TCONS_00063353 (transcript) - C. hemisphaerica

Overview
NameTCONS_00063353
Unique NameTCONS_00063353
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length4326

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00063353 ID=TCONS_00063353|Name=TCONS_00063353|organism=Clytia hemisphaerica|type=transcript|length=4326bp
NCGTAAATATTTCCAGTTACAACATGGCGATAGAAAGTATAGTAAGCAAT
TTAAATATTTCAAGGAATTTCAAGAAACGAAGAGTCATAAAAACGCGAAA
TTCGAGCGACAGTGCTTTCcaagaatgggctcttccagaaaaaatccgtt
catggggggtggaggatatattatttttttcatgaattacccctggacat
tttgatttttaatccCCTAGACACGGgctatacccctggacaaacatcaa
atcaaccccgtggacacaaaaaattatccctggacattggaatttacccc
ctggacattgcgattttttggtattttttcaatacccctggacaattcat
cctccaccccccatgaacggattttttctggaagagcccattagaAAGGT
ATTTCATTAACTATTTAAAAAGCATTCTGTTTATACCCTTtaaaatcaag
tggtcaggagttagcGCTTTAAGTACGGGACTCGGTACATGGGTTAATtt
tgacttttcacttttcACTAGGGTTTGGAGGATTAAATCTCTTTTGTCAC
CAGGAGATTTGGTTCATAGTAGCTAAATATCTCCTACCTCcataattaaa
aaagaaagaatattaCAAAGATCGCTAATTAATATAAAAATGATCGGCAA
ACTGCATAAAGAACAGTGACTCTAGTATCTACtttgcccagctggcacac
aacgttgtttcaacgttcatctaacgttatatggacattgtgaacatcgg
aaaaacgttgaaacgacgttgtgtgccggctgggttgATTTGATTTCACA
AAACGGTCTTACATCCTAAGAGGCCATTGGCACGAGACCAAAAGTATTCA
AGGTTTATTTCTTTTCTCTGCTTTACAAGCTTAGGAAGAATATAATCATA
atctaaatatttcaaaatttcatgcgTGACAGTTTTAATAGTATAGTAGT
GGTTTCTCCACCCTCTAACAAATACAATTTCATATTGATTAGCCTTGAGC
TAAGTacacattgggcttttccagaaaaaaaccgtataccccctgtacaa
aaaactgtcaaaaataactggaattccatgggggtagccttttaaatcct
actaaattcagaattccagaggggtttaaacctgaaattgcctggaattc
cagggggttacagcatttcaagccacaaaatgatggacctcctcaacagg
gggtatacggtttttttctggaaaagcccattgtacTATTATTATACATc
aaatttaaagaaaagaaacatatttCTTATATAGTAGCTTCTAGCTAGTG
GTTTCTCCACCCCTTCAACAAATACTTCATTTCTTCCTTACAACGATAAG
GTTTGTGGTACACCGTAACACGTTGCCTTCCTGAAGAAACACATATGGAT
TTTCTCCTGGTCCAAATTCATTTTTATGTAGATGGTATGCTTTACAGTAT
TCGTTCTCTTGATTCAAAAGCGTACAATAGTCTTCTACAATGTCATAATG
ATTTGGAATTATCACAAGGATACCTTCGTTTGTTCGCTTCCTTGCTTCTT
TCACTGCTTCCTCAAACAGATCCACAAAAATAGGTTCACAACCAGCTGGG
AAATTACCAAGTGGAATTGCGATACCTTCTTTGTATGCATAATTGTTCTT
CTCCGCTACTGATTTAGTAGCTTTTGCAATTTGTTGAGAATTCCTGAAAT
TCTGTTTGAGATTAACTACGGAAAACTTTGTCCACCATTTTTCGTGATTT
CCTTTCTTTAAAGACTCAGTTGATGGGACGATCCATAAGTAGTCAACGAG
TGGCATAACCTGCTCTATGCGTTTCTTGGTAATTCGTAACCAGACGTCAC
