TCONS_00063382 (transcript) - C. hemisphaerica

Overview
NameTCONS_00063382
Unique NameTCONS_00063382
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length362

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00063382 ID=TCONS_00063382|Name=TCONS_00063382|organism=Clytia hemisphaerica|type=transcript|length=362bp
CCATGGTCTTAGCAATCTTAATGTTGGGCAGATGTTTTTTCCATAAATCA
CGAAAAGAACTAAAACCCATAGGACGAGTGTCGATTTCATTGCAAGCAGT
AAGGTAATTTTGATGAACTGATTTCTTAGTATGATGTGATGGAATTAGCT
GTATTGCACCATCTTCATCTTTATAATGAGGGACTCTGCCAGGCAGGTAA
TAAGCATTAACCTCAgcgaaatttttaagaaaactaacCACGTGCTCATT
TGTTGCTTGCGAAAAAGTGTTATGTGGTAAACGTCCCTTATTCCCATGTT
CACGAGCTACCGGGCCTTTCTCCTCAAAATGTTTACACAAAGTATTAAGA
ACTGAGGAAGAA
Run BLAST on NCBI

protein sequence of TCONS_00063382-protein

>TCONS_00063382-protein ID=TCONS_00063382-protein|Name=TCONS_00063382-protein|organism=Clytia hemisphaerica|type=polypeptide|length=120bp
SSSVLNTLCKHFEEKGPVAREHGNKGRLPHNTFSQATNEHVVSFLKNFAE
VNAYYLPGRVPHYKDEDGAIQLIPSHHTKKSVHQNYLTACNEIDTRPMGF
SSFRDLWKKHLPNIKIAKTM
Run BLAST on NCBI

transcript from alignment at scaffold_387:35124..35485

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00063382 ID=TCONS_00063382|Name=TCONS_00063382|organism=Clytia hemisphaerica|type=transcript|length=362bp|location=Sequence derived from alignment at scaffold_387:35124..35485 (Clytia hemisphaerica)
TTCTTCCTCAGTTCTTAATACTTTGTGTAAACATTTTGAGGAGAAAGGCC
CGGTAGCTCGTGAACATGGGAATAAGGGACGTTTACCACATAACACTTTT
TCGCAAGCAACAAATGAGCACGTGgttagttttcttaaaaatttcgcTGA
GGTTAATGCTTATTACCTGCCTGGCAGAGTCCCTCATTATAAAGATGAAG
ATGGTGCAATACAGCTAATTCCATCACATCATACTAAGAAATCAGTTCAT
CAAAATTACCTTACTGCTTGCAATGAAATCGACACTCGTCCTATGGGTTT
TAGTTCTTTTCGTGATTTATGGAAAAAACATCTGCCCAACATTAAGATTG
CTAAGACCATGG

Coding sequence (CDS) from alignment at scaffold_387:35124..35485

>TCONS_00063382 ID=TCONS_00063382|Name=TCONS_00063382|organism=Clytia hemisphaerica|type=CDS|length=360bp|location=Sequence derived from alignment at scaffold_387:35124..35485 (Clytia hemisphaerica)
TCTTCCTCAGTTCTTAATACTTTGTGTAAACATTTTGAGGAGAAAGGCCC
GGTAGCTCGTGAACATGGGAATAAGGGACGTTTACCACATAACACTTTTT
CGCAAGCAACAAATGAGCACGTGgttagttttcttaaaaatttcgcTGAG
GTTAATGCTTATTACCTGCCTGGCAGAGTCCCTCATTATAAAGATGAAGA
TGGTGCAATACAGCTAATTCCATCACATCATACTAAGAAATCAGTTCATC
AAAATTACCTTACTGCTTGCAATGAAATCGACACTCGTCCTATGGGTTTT
AGTTCTTTTCGTGATTTATGGAAAAAACATCTGCCCAACATTAAGATTGC
TAAGACCATG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_039716XLOC_039716Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00063382-proteinTCONS_00063382-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00063382-exon-scaffold_387-1491911889:35124..35485TCONS_00063382-exon-scaffold_387-1491911889:35124..35485Clytia hemisphaericaexon
TCONS_00063382-exon-scaffold_387-1510915933:35124..35485TCONS_00063382-exon-scaffold_387-1510915933:35124..35485Clytia hemisphaericaexon
TCONS_00063382-exon-scaffold_387-1575043694:35124..35485TCONS_00063382-exon-scaffold_387-1575043694:35124..35485Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_387supercontigscaffold_387:35124..35485 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.231881	0	0	0.256861	0.312704	0.247103	0	0.279096	0	0.726108	0	0.154431	0	0	0.526678	0.141302	0.174072	0.178418	0	0	0.224195	0	0	0	0	0	0	0	0	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00063382 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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