TCONS_00063357 (transcript) - C. hemisphaerica

Overview
NameTCONS_00063357
Unique NameTCONS_00063357
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length2407

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00063357 ID=TCONS_00063357|Name=TCONS_00063357|organism=Clytia hemisphaerica|type=transcript|length=2407bp
GTCCACAATATGTGCTAGTGATTAAGTGTTTGTAAAGGTTTGGGTGTAAC
TGTCTAGACTAACCAATGTGAACTTTTTAGTTACTGTAGAAAATCATGTA
AAGAAATTAAACAAAGAAATTAATAAAGAAATTTGGAATGAAGCTCAAAA
GAAAAacgaatgagtagcttagaaGAAATCAAACAATCAACTTTTATTGA
TGAAATTGAATTACGATTCTTGAATAATAATGATATTGCAGACCTGAAAA
GGTTATGCAAGGAATGGTTCCCACTCAGGTACCCTGATGTTTGGTATCAA
CAAGTGACAAATAACCCACGTTTTTTCTCACTGGCGGCAACTTATAATGG
GGAAACTGTTGGTGTGCTCATTGCTGAAATCAGAGACCGAAACCAATGCA
ACAAGGAGGATAGCGATATGCTTAGCTATTGGTACCCCTGGTATCCTTCA
GATACAACaagaaaaagtataaaatgaTCGCATTTTTATTTAAACCTTCT
ACATTACTATTTCATGCTTTAGGATAGCGATATGCTTAGCTATTGGTACC
CCTGGTATCCTTCAGATACAAAAGTAGCGTACATCCTGATTGTTGGTGCT
GCAAAAGAATACAGGAGAAAGGGTGTTGCATCGCATCTGCTGGAGGCTTT
CTTACTGAAGGTTCAATCACCAGAAAACTACAATTGTAAATGTGTTTATC
TCCACGTGCTTGCATCTAACCTGGATGCCTTACTCTTTTACGAGAGACAG
CATTTTAAGAGACATAAacacttaccactatactataCCATCAATAATGT
AAAGATGGATGGATACTGTTACGTGTTGTATGTGAATGATGGTCAGCCAC
CTTTCTCTTTAGTTGAATTTGTGGAAGAAACAGTAGATTATTTAGCTGTA
CTCTCAGTATGTCGATTCTCAAGGTACATGTTCCGACAACTGTGGTCATT
ACCAAGAAAATTCATTGTTCATCGTGCAGCAAATACTACCAAAATGGTGT
CTACATTATAAAGGGTATTTGAATAATGAAGCTCTTGCAATTCAAATTTT
GCTCATGAAAGACAGCAAGGCGGTTCACATTatagttatgatttttttac
ttgaaaagttTTGCCTAACCATtggtaaaatatgaaaaatagcaCTATGG
AAAGTTTTTATAATGATATGGTGTGCGATATTTTGAACAACGAAATATGG
TACTGATAAATGAGAACAGAATAATGATTGTTGGTATCCATTTCAAGcgt
aaagtgaaaaaaataaaatcgcaTTATCTTCCCTTCACATATTATACTTA
AATCCAATACTTCAATGACAAATCATACACAGCCAGAGGTATTAATATAA
AGCAGTCTAACCATTATTATGTCATTAAGATGATTGAAAAATGTGTACAC
AAATGCTAGCTTAACAAATATAACATAAATGGTTACAGAAAATTCACAAC
ATTGTGTTGTGGAGGATCAAGATTAAAGAATCACTCactgttttgaaaaa
agtgatgTAAAAGTTCGTTGATTAATGATATTCTAAGATTTAGCTGATAT
ATTAAAATGTCCTagacaaaaattttaatttttactcAAGTTAGTTTTAT
ATCAATTAATGGAGATGCTTGAATATACGGTACGATTTCGATATCTGCCT
TTAGGAATTGTGCTGTTCTCCTTGcaatttccaatattttatttttagcc
ctttaaacattttcaactctactGAAATTTATCCCTTAATCTCATGGTAT
TGATTGAAATTGGGCGGATACTCAATTTCCAGAACACATCTAGATCCATT
CTTGCTTTACACTTACTACGAAGAAAATTTCTTACCCCCTCCCCTTTTGG
AGGTATCATCGTCCAATTTAAGAAGTTTGAGATCGAGCTGTGTATGtagg
gggggggtttgtaggggctcgaaataccgttttcccttcaaaatttttgt