ATTCATCAACAAATACTGCTTTGATATCACGTAATTTGATCTTTTCAATG
AGCTGAGTGAACGCTTTAGAAccctataaaataaaaaaaatgggcTGCTG
TCAATGGtaattaaaaaaggcaattaATTTGACTTCCANCAATTAATAAA
AGGCAATTTTTAAAAGAGCCTTTGATTAATTTTACTTCCTTATCACCTCT
TCATCGGCCCTTAATTAACGCCGACTAGACCCTTTTACGCCGTCTCTTGT
AATCCGTCACTGACAAATGTTAAGCTTACGCCGATTATAGCCGTGAATAA
CGCCAACAAGGACCGACGCAAGAAAGGCCTTGTTTATTTTATGTTGGAGT
AATAGACAAAAGTGGTCGTTGAATAAATCTATAGGTACTACACTTGTTAA
GATACTGAAAGGCGTTGTGACCGCTATAGAAGATCTTaggtctacacgtt
tttttttagaacatccaaaaataactttttcagttttaagcctaaaaatg
ttcttaacatgttcttattttcaccattttttcaccatttttacccattt
tcctaagaaatcgggtgattttgagtccataaagccttaaaatgttctta
acttgttcttaacattttaaccgtcgaagccttatgttcttatatagttt
gttcttattaaaaaaacgtgtattaattTTGTATTTGATAAATCACTCAT
CCGANTAgcttgttcttatttaaaaaaacgtgtattatttttgtatttaa
tAAATCACTCACCCGGAAATCATAATCTTCGACAAATATTCCAAGATTTT
CTTCGAGATCAACCTTCAATCGATGGAATAGAAGGTACTTTGTTTCACCT
CTCATAGATTCGACACCACTAACAACATACATAACCTTTCCATCATATTC
AGTTTGTTTGTTCAATTGCATGGCCTTCTGGGTAAGTAAGATACTTTTAC
CCCCACCAAATGGCCCATGAATCATCACTTTCTTGTAGCGTAGATCATCG
TTGTTCATTATTGCCATCTGTTGGTTGGAGTGGAACAAAATGTTGTGGCT
GGTTGACACATTTTCGATAGCGTTGCTGGTGTATTCAACCCAAGTTGAGC
TTGTAATTGGAGGTTGATCTTTTTTCGAAACGTGAATGGCAAAGATTAGC
ATTTTCAGGAGATCTTTAGTTTCCTCCAAAGGACTTGGTATGTGCGTTGT
CTGGACTGTCTGGAATTTGTTTAAGATACTGGTCAACCAGGGTTTGATTT
CAGTTTTCATGGTGATAAAATGCTGGCTGTTGACTGTGAAGTTGTCATTT
TCAACGCCGACAACCGGAAAATATGTCCAACCAGATTTTAATTGGTCTCC
TAGTCTCTCCTCAAAGATTTGATGACTCGATTTCAACTGCTTAAAGACTT
TCTCATCGACTATTGTCCTTTTCAGCTCAACGGAGATAACGAGTTTCCTT
TGCCAAGCGATGATTATGAAATCAGTTTCTTTATGCATTTTCTTTCTCAA
GTTTGTCAAGAATGTAAGCGATGAAAGAACAACTGTATCCTGGAGAATGT
CATCTTTTAATGGTAAAAGTTGGTCATAAAACCAATGTTCAAGTTTTTCA
CCAATTTTAGATAATTCCAATCTGAAAAGCCATTGGATGTTTGAATCTTG
GCTCGGCTTATCCTCAATCATTTGCTGAACTTGTTTCCTGAGGTTATTGA
CCAAACAATTTTGCTGGAGAAGTGTTTTCAAAGGCGACGGAAAAGGTAGC
ACTgccagctggcacaaaacgttgtttcaacgtttatttaacgttcacaa
cgtccatataacgttagatgaacgtttaaacaacgttgtgtgccagctgg
gctgcGATACTACAGTTGAGAAAAATTCCCAACTCCGATGTTGTTGATGG
TAGGTTTACTTGGTCAGTTTTCAGTTCTAGAATAACCACATACATAATTT
GAAGGTTTAAGATCCATCGGTCAAAAGCCTTCTTATCAATACAATCAGCA
CCATTTTGCGTAATAATAAAACTTTCCAACTCCTTTGTCAGCCAATACGT
TGGTGAATGTTGTTTCAAATTAACCAAAAGCCTTTCAATATCTTTGTCAA
TGTTATATTCTAGTAAAGCAGCCGAAGATTGTTTGTATTGGTttgaaaca
