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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00063329 ID=TCONS_00063329|Name=TCONS_00063329|organism=Clytia hemisphaerica|type=transcript|length=1662bp
CTGAAATTACCCTTGAAACGCTtgttcaaaaaaataatgaaaaggaGCCA
GCATGTGTCGTCACTTTAAATGTTTACTTTTAATATAGGACAAAGAGATT
GGTTATCAAAAGTGTGTAAAAATTGACATCAAGTATGACAGTACTGAGCA
ACAGGgacatgttttattttttggtcTTTGATCTGAAATGTCttgttttt
ttgctcaaaatttgtgAGGAATCTCCATGTGAGATATTTTTTGGGATCAT
TTTTGCCACCTGTTGCTAgatcgtgtattttacagaccagccTAAAAATG
CCCTTTTTGCCTAAATCAGCCCTGGGATACTGAACCTAGTAATGGGAGAA
ATAATGCCATTGCCTTGAAATTTTAGGGCTACTGGAATGCGCAATATGGC
AAACaatgtttgacaaatttttttccgacTGTAATGTATGAAGCAAACAG
GTGCTCTATCTGGCTTtaatataaaaaggaatttacCTTTTGTAAACAAT
AACGGGTATATCTGCCTATATATTGTTAGAATAATTGCAAATTCAACTGA
CAATATATTACACACAAGTTTTCAATATATCGTCACTCTTTTGCCTGGTA
TGGTAATATATTGGCAGTACATTGACAGTATATTGTGTAGTATATGTAGC
CATTCAGGTATTGATAATACAAGCTTGCAGCAAAATCGGACAAGCCAGGT
CGAATTAgagacttcaaattttcaacattttgatcTTTGTTAGTGGGTAA
ATTTCCTAAATAGCTGAGTAAATTGAGATTCATTCAACAATTGAATGGTA
ATTATTTGATTGCGTTTggttgcgttcaattgatttggtgttcgatttgt
tcgattgacacacCATCTGGTCATCCTTTTTTAACTGTTGagaaaatttc
ctgattttcaatttttttccccaCTTTTCTGTTTATGTTTCCCAACTTTT
AGTTTCCCAATTTTTAGTTTCCCACCCATAttgattttcagataaaaatt
ttccccatttttccttttttgggttaaaaaaagattttctgacctttcga
aaaaaaggaaatctgcctaggatttgaaatttttatatatccACACCCAT
TGTGAACCTCAAGTTTCACTCTTACTCAACTTTTCACCAGTTATAATATA
GTCTGATAAAAAATGCACTGAGATCTGCAAACACTTTGTAGACTAGGTAT
GTCAGCATGAAATTACATCATGGTATGAAACTACAGTAAAcgcttttaaa
gaaaaatttcaggTGTTTGTCCAGGGCAACAATTTGCATAATGTAACACT
AAATAGTTCTGTTTCGCATAATTTTACTTTTCAATCAGGGGGCTCCCACA
GGGGCTGGCTTGACacgggggcacgcagttactacaagacagtatgacac
ttactaccgtggtggtactgtattcagaagttatgaaaacagttactaca
cagtgtagtaactgctgtttgNctaccgtggtggtactgtattcagaagt
tatgaaaacagttactacacagtgtagtaactgccgTTTGGGGGTGGAGC
Cgaacactaaaactagcacttttggtgtactgtagtaagtgcttatattt
taattctttttaaagaactttcaaaatttttcacaaaaaatgaatttttt
tgtgaaaaaatt Run BLAST on NCBI transcript from alignment at scaffold_385:227036..228697 Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00063329 ID=TCONS_00063329|Name=TCONS_00063329|organism=Clytia hemisphaerica|type=transcript|length=1662bp|location=Sequence derived from alignment at scaffold_385:227036..228697 (Clytia hemisphaerica)
aattttttcacaaaaaaattcattttttgtgaaaaattttgaaagttctt
taaaaagaattaaaatataagcacttactacagtacaccaaaagtgctag
