWGFFKGNARIKRAGAWKETKWFLSDHYLPYAVGGGYVITFDLVTFIXXXXXXXXXXXXEDVSMG 962
S+P+ A RR+ +R TW+ + RF +GT GL + L EQA+H DLLLL D+Y LT K+L + W++ +V +FV+K DDDSF RLD L+ L A+E R +YWGFF G R+K G W+E W L D+YLPYA+GGGYV++ DLV ++ + +YL ++SEDVS+G
Sbjct: 65 SAPRAAERRSVIRSTWLARRGAPG-DVWARFAVGTAGLGAEERRALEREQARHGDLLLLPALRDAYENLTAKVLAMLAWLDEHVAFEFVLKADDDSFARLDALLAELRAREPARRRRLYWGFFSGRGRVKPGGRWREAAWQLCDYYLPYALGGGYVLSADLVHYLRLSRDYLRAWHSEDVSLG 246
The following BLAST results are available for this feature:
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