aatattggtgGTATAAAAACGCTTGTATGTTCATTTTGAACGAAAAGTGA
ACTATCACCATATTCCCTTTCGAGAATGAAGTCGGCTGCAACGATTGGAT
TCGCTGTACAATGTGTGTTGCCCAGATTGAACTGTTTTGCTTGTCTTTCT
GACGTGGCTTGACTGTTATTGAGAATCTGCGGATACAATGATTTGTTTGG
AGTACATTTGGTCGGATCGATTGGTTGTGCTTTCAAAGCCAATACATTAG
CAGTAATATTAGctaaattttctttataagcgATACCggccattttttgt
ttctttactCTGCTAGTCTCTCTAAT
Run BLAST on NCBI

transcript from alignment at scaffold_386:69891..74275-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00063353 ID=TCONS_00063353|Name=TCONS_00063353|organism=Clytia hemisphaerica|type=transcript|length=4385bp|location=Sequence derived from alignment at scaffold_386:69891..74275- (Clytia hemisphaerica)
NCGTAAATATTTCCAGTTACAACATGGCGATAGAAAGTATAGTAAGCAAT
TTAAATATTTCAAGGAATTTCAAGAAACGAAGAGTCATAAAAACGCGAAA
TTCGAGCGACAGTGCTTTCCAAGAATGGGCTCTTCCAGAAAAAATCCGTT
CATGGGGGGTGGAGGATATATTATTTTTTTCATGAATTACCCCTGGACAT
TTTGATTTTTAATCCCCTAGACACGGGCTATACCCCTGGACAAACATCAA
ATCAACCCCGTGGACACAAAAAATTATCCCTGGACATTGGAATTTACCCC
CTGGACATTGCGATTTTTTGGTATTTTTTCAATACCCCTGGACAATTCAT
CCTCCACCCCCCATGAACGGATTTTTTCTGGAAGAGCCCATTAGAAAGGT
ATTTCATTAACTATTTAAAAAGCATTCTGTTTATACCCTTTAAAATCAAG
TGGTCAGGAGTTAGCGCTTTAAGTACGGGACTCGGTACATGGGTTAATTT
TGACTTTTCACTTTTCACTAGGGTTTGGAGGATTAAATCTCTTTTGTCAC
CAGGAGATTTGGTTCATAGTAGCTAAATATCTCCTACCTCCATAATTAAA
AAAGAAAGAATATTACAAAGATCGCTAATTAATATAAAAATGATCGGCAA
ACTGCATAAAGAACAGTGACTCTAGTATCTACTTTGCCCAGCTGGCACAC
AACGTTGTTTCAACGTTCATCTAACGTTATATGGACATTGTGAACATCGG
AAAAACGTTGAAACGACGTTGTGTGCCGGCTGGGTTGATTTGATTTCACA
AAACGGTCTTACATCCTAAGAGGCCATTGGCACGAGACCAAAAGTATTCA
AGGTTTATTTCTTTTCTCTGCTTTACAAGCTTAGGAAGAATATAATCATA
ATCTAAATATTTCAAAATTTCATGCGTGACAGTTTTAATAGTATAGTAGT
GGTTTCTCCACCCTCTAACAAATACAATTTCATATTGATTAGCCTTGAGC
TAAGTACACATTGGGCTTTTCCAGAAAAAAACCGTATACCCCCTGTACAA
AAAACTGTCAAAAATAACTGGAATTCCATGGGGGTAGCCTTTTAAATCCT
ACTAAATTCAGAATTCCAGAGGGGTTTAAACCTGAAATTGCCTGGAATTC
CAGGGGGTTACAGCATTTCAAGCCACAAAATGATGGACCTCCTCAACAGG
GGGTATACGGTTTTTTTCTGGAAAAGCCCATTGTACTATTATTATACATC
AAATTTAAAGAAAAGAAACATATTTCTTATATAGTAGCTTCTAGCTAGTG
GTTTCTCCACCCCTTCAACAAATACTTCATTTCTTCCTTACAACGATAAG
GTTTGTGGTACACCGTAACACGTTGCCTTCCTGAAGAAACACATATGGAT
TTTCTCCTGGTCCAAATTCATTTTTATGTAGATGGTATGCTTTACAGTAT
TCGTTCTCTTGATTCAAAAGCGTACAATAGTCTTCTACAATGTCATAATG