ttttagtgttcGGCTCCACCCCCAAAcggcagttactacactgtgtagta
actgttttcataacttctgaatacagtaccaccacggtagNcaaacagca
gttactacactgtgtagtaactgttttcataacttctgaatacagtacca
ccacggtagtaagtgtcatactgtcttgtagtaactgcgtgcccccgtGT
CAAGCCAGCCCCTGTGGGAGCCCCCTGATTGAAAAGTAAAATTATGCGAA
ACAGAACTATTTAGTGTTACATTATGCAAATTGTTGCCCTGGACAAACAc
ctgaaatttttctttaaaagcgTTTACTGTAGTTTCATACCATGATGTAA
TTTCATGCTGACATACCTAGTCTACAAAGTGTTTGCAGATCTCAGTGCAT
TTTTTATCAGACTATATTATAACTGGTGAAAAGTTGAGTAAGAGTGAAAC
TTGAGGTTCACAATGGGTGTggatatataaaaatttcaaatcctaggcag
atttcctttttttcgaaaggtcagaaaatctttttttaacccaaaaaagg
aaaaatggggaaaatttttatctgaaaatcaaTATGGGTGGGAAACTAAA
AATTGGGAAACTAAAAGTTGGGAAACATAAACAGAAAAGtggggaaaaaa
attgaaaatcaggaaattttctCAACAGTTAAAAAAGGATGACCAGATGg
tgtgtcaatcgaacaaatcgaacaccaaatcaattgaacgcaaccAAACG
CAATCAAATAATTACCATTCAATTGTTGAATGAATCTCAATTTACTCAGC
TATTTAGGAAATTTACCCACTAACAAAgatcaaaatgttgaaaatttgaa
gtctcTAATTCGACCTGGCTTGTCCGATTTTGCTGCAAGCTTGTATTATC
AATACCTGAATGGCTACATATACTACACAATATACTGTCAATGTACTGCC
AATATATTACCATACCAGGCAAAAGAGTGACGATATATTGAAAACTTGTG
TGTAATATATTGTCAGTTGAATTTGCAATTATTCTAACAATATATAGGCA
GATATACCCGTTATTGTTTACAAAAGgtaaattcctttttatattaAAGC
CAGATAGAGCACCTGTTTGCTTCATACATTACAgtcggaaaaaaatttgt
caaacattGTTTGCCATATTGCGCATTCCAGTAGCCCTAAAATTTCAAGG
CAATGGCATTATTTCTCCCATTACTAGGTTCAGTATCCCAGGGCTGATTT
AGGCAAAAAGGGCATTTTTAggctggtctgtaaaatacacgatcTAGCAA
CAGGTGGCAAAAATGATCCCAAAAAATATCTCACATGGAGATTCCTcaca
aattttgagcaaaaaaacaaGACATTTCAGATCAAAgaccaaaaaataaa
acatgtcCCTGTTGCTCAGTACTGTCATACTTGATGTCAATTTTTACACA
CTTTTGATAACCAATCTCTTTGTCCTATATTAAAAGTAAACATTTAAAGT
GACGACACATGCTGGCtccttttcattatttttttgaacaAGCGTTTCAA
GGGTAATTTCAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00063329-exon-scaffold_385-1491911889:227036..228697 | TCONS_00063329-exon-scaffold_385-1491911889:227036..228697 | Clytia hemisphaerica | exon |
| TCONS_00063329-exon-scaffold_385-1510915933:227036..228697 | TCONS_00063329-exon-scaffold_385-1510915933:227036..228697 | Clytia hemisphaerica | exon |
| TCONS_00063329-exon-scaffold_385-1575043694:227036..228697 | TCONS_00063329-exon-scaffold_385-1575043694:227036..228697 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_385 | supercontig | scaffold_385:227036..228697 . |
Blast
The following BLAST results are available for this feature:
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