tgaatcccagaatcccgaaaattaaaaaaaaaaataacactGTCAACTAG
Gtttgtagaggttaaaataccggcatattgacaaaaaataaggctaaata
ccgtcaccgtctgattttaaaatagcGTTTTCCCGTCTCTCTTTTCGTCA
AACCGTACTAGGGCCAATCCCGTCTCACcataaaagtacaaaccccccat
GAAATTTCTCTAGTAGTTTCTTCTAGACCACCGTTTATATAATAGTATGT
ATATAATAATATCCTTTgtaagtttttataaatattataTTAGAATTAga
tatttgtttaatttttttacctTTCTAGAGATCTAAAAAGaataccattt
tgttttttaacaaacatttttatgaaacgtttgatttttagaaaatttat
tgTTAATTTCAGGGTATCTCTTCCAATTAAATGATGATTATGTATTCTTG
ATTTATT
Run BLAST on NCBI

transcript from alignment at scaffold_386:103529..107919-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00063357 ID=TCONS_00063357|Name=TCONS_00063357|organism=Clytia hemisphaerica|type=transcript|length=4391bp|location=Sequence derived from alignment at scaffold_386:103529..107919- (Clytia hemisphaerica)
GTCCACAATATGTGCTAGTGATTAAGTGTTTGTAAAGGTTTGGGTGTAAC
TGTCTAGACTAACCAATGTGAACTTTTTAGTTACTGTAGAAAATCATGTA
AAGAAATTAAACAAAGAAATTAATAAAGAAATTTGGAATGAAGCTCAAAA
GAAAAACGAATGAGTAGCTTAGAAGAAATCAAACAATCAACTTTTATTGA
TGAAATTGAATTACGATTCTTGAATAATAATGATATTGCAGACCTGAAAA
GGTTATGCAAGGAATGGTTCCCACTCAGGTAAAAATTATTCCTTAAAAAT
TTCTGAAATAACTATATTTCTTATTTTCTTTCTGCTAAATGCCATCCTGG
GTATAAAGAATGAAGTAGATCAATAAAAAAGCTTGGGTATCCAGCCATCT
GTATTTCAGTACTAAATGGTCCTATATAAAGTAAGTAAGTCTCCGACCGC
AGTCGGAGGTGACCCGAAGGCTCATCTTTCGTCCTATATAATAGGTAAAT
CTATCTAGACATATCTACATTTCACAGCAATGTAAAAGTTGTAAATGTGC
ATCTTTACATCATCAGTTTATATTGGGTTGTCATTTATTTGTTGTATTAG
AATAACATTTTTATTGTTATTGATAAAGGTACCCTGATGTTTGGTATCAA
CAAGTGACAAATAACCCACGTTTTTTCTCACTGGCGGCAACTTATAATGG
GGAAACTGTTGGTGTGCTCATTGCTGAAATCAGAGACCGAAACCAATGCA
ACAAGGAGGTTCACTTTGTCACAATATATTTGTCTTAGCAATTCTTTCAA
ATAGATTTCTATGTTATCTTTTTGTCTTTTAAAAGGACAATAATACGGAC
TGACAGGTCTGAAAATAATGGTCTTATACTAATTATTCCTTTGTTGAAAA
AAAAACAAAAGCTAAATGTCCATTGACTTTTAGTCAATTTATAAACCTAT
TGGAATTGATCTATTAAGTTTAGCAAACAGTTTGTTTGAAGACTAAAATG
ATTGCATTTTAATTAACCCTTCTACATTACCATTTGATGCTATAGGTTAG
TGATGTGCTTGTCTTTTTGTACCCCTGGTATCCTTCAGATACAACAAGAA
AAAGTATAAAATGATCGCATTTTTATTTAAACCTTCTACATTACTATTTC
ATGCTTTAGGATAGCGATATGCTTAGCTATTGGTACCCCTGGTATCCTTC
AGATACAACAAGAAAAAGTATAAAATGATCGCATTTTTATTTAAACCTTC
TACATTACTATTTCATGCTTTAGGATAGCGATATGCTTAGCTATTGGTAC
CCCTGGTATCCTTCAGATACAAAAGTAGCGTACATCCTGATTGTTGGTGC
TGCAAAAGAATACAGGAGAAAGGGTGTTGGTATGAATACATTCTTATTGC
AATTCGCAGCTCCTGAAAAACTAAGGAATTTTTTAAAAAGATACACCCAT