ATTTGGAATTATCACAAGGATACCTTCGTTTGTTCGCTTCCTTGCTTCTT
TCACTGCTTCCTCAAACAGATCCACAAAAATAGGTTCACAACCAGCTGGG
AAATTACCAAGTGGAATTGCGATACCTTCTTTGTATGCATAATTGTTCTT
CTCCGCTACTGATTTAGTAGCTTTTGCAATTTGTTGAGAATTCCTGAAAT
TCTGTTTGAGATTAACTACGGAAAACTTTGTCCACCATTTTTCGTGATTT
CCTTTCTTTAAAGACTCAGTTGATGGGACGATCCATAAGTAGTCAACGAG
TGGCATAACCTGCTCTATGCGTTTCTTGGTAATTCGTAACCAGACGTCAC
ATTCATCAACAAATACTGCTTTGATATCACGTAATTTGATCTTTTCAATG
AGCTGAGTGAACGCTTTAGAACCCTATAAAATAAAAAAAATGGGCTGCTG
TCAATGGTAATTAAAAAAGGCAATTAATTTGACTTCCANCAATTAATAAA
AGGCAATTTTTAAAAGAGCCTTTGATTAATTTTACTTCCTTATCACCTCT
TCATCGGCCCTTAATTAACGCCGACTAGACCCTTTTACGCCGTCTCTTGT
AATCCGTCACTGACAAATGTTAAGCTTACGCCGATTATAGCCGTGAATAA
CGCCAACAAGGACCGACGCAAGAAAGGCCTTGTTTATTTTATGTTGGAGT
AATAGACAAAAGTGGTCGTTGAATAAATCTATAGGTACTACACTTGTTAA
GATACTGAAAGGCGTTGTGACCGCTATAGAAGATCTTAGGTCTACACGTT
TTTTTTTAGAACATCCAAAAATAACTTTTTCAGTTTTAAGCCTAAAAATG
TTCTTAACATGTTCTTATTTTCACCATTTTTTCACCATTTTTACCCATTT
TCCTAAGAAATCGGGTGATTTTGAGTCCATAAAGCCTTAAAATGTTCTTA
ACTTGTTCTTAACATTTTAACCGTCGAAGCCTTATGTTCTTATATAGTTT
GTTCTTATTAAAAAAACGTGTATTAATTTTGTATTTGATAAATCACTCAT
CCGANTAGCTTGTTCTTATTTAAAAAAACGTGTATTATTTTTGTATTTAA
TAAATCACTCACCCGGAAATCATAATCTTCGACAAATATTCCAAGATTTT
CTTCGAGATCAACCTTCAATCGATGGAATAGAAGGTACTTTGTTTCACCT
CTCATAGATTCGACACCACTAACAACATACATAACCTTTCCATCATATTC
AGTTTGTTTGTTCAATTGCATGGCCTTCTGGGTAAGTAAGATACTTTTAC
CCCCACCAAATGGCCCATGAATCATCACTTTCTTGTAGCGTAGATCATCG
TTGTTCATTATTGCCATCTGTTGGTTGGAGTGGAACAAAATGTTGTGGCT
GGTTGACACATTTTCGATAGCGTTGCTGGTGTATTCAACCCAAGTTGAGC
TTGTAATTGGAGGTTGATCTTTTTTCGAAACGTGAATGGCAAAGATTAGC
ATTTTCAGGAGATCTTTAGTTTCCTCCAAAGGACTTGGTATGTGCGTTGT
CTGGACTGTCTGGAATTTGTTTAAGATACTGGTCAACCAGGGTTTGATTT
CAGTTTTCATGGTGATAAAATGCTGGCTGTTGACTGTGAAGTTGTCATTT
TCAACGCCGACAACCGGAAAATATGTCCAACCAGATTTTAATTGGTCTCC
TAGTCTCTCCTCAAAGATTTGATGACTCGATTTCAACTGCTTAAAGACTT
TCTCATCGACTATTGTCCTTTTCAGCTCAACGGAGATAACGAGTTTCCTT
TGCCAAGCGATGATTATGAAATCAGTTTCTTTATGCATTTTCTTTCTCAA
GTTTGTCAAGAATGTAAGCGATGAAAGAACAACTGTATCCTGGAGAATGT
CATCTTTTAATGGTAAAAGTTGGTCATAAAACCAATGTTCAAGTTTTTCA
CCAATTTTAGATAATTCCAATCTGAAAAGCCATTGGATGTTTGAATCTTG
GCTCGGCTTATCCTCAATCATTTGCTGAACTTGTTTCCTGAGGTTATTGA
CCAAACAATTTTGCTGGAGAAGTGTTTTCAAAGGCGACGGAAAAGGTAGC
ACTGCCAGCTGGCACAAAACGTTGTTTCAACGTTTATTTAACGTTCACAA
CGTCCATATAACGTTAGATGAACGTTTAAACAACGTTGTGTGCCAGCTGG
