TCONS_00063369 (transcript) - C. hemisphaerica

Overview
NameTCONS_00063369
Unique NameTCONS_00063369
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length329

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00063369 ID=TCONS_00063369|Name=TCONS_00063369|organism=Clytia hemisphaerica|type=transcript|length=329bp
AGCTCTTGTGTTGTCCATAAGAGCCATATTTCCAGCTTCGTGGACCATAA
TGGTAGGAGCTTTTGCTGTGATAGCTTTTTGCTGGGTAGTGATAGAAGGT
TGGATCTTGGCTCTCTTCGCTGTCGTAAGATTGCTTGTGGGTAAATGGCC
GATATTTCAAGCTCTTGTGTTGTCCATAAGAGCCATATTTCCAGCTTCGT
GGACCATAATGGTAGGAGCTTTTGCTGTGATAGCTTTTTGCTGGGTAGTG
ATAGAAGATTGGATCTTGGCTCTCTTCGCTGTCGTAAGATTGCTTGTGGG
TAAATGGCCGATATCTCAAGCTCTTGTGT
Run BLAST on NCBI

protein sequence of TCONS_00063369-protein

>TCONS_00063369-protein ID=TCONS_00063369-protein|Name=TCONS_00063369-protein|organism=Clytia hemisphaerica|type=polypeptide|length=109bp
TQELEISAIYPQAILRQRREPRSNLLSLPSKKLSQQKLLPLWSTKLEIWL
LWTTQELEISAIYPQAILRQRREPRSNLLSLPSKKLSQQKLLPLWSTKLE
IWLLWTTQE
Run BLAST on NCBI

transcript from alignment at scaffold_386:66396..66724

Legend: exonCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00063369 ID=TCONS_00063369|Name=TCONS_00063369|organism=Clytia hemisphaerica|type=transcript|length=329bp|location=Sequence derived from alignment at scaffold_386:66396..66724 (Clytia hemisphaerica)
ACACAAGAGCTTGAGATATCGGCCATTTACCCACAAGCAATCTTACGACA
GCGAAGAGAGCCAAGATCCAATCTTCTATCACTACCCAGCAAAAAGCTAT
CACAGCAAAAGCTCCTACCATTATGGTCCACGAAGCTGGAAATATGGCTC
TTATGGACAACACAAGAGCTTGAAATATCGGCCATTTACCCACAAGCAAT
CTTACGACAGCGAAGAGAGCCAAGATCCAACCTTCTATCACTACCCAGCA
AAAAGCTATCACAGCAAAAGCTCCTACCATTATGGTCCACGAAGCTGGAA
ATATGGCTCTTATGGACAACACAAGAGCT

Coding sequence (CDS) from alignment at scaffold_386:66396..66724

>TCONS_00063369 ID=TCONS_00063369|Name=TCONS_00063369|organism=Clytia hemisphaerica|type=CDS|length=327bp|location=Sequence derived from alignment at scaffold_386:66396..66724 (Clytia hemisphaerica)
ACACAAGAGCTTGAGATATCGGCCATTTACCCACAAGCAATCTTACGACA
GCGAAGAGAGCCAAGATCCAATCTTCTATCACTACCCAGCAAAAAGCTAT
CACAGCAAAAGCTCCTACCATTATGGTCCACGAAGCTGGAAATATGGCTC
TTATGGACAACACAAGAGCTTGAAATATCGGCCATTTACCCACAAGCAAT
CTTACGACAGCGAAGAGAGCCAAGATCCAACCTTCTATCACTACCCAGCA
AAAAGCTATCACAGCAAAAGCTCCTACCATTATGGTCCACGAAGCTGGAA
ATATGGCTCTTATGGACAACACAAGAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_039708XLOC_039708Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00063369-exon-scaffold_386-1491911889:66396..66724TCONS_00063369-exon-scaffold_386-1491911889:66396..66724Clytia hemisphaericaexon
TCONS_00063369-exon-scaffold_386-1510915933:66396..66724TCONS_00063369-exon-scaffold_386-1510915933:66396..66724Clytia hemisphaericaexon
TCONS_00063369-exon-scaffold_386-1575043694:66396..66724TCONS_00063369-exon-scaffold_386-1575043694:66396..66724Clytia hemisphaericaexon
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00063369-proteinTCONS_00063369-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_386supercontigscaffold_386:66396..66724 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0	0	0.797367	0.63009	1.52035	1.77917	0.498256	0.61717	1.19808	0.393786	0	0	0	0	0.221934	0	0	0	0.285839	0.418267	0	0	0	0	0	0	0	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00063369 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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