TCONS_00063324 (transcript) - C. hemisphaerica

Overview
NameTCONS_00063324
Unique NameTCONS_00063324
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length278

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00063324 ID=TCONS_00063324|Name=TCONS_00063324|organism=Clytia hemisphaerica|type=transcript|length=278bp
ATTTCAATAATGTGGCAATTGCAGCTCGATTTGCACAATCGCAAGGCGTT
AAGAAGATCTTTATTGTTGATTGGGATGTTCATCACGGGAACGGCACACA
GGATGCTTTTTATGAGGAAAACGAAATATTGTATCTCTCCTTGCATCGAT
ATGAGACTTACCCTGGCTTAGAAAAAGCAAAGGCGGATCGTATTGGGAAG
GGCGTTGGTGAAGGTTACAATGTCAATATCGCTTGGGGCGGAGATCAAAA
GATGGGCGAAACTGAGTATAAGTATGCG
Run BLAST on NCBI

transcript from alignment at scaffold_385:132666..132943

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00063324 ID=TCONS_00063324|Name=TCONS_00063324|organism=Clytia hemisphaerica|type=transcript|length=278bp|location=Sequence derived from alignment at scaffold_385:132666..132943 (Clytia hemisphaerica)
CGCATACTTATACTCAGTTTCGCCCATCTTTTGATCTCCGCCCCAAGCGA
TATTGACATTGTAACCTTCACCAACGCCCTTCCCAATACGATCCGCCTTT
GCTTTTTCTAAGCCAGGGTAAGTCTCATATCGATGCAAGGAGAGATACAA
TATTTCGTTTTCCTCATAAAAAGCATCCTGTGTGCCGTTCCCGTGATGAA
CATCCCAATCAACAATAAAGATCTTCTTAACGCCTTGCGATTGTGCAAAT
CGAGCTGCAATTGCCACATTATTGAAAT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_039674XLOC_039674Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00063324-exon-scaffold_385-1491911889:132666..132943TCONS_00063324-exon-scaffold_385-1491911889:132666..132943Clytia hemisphaericaexon
TCONS_00063324-exon-scaffold_385-1510915933:132666..132943TCONS_00063324-exon-scaffold_385-1510915933:132666..132943Clytia hemisphaericaexon
TCONS_00063324-exon-scaffold_385-1575043694:132666..132943TCONS_00063324-exon-scaffold_385-1575043694:132666..132943Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_385supercontigscaffold_385:132666..132943 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0	0	0	0	8.48385	10.9973	10.2659	5.29834	5.65697	2.36642	11.8157	6.66123	0.576467	0.927957	0.381055	1.17171	87.9537	32.7494	0.490779	0.718155	0.582007	0.529129	0.544991	0.972782	0	0	0	0.574015
Blast
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BLAST of TCONS_00063324 vs. Swiss-Prot (Human)
Match: HDAC7 (Histone deacetylase 7 OS=Homo sapiens GN=HDAC7 PE=1 SV=2)

HSP 1 Score: 105.531 bits (262), Expect = 3.530e-27
Identity = 51/95 (53.68%), Postives = 63/95 (66.32%), Query Frame = 3 
Query:    3 FNNVAIAARFAQSQG-VKKIFIVDWDVHHGNGTQDAFYEENEILYLSLHRYET---YPGLEKAKADRIGKGVGEGYNVNIAWGG--DQKMGETEY 269
            FN+VAIA R  Q Q    KI IVDWDVHHGNGTQ  FY++  +LY+SLHR++    +PG      D +G G GEG+NVN+AW G  D  MG+ EY
Sbjct:  682 FNSVAIACRQLQQQSKASKILIVDWDVHHGNGTQQTFYQDPSVLYISLHRHDDGNFFPG--SGAVDEVGAGSGEGFNVNVAWAGGLDPPMGDPEY 774
The following BLAST results are available for this feature:
BLAST of TCONS_00063324 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
HDAC73.530e-2753.68Histone deacetylase 7 OS=Homo sapiens GN=HDAC7 PE=... [more]
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