TGAAGATACTCTTTATTTTGTGCTTTTCGCTTTGTCCTCCCTTTTCTTTG
TTTTTCTAACGAAATAATGGACGTATTTGGTTTTGGTTTCATTGTATATG
TTGATATTAGTAATATGGTCTTTCTGGTTTAAGGCGGGTACAATGACATC
CAACATTATTGTCAAATATTTGGCTGAAGAAAGGCTTGAAAAAAAGTGTG
CAAAATTCATACAGTTGTGTCATTTTTGAAAAAAGTCAAATATTTTAATG
TAAAATGATAAACGCAATTTCACCCAAAAAACATGAAAGTGACATCAATA
TCATTAAGATTTTGGATGAAAGCTTTAACCACCTACTCTCAGCTCCCACT
AACTTATCGCCTAGATCAGATTACCCAATCTTTAGCTAATTATTCACTGA
GTTGGTTGTGGCCAGGATCGAACCCACAACCCTTGGATTGTAAGATGAAT
GCCCTACCAACTGAGCTACCAGGCCACTTGATTTCATCCCCATTGACTTA
AGAAAAAAACCCAAAATTACAAATTTTTGAATTCATCCATCTATGAAAAT
TTCTATTAAATTCTATTGAAAAATTGCTATATAACGTGTTGATTGAATCC
TATTCATCCTCAATATTCTGTTTTAGCATCGCATCTGCTGGAGGCTTTCT
TACTGAAGGTTCAATCACCAGAAAACTACAATTGTAAATGTGTTTATCTC
CACGTGCTTGCATCTAACCTGGATGCCTTACTCTTTTACGAGAGACAGCA
TTTTAAGAGACATAAACACTTACCACTATACTATACCATCAATAATGTAA
AGATGGATGGATACTGTTACGTGTTGTATGTGAATGATGGTCAGCCACCT
TTCTCTTTAGTGTATCCTTTTCACTTCACTTTCTCAAAAAGAGCCCAATT
TGGAATTAACGATTGACCTTTTCTTAGGATTGGAATTAGGAAAGCCTCAT
TACAAAACATCATTTCAAAACATCTTTCATTAAACTTCCCTTACTGTTCC
AATTCAAATGTTTTCATTAGTTAAAAGATTCAAAAAAACTTTATTGAGCA
TTTTCATCTTAAAACTTTGCAAAGTGTGTGAATATACAAAATTATACAAG
TTTAATTGTCTGGAATGAAAAATTTACTCTCTACGTTGTGAATAGTATAG
CATTTCTTTAATGTTCTTGTTCATCTAGGCTTGTCATTTTTTACCTGCTC
TGGTAAGGTGTCCATTTATAATGCATCGGGGTATGTCCTCATCGTTTACA
CCTCAATACCATATTCCTACAAGCTTTCAGACAAACTTGTACCTAATCTT
TTGATACTTGAGAAGTAGAGTGCCTTTTGAATACTCTGTATAAGATGAAT
GGCGAATTTCAGCAATTATTTTCCTTTACGAAAAATTATTTAAACAGTGA
ATTTGTGGAAGAAACAGTAGATTATTTAGCTGTACTCTCAGTATGTCGAT
TCTCAAGGTACATGTTCCGACAACTGTGGTCATTACCAAGAAAATTCATT
GTTCATCGTGCAGCAAATACTACCAAAATGGTGTCTACATTATAAAGGGT
ATTTGAATAATGAAGCTCTTGCAATTCAAATTTTGCTCATGAAAGACAGC
AAGGCGGTTCACATTATAGTTATGATTTTTTTACTTGAAAAGTTTTGCCT
AACCATTGGTAAAATATGAAAAATAGCACTATGGAAAGTTTTTATAATGA
TATGGTGTGCGATATTTTGAACAACGAAATATGGTACTGATAAATGAGAA
CAGAATAATGATTGTTGGTATCCATTTCAAGCGTAAAGTGAAAAAAATAA
AATCGCATTATCTTCCCTTCACATATTATACTTAAATCCAATACTTCAAT
GACAAATCATACACAGCCAGAGGTATTAATATAAAGCAGTCTAACCATTA
TTATGTCATTAAGATGATTGAAAAATGTGTACACAAATGCTAGCTTAACA
AATATAACATAAATGGTTACAGAAAATTCACAACATTGTGTTGTGGAGGA
TCAAGATTAAAGAATCACTCACTGTTTTGAAAAAAGTGATGTAAAAGTTC
GTTGATTAATGATATTCTAAGATTTAGCTGATATATTAAAATGTCCTAGA
CAAAAATTTTAATTTTTACTCAAGTTAGTTTTATATCAATTAATGGAGAT
GCTTGAATATACGGTACGATTTCGATATCTGCCTTTAGGAATTGTGCTGT
TCTCCTTGCAATTTCCAATATTTTATTTTTAGCCCTTTAAACATTTTCAA
CTCTACTGAAATTTATCCCTTAATCTCATGGTATTGATTGAAATTGGGCG
