TCONS_00063334 (transcript) - C. hemisphaerica

Overview
NameTCONS_00063334
Unique NameTCONS_00063334
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length835

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00063334 ID=TCONS_00063334|Name=TCONS_00063334|organism=Clytia hemisphaerica|type=transcript|length=835bp
ATCATGCTCATCCCATATCGTGCGGTCGAGTAGGTTGTATCAATATCTCC
AAGATCGTAATTCAATTGATAAGACGCATCTTCGTTCTCTATACGAACAT
TCTTTATCATCTTCATTTTGGTTGTTCCCGAAAAATTCGTTGCTCGAACT
AACCAATCATGATTCTCAGAAGTTGTCAACAAATGTAACATTTCATTCCC
TAGATAATACTCTCCATCGGCATAACCGAAACCTCGTTTGTATTCTTCCC
AATTCCGGTCCTCAAAATTAATACTTCCATCAAAGCGGCGGTGGAAAGCT
AACCAACCACCACCCGCATATTCCATCATGCAATATACGTGGCGTTTGTG
CGTCGCCAACAACGTAACTTCATATACGCCGTCTCTACGGTATCCAACGT
TATACCAATCTttacaatttttaaagattAAATAGGAATAATATTTAGTC
CCTGGTTGTGTTTTGAAACTTCTTGTTTGGTTTTGATATGTTTCGAAAGT
AACGTCGTAAAAATTGCAGACTCCGTTTGTTCCTTGTTGATGTGGTGGTG
TGTAATCGAACGAAAAGCATTCTGGGTTTAATGAGCACATGCTGATGCAT
CTTGGGTAACGAATGTCAACTTCAGTGTGAAAAGGAGTGTAGTCAACAGT
TTTGTCTGTTGCAATCAAGTTTAAAATTCTTGTGGAAGCCGCGAGGAATT
GAATGTTAATCAGTATATTGAAAACTTGATGTAGCTCCATACTCAACGAA
TCGCAATCGAGAAACAATAAACTCACCGGTTTAATGAGCTGAGGAACCAG
TCGCTCCGTCTCCGAGATAACCACGTATTTTTGAC
Run BLAST on NCBI

protein sequence of TCONS_00063334-protein

>TCONS_00063334-protein ID=TCONS_00063334-protein|Name=TCONS_00063334-protein|organism=Clytia hemisphaerica|type=polypeptide|length=277bp
QKYVVISETERLVPQLIKPVSLLFLDCDSLSMELHQVFNILINIQFLAAS
TRILNLIATDKTVDYTPFHTEVDIRYPRCISMCSLNPECFSFDYTPPHQQ
GTNGVCNFYDVTFETYQNQTRSFKTQPGTKYYSYLIFKNCKDWYNVGYRR
DGVYEVTLLATHKRHVYCMMEYAGGGWLAFHRRFDGSINFEDRNWEEYKR
GFGYADGEYYLGNEMLHLLTTSENHDWLVRATNFSGTTKMKMIKNVRIEN
EDASYQLNYDLGDIDTTYSTARYGMSM
Run BLAST on NCBI

transcript from alignment at scaffold_385:364914..365748

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00063334 ID=TCONS_00063334|Name=TCONS_00063334|organism=Clytia hemisphaerica|type=transcript|length=835bp|location=Sequence derived from alignment at scaffold_385:364914..365748 (Clytia hemisphaerica)
GTCAAAAATACGTGGTTATCTCGGAGACGGAGCGACTGGTTCCTCAGCTC
ATTAAACCGGTGAGTTTATTGTTTCTCGATTGCGATTCGTTGAGTATGGA
GCTACATCAAGTTTTCAATATACTGATTAACATTCAATTCCTCGCGGCTT
CCACAAGAATTTTAAACTTGATTGCAACAGACAAAACTGTTGACTACACT
CCTTTTCACACTGAAGTTGACATTCGTTACCCAAGATGCATCAGCATGTG
CTCATTAAACCCAGAATGCTTTTCGTTCGATTACACACCACCACATCAAC
AAGGAACAAACGGAGTCTGCAATTTTTACGACGTTACTTTCGAAACATAT
CAAAACCAAACAAGAAGTTTCAAAACACAACCAGGGACTAAATATTATTC
CTATTTaatctttaaaaattgtaaAGATTGGTATAACGTTGGATACCGTA
GAGACGGCGTATATGAAGTTACGTTGTTGGCGACGCACAAACGCCACGTA
TATTGCATGATGGAATATGCGGGTGGTGGTTGGTTAGCTTTCCACCGCCG
CTTTGATGGAAGTATTAATTTTGAGGACCGGAATTGGGAAGAATACAAAC
GAGGTTTCGGTTATGCCGATGGAGAGTATTATCTAGGGAATGAAATGTTA
CATTTGTTGACAACTTCTGAGAATCATGATTGGTTAGTTCGAGCAACGAA
TTTTTCGGGAACAACCAAAATGAAGATGATAAAGAATGTTCGTATAGAGA
ACGAAGATGCGTCTTATCAATTGAATTACGATCTTGGAGATATTGATACA
ACCTACTCGACCGCACGATATGGGATGAGCATGAT