GCTGCGATACTACAGTTGAGAAAAATTCCCAACTCCGATGTTGTTGATGG
TAGGTTTACTTGGTCAGTTTTCAGTTCTAGAATAACCACATACATAATTT
GAAGGTTTAAGATCCATCGGTCAAAAGCCTTCTTATCAATACAATCAGCA
CCATTTTGCGTAATAATAAAACTTTCCAACTCCTTTGTCAGCCAATACGT
TGGTGAATGTTGTTTCAAATTAACCAAAAGCCTTTCAATATCTTTGTCAA
TGTTATATTCTAGTAAAGCAGCCGAAGATTGTTTGTATTGGTTTGAAACA
AATATTGGTGGTATAAAAACGCTTGTATGNCAGCTGAAGATTGTTTGTAT
TGGTTTGAAACAAATGGAGGTATAAAAACGCTTGTATGTTCATTTTGAAC
GAAAAGTGAACTATCACCATATTCCCTTTCGAGAATGAAGTCGGCTGCAA
CGATTGGATTCGCTGTACAATGTGTGTTGCCCAGATTGAACTGTTTTGCT
TGTCTTTCTGACGTGGCTTGACTGTTATTGAGAATCTGCGGATACAATGA
TTTGTTTGGAGTACATTTGGTCGGATCGATTGGTTGTGCTTTCAAAGCCA
ATACATTAGCAGTAATATTAGCTAAATTTTCTTTATAAGCGATACCGGCC
ATTTTTTGTTTCTTTACTCTGCTAGTCTCTCTAAT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_039700XLOC_039700Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00063353-exon-scaffold_386-1575043694:70266..74275TCONS_00063353-exon-scaffold_386-1575043694:70266..74275Clytia hemisphaericaexon
TCONS_00063353-exon-scaffold_386-1575043694:69891..70206TCONS_00063353-exon-scaffold_386-1575043694:69891..70206Clytia hemisphaericaexon
TCONS_00063353-exon-scaffold_386-1510915933:70266..74275TCONS_00063353-exon-scaffold_386-1510915933:70266..74275Clytia hemisphaericaexon
TCONS_00063353-exon-scaffold_386-1510915933:69891..70206TCONS_00063353-exon-scaffold_386-1510915933:69891..70206Clytia hemisphaericaexon
TCONS_00063353-exon-scaffold_386-1491911889:70266..74275TCONS_00063353-exon-scaffold_386-1491911889:70266..74275Clytia hemisphaericaexon
TCONS_00063353-exon-scaffold_386-1491911889:69891..70206TCONS_00063353-exon-scaffold_386-1491911889:69891..70206Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_386supercontigscaffold_386:69891..74275 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.0527358	0.101625	0.147078	0.207413	0.0628097	0.0933361	0.565059	0.367489	0.351502	0.271431	1.04293	0.216918	1.07773	1.88606	1.98662	2.36189	1.17919	1.32351	1.24737	0.970277	1.04092	1.66465	1.164	0.908875	0.391707	0.401074	0.300399	0.0857058	1.46818	0.901702
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00063353 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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