|
|
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00063325 ID=TCONS_00063325|Name=TCONS_00063325|organism=Clytia hemisphaerica|type=transcript|length=932bp
gttcctgCTGCTTTTTTTATTCACAATATTCAAGACTCCCATAATTAAAT
TTAAATAATttctaataaaatataatttcaaaactatttcaaaaaaaaag
atattatattaacatatttacaatcgcaaatgactagcaattaaaaaata
ataaaattatcCTTTTCCAATGTACATACaaaaaaacattctttaaattt
cttttaaattaaCAATCCACAAAAACataaattcgatgaaaatctcttct
caaaaagtcaatttttggttCCAATACCAAATTAATTATCTTCTTCTCGT
ACAGTCCAGTTGTTGGCATTTTGAAAGGGGATTCCAACATCTTTCCGTTG
TGAggaaaatttacaaaacaaaTTGTTTTATACTTTGAGTTTGAATATAG
TATCTCAACACCAATTTAAGTCCTGCTTTTTCCTCATCTGTGGTGATAAA
GACAGCATTGCGTCGAGGTCTTTTCAAATATTCGTTAACTTTTGTAACTT
CGTTTCCACCGATACAAACTTCAGTTTCCAATGTTTTAGTTTTAGCACAA
GCATTTTCAATTTGGTCTTTGTTTTGACATGGTTTTGTTGAGTAGACTAA
AAAGTCACTGCTAATACGTTTTTCGagtttgttctttttatttgagcATT
GTGTTGTCGGTAATGATGTCGTCTTAGTTGACGTCGTTGTTGTCGTTAAA
GTATTTAATGTCGGCGATGTTGATTGTTGTTGCTTTTTATTACGATGAAT
ACAACTTTTTGCTTTCTTGCTGATACGACACGCAAGTCGAATAAAAGTCT
TCATTCCCTGTTGGTTAGTGTTCTTGGCGAGCTGCATTTGTTGTGTAGTG
TCCACTGCCATCTTTGACAAAGATGTTAGAAtccagtaaaaaaaattata
aatgtgtGTTTTCTGTATGTATGTATTTTGTG Run BLAST on NCBI protein sequence of TCONS_00063325-protein >TCONS_00063325-protein ID=TCONS_00063325-protein|Name=TCONS_00063325-protein|organism=Clytia hemisphaerica|type=polypeptide|length=189bp
QNTYIQKTHIYNFFYWILTSLSKMAVDTTQQMQLAKNTNQQGMKTFIRLA
CRISKKAKSCIHRNKKQQQSTSPTLNTLTTTTTSTKTTSLPTTQCSNKKN
KLEKRISSDFLVYSTKPCQNKDQIENACAKTKTLETEVCIGGNEVTKVNE
YLKRPRRNAVFITTDEEKAGLKLVLRYYIQTQSIKQFVL Run BLAST on NCBI transcript from alignment at scaffold_385:150780..151711 Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00063325 ID=TCONS_00063325|Name=TCONS_00063325|organism=Clytia hemisphaerica|type=transcript|length=932bp|location=Sequence derived from alignment at scaffold_385:150780..151711 (Clytia hemisphaerica)
CACAAAATACATACATACAGAAAACacacatttataattttttttactgg
aTTCTAACATCTTTGTCAAAGATGGCAGTGGACACTACACAACAAATGCA
GCTCGCCAAGAACACTAACCAACAGGGAATGAAGACTTTTATTCGACTTG
CGTGTCGTATCAGCAAGAAAGCAAAAAGTTGTATTCATCGTAATAAAAAG
CAACAACAATCAACATCGCCGACATTAAATACTTTAACGACAACAACGAC
GTCAACTAAGACGACATCATTACCGACAACACAATgctcaaataaaaaga
acaaactCGAAAAACGTATTAGCAGTGACTTTTTAGTCTACTCAACAAAA
CCATGTCAAAACAAAGACCAAATTGAAAATGCTTGTGCTAAAACTAAAAC
ATTGGAAACTGAAGTTTGTATCGGTGGAAACGAAGTTACAAAAGTTAACG
AATATTTGAAAAGACCTCGACGCAATGCTGTCTTTATCACCACAGATGAG
GAAAAAGCAGGACTTAAATTGGTGTTGAGATACTATATTCAAACTCAAAG
TATAAAACAAtttgttttgtaaattttccTCACAACGGAAAGATGTTGGA
ATCCCCTTTCAAAATGCCAACAACTGGACTGTACGAGAAGAAGATAATTA
ATTTGGTATTGGaaccaaaaattgactttttgagaagagattttcatcga
atttatGTTTTTGTGGATTGttaatttaaaagaaatttaaagaatgtttt
tttGTATGTACATTGGAAAAGgataattttattattttttaattgctagt
catttgcgattgtaaatatgttaatataatatctttttttttgaaatagt
tttgaaattatattttattagaaATTATTTAAATTTAATTATGGGAGTCT
TGAATATTGTGAATAAAAAAAGCAGcaggaac Coding sequence (CDS) from alignment at scaffold_385:150780..151711 >TCONS_00063325 ID=TCONS_00063325|Name=TCONS_00063325|organism=Clytia hemisphaerica|type=CDS|length=570bp|location=Sequence derived from alignment at scaffold_385:150780..151711 (Clytia hemisphaerica)
CAAAATACATACATACAGAAAACacacatttataattttttttactggaT
TCTAACATCTTTGTCAAAGATGGCAGTGGACACTACACAACAAATGCAGC
TCGCCAAGAACACTAACCAACAGGGAATGAAGACTTTTATTCGACTTGCG
TGTCGTATCAGCAAGAAAGCAAAAAGTTGTATTCATCGTAATAAAAAGCA
ACAACAATCAACATCGCCGACATTAAATACTTTAACGACAACAACGACGT
CAACTAAGACGACATCATTACCGACAACACAATgctcaaataaaaagaac
aaactCGAAAAACGTATTAGCAGTGACTTTTTAGTCTACTCAACAAAACC
ATGTCAAAACAAAGACCAAATTGAAAATGCTTGTGCTAAAACTAAAACAT
TGGAAACTGAAGTTTGTATCGGTGGAAACGAAGTTACAAAAGTTAACGAA
TATTTGAAAAGACCTCGACGCAATGCTGTCTTTATCACCACAGATGAGGA
AAAAGCAGGACTTAAATTGGTGTTGAGATACTATATTCAAACTCAAAGTA
TAAAACAAtttgttttgtaa
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00063325-exon-scaffold_385-1491911889:150780..151711 | TCONS_00063325-exon-scaffold_385-1491911889:150780..151711 | Clytia hemisphaerica | exon |
| TCONS_00063325-exon-scaffold_385-1510915933:150780..151711 | TCONS_00063325-exon-scaffold_385-1510915933:150780..151711 | Clytia hemisphaerica | exon |
| TCONS_00063325-exon-scaffold_385-1575043694:150780..151711 | TCONS_00063325-exon-scaffold_385-1575043694:150780..151711 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_385 | supercontig | scaffold_385:150780..151711 . |
Blast
The following BLAST results are available for this feature:
|