GATACTCAATTTCCAGAACACATCTAGATCCATTCTTGCTTTACACTTAC
TACGAAGAAAATTTCTTACCCCCTCCCCTTTTGGAGGTATCATCGTCCAA
TTTAAGAAGTTTGAGATCGAGCTGTGTATGTAGGGGGGGGGTTTGTAGGG
GCTCGAAATACCGTTTTCCCTTCAAAATTTTTGTTGAATCCCAGAATCCC
GAAAATTAAAAAAAAAAATAACACTGTCAACTAGGTTTGTAGAGGTTAAA
ATACCGGCATATTGACAAAAAATAAGGCTAAATACCGTCACCGTCTGATT
TTAAAATAGCGTTTTCCCGTCTCTCTTTTCGTCAAACCGTACTAGGGCCA
ATCCCGTCTCACCATAAAAGTACAAACCCCCCATGAAATTTCTCTAGTAG
TTTCTTCTAGACCACCGTTTATATAATAGTATGTATATAATAATATCCTT
TGTAAGTTTTTATAAATATTATATTAGAATTAGATATTTGTTTAATTTTT
TTACCTTTCTAGAGATCTAAAAAGAATACCATTTTGTTTTTTAACAAACA
TTTTTATGAAACGTTTGATTTTTAGAAAATTTATTGTTAATTTCAGGGTA
TCTCTTCCAATTAAATGATGATTATGTATTCTTGATTTATT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_039702XLOC_039702Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00063357-exon-scaffold_386-1575043694:107642..107919TCONS_00063357-exon-scaffold_386-1575043694:107642..107919Clytia hemisphaericaexon
TCONS_00063357-exon-scaffold_386-1575043694:107162..107291TCONS_00063357-exon-scaffold_386-1575043694:107162..107291Clytia hemisphaericaexon
TCONS_00063357-exon-scaffold_386-1575043694:106541..106760TCONS_00063357-exon-scaffold_386-1575043694:106541..106760Clytia hemisphaericaexon
TCONS_00063357-exon-scaffold_386-1575043694:105609..105843TCONS_00063357-exon-scaffold_386-1575043694:105609..105843Clytia hemisphaericaexon
TCONS_00063357-exon-scaffold_386-1575043694:103529..105072TCONS_00063357-exon-scaffold_386-1575043694:103529..105072Clytia hemisphaericaexon
TCONS_00063357-exon-scaffold_386-1510915933:107642..107919TCONS_00063357-exon-scaffold_386-1510915933:107642..107919Clytia hemisphaericaexon
TCONS_00063357-exon-scaffold_386-1510915933:107162..107291TCONS_00063357-exon-scaffold_386-1510915933:107162..107291Clytia hemisphaericaexon
TCONS_00063357-exon-scaffold_386-1510915933:106541..106760TCONS_00063357-exon-scaffold_386-1510915933:106541..106760Clytia hemisphaericaexon
TCONS_00063357-exon-scaffold_386-1510915933:105609..105843TCONS_00063357-exon-scaffold_386-1510915933:105609..105843Clytia hemisphaericaexon
TCONS_00063357-exon-scaffold_386-1510915933:103529..105072TCONS_00063357-exon-scaffold_386-1510915933:103529..105072Clytia hemisphaericaexon
TCONS_00063357-exon-scaffold_386-1491911889:107642..107919TCONS_00063357-exon-scaffold_386-1491911889:107642..107919Clytia hemisphaericaexon