Coding sequence (CDS) from alignment at scaffold_385:364914..365748

>TCONS_00063334 ID=TCONS_00063334|Name=TCONS_00063334|organism=Clytia hemisphaerica|type=CDS|length=831bp|location=Sequence derived from alignment at scaffold_385:364914..365748 (Clytia hemisphaerica)
CAAAAATACGTGGTTATCTCGGAGACGGAGCGACTGGTTCCTCAGCTCAT
TAAACCGGTGAGTTTATTGTTTCTCGATTGCGATTCGTTGAGTATGGAGC
TACATCAAGTTTTCAATATACTGATTAACATTCAATTCCTCGCGGCTTCC
ACAAGAATTTTAAACTTGATTGCAACAGACAAAACTGTTGACTACACTCC
TTTTCACACTGAAGTTGACATTCGTTACCCAAGATGCATCAGCATGTGCT
CATTAAACCCAGAATGCTTTTCGTTCGATTACACACCACCACATCAACAA
GGAACAAACGGAGTCTGCAATTTTTACGACGTTACTTTCGAAACATATCA
AAACCAAACAAGAAGTTTCAAAACACAACCAGGGACTAAATATTATTCCT
ATTTaatctttaaaaattgtaaAGATTGGTATAACGTTGGATACCGTAGA
GACGGCGTATATGAAGTTACGTTGTTGGCGACGCACAAACGCCACGTATA
TTGCATGATGGAATATGCGGGTGGTGGTTGGTTAGCTTTCCACCGCCGCT
TTGATGGAAGTATTAATTTTGAGGACCGGAATTGGGAAGAATACAAACGA
GGTTTCGGTTATGCCGATGGAGAGTATTATCTAGGGAATGAAATGTTACA
TTTGTTGACAACTTCTGAGAATCATGATTGGTTAGTTCGAGCAACGAATT
TTTCGGGAACAACCAAAATGAAGATGATAAAGAATGTTCGTATAGAGAAC
GAAGATGCGTCTTATCAATTGAATTACGATCTTGGAGATATTGATACAAC
CTACTCGACCGCACGATATGGGATGAGCATG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_039684XLOC_039684Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00063334-proteinTCONS_00063334-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00063334-exon-scaffold_385-1491911889:364914..365748TCONS_00063334-exon-scaffold_385-1491911889:364914..365748Clytia hemisphaericaexon
TCONS_00063334-exon-scaffold_385-1510915933:364914..365748TCONS_00063334-exon-scaffold_385-1510915933:364914..365748Clytia hemisphaericaexon
TCONS_00063334-exon-scaffold_385-1575043694:364914..365748TCONS_00063334-exon-scaffold_385-1575043694:364914..365748Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_385supercontigscaffold_385:364914..365748 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.0566737	0.110532	0	0.0627792	0	0	0.072863	0	0.238789	0.414091	0.0574181	0.339699	3.20381	3.67948	0.128725	0.0690707	0	0.087214	8.73558	7.31293	0.438363	0.561272	0.324905	0.236309	0.973569	2.60666	0	0	0	0.0640886
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR002181Fibrinogen_a/b/g_C_dom
IPR014716Fibrinogen_a/b/g_C_1
Blast
[Close]
BLAST of TCONS_00063334 vs. Swiss-Prot (Human)
Match: FGL2 (Fibroleukin OS=Homo sapiens GN=FGL2 PE=1 SV=1)

HSP 1 Score: 88.9669 bits (219), Expect = 5.676e-20
Identity = 52/149 (34.90%), Postives = 78/149 (52.35%), Query Frame = -3 
Query:   21 KTQPGTKYYSYLIFKNCKDWYNVGYRRDGVYEVTLLATHKR-HVYCMMEYAGGGWLAFHRRFDGSINFEDRNWEEYKRGFGYADGEYYLGNEMLHLLTTSENHDWLVRATNFSGTTKMKMIKNVRIENEDASYQLNYDLGDIDTTYSTA 464
            + Q  ++   +LI+K+C D+Y +G R    Y VT    +    VYC ME  GGGW     R DGS NF  R W++YK GFG    E++LGN+ +HLLT S+     +   +F+G     +     + NE   Y+L+  +G+ + T   A
Sbjct:  197 QEQIQSRPVQHLIYKDCSDYYAIGKRSSETYRVTPDPKNSSFEVYCDMETMGGGWTVLQARLDGSTNFT-RTWQDYKAGFGNLRREFWLGNDKIHLLTKSKEMILRIDLEDFNGVELYALYDQFYVANEFLKYRLH--VGNYNGTAGDA 342
The following BLAST results are available for this feature:
BLAST of TCONS_00063334 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
FGL25.676e-2034.90Fibroleukin OS=Homo sapiens GN=FGL2 PE=1 SV=1[more]
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