TCONS_00063357-exon-scaffold_386-1491911889:107162..107291TCONS_00063357-exon-scaffold_386-1491911889:107162..107291Clytia hemisphaericaexon
TCONS_00063357-exon-scaffold_386-1491911889:106541..106760TCONS_00063357-exon-scaffold_386-1491911889:106541..106760Clytia hemisphaericaexon
TCONS_00063357-exon-scaffold_386-1491911889:105609..105843TCONS_00063357-exon-scaffold_386-1491911889:105609..105843Clytia hemisphaericaexon
TCONS_00063357-exon-scaffold_386-1491911889:103529..105072TCONS_00063357-exon-scaffold_386-1491911889:103529..105072Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_386supercontigscaffold_386:103529..107919 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0	0	0	0	0.447179	0	0.879306	0	0.352389	0	0	0.960932	0.197504	0	0	1.33814	0	0	0.982072	0.946287	0	0.353376	0	0.333286	0.906811	2.54497	0.355262	0.393328
Blast
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BLAST of TCONS_00063357 vs. Swiss-Prot (Human)
Match: NAA60 (N-alpha-acetyltransferase 60 OS=Homo sapiens GN=NAA60 PE=1 SV=1)

HSP 1 Score: 199.519 bits (506), Expect = 5.169e-58
Identity = 100/266 (37.59%), Postives = 154/266 (57.89%), Query Frame = 1 
Query:  169 LEEIKQSTFIDEIELRFLNNNDIADLKRLCKEWFPLRYPDVWYQQVTNNPRFFSLAATYNGETVGVLIAEIRDRNQCNKEDSDMLSYWYPWYPSDTTRKSIK*SHFYLNLLHYYFML*DSDMLSYWYPWYPSDTKVAYILIVGAAKEYRRKGVASHLLEAFLLKVQSPENYNCKCVYLHVLASNLDALLFYERQHFKRHKHLPLYYTINNVKMDGYCYVLYVNDGQPPFSLVEFVEETVDYLAVLSVCRFSRYMFRQLWSLPRKFI 966
            + E+  S+ + E+ LR L ++DI  +K LC +WFP+ YPD WY+ +T+N +FFSLAATY G  VG+++AEI++R + +KED D+L+                 S+F +                        DT+VAYIL +G  KE+R+ G+ S LLE+    + +    +CK +YLHVL +N  A+ FYE + FK+H +LP YY+I  V  DG+ YVLY+N G PP++++++++     LA LS C     ++RQ  SL   F+
Sbjct:    1 MTEVVPSSALSEVSLRLLCHDDIDTVKHLCGDWFPIEYPDSWYRDITSNKKFFSLAATYRGAIVGMIVAEIKNRTKIHKEDGDILA-----------------SNFSV------------------------DTQVAYILSLGVVKEFRKHGIGSLLLESLKDHISTTAQDHCKAIYLHVLTTNNTAINFYENRDFKQHHYLPYYYSIRGVLKDGFTYVLYINGGHPPWTILDYIQHLGSALASLSPCSIPHRVYRQAHSLLCSFL 225
The following BLAST results are available for this feature:
BLAST of TCONS_00063357 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
NAA605.169e-5837.59N-alpha-acetyltransferase 60 OS=Homo sapiens GN=NA... [more]
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