TCONS_00063395 (transcript) - C. hemisphaerica

Overview
NameTCONS_00063395
Unique NameTCONS_00063395
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length935

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00063395 ID=TCONS_00063395|Name=TCONS_00063395|organism=Clytia hemisphaerica|type=transcript|length=935bp
TCTTGGACGTGACCAATCTTTACATAATCTTCTAACTTCGAACTGTAGAT
TTGTTTGATTTCAGGTAATTTCTCTAATCTTCGCTCAGTAGACAGAAGTC
TGGAGACCGCAAGTGGTCGATTATTCACGAGCTCCAAATCGTCACTTTTC
CACAACATGCCCACTTCAAAATGATTGTTCACGAGTCTTGTGTTGTTCTT
TAGAAGATGTAAGGCTCTCTTCTCATCCCGAGTAAGCAAAGCTTCTGAAT
CAGGCGTTGTCGCATAGGTTTCTTGACTCCAGAATCTTTCCAGCTTCGAG
TCAAGGGATTGAACTGATATGTAATTAGAGCAACCATCATTGCTACCAGA
CTTCCCTCCGAAGATAGTCCATCCTAGCAAAGTCCTCACAGCAATTGGTT
CTTTTGAGTTTTCACCTTTAATAAATTCGAGATGCAAGAGCACTTCTCCT
TCTGGTACGTCTTGAATCTTATTAGCACATCCCTTCAATGATTACTGAAG
GATGTGCTAATAAGATTCAAGACGTACCAGAAGGAGAAGTGCTCAAATCG
CTAACATCGGATGAAAGAGCAGCTGTCACAAAAGCTGTTTNGCGCTTCTG
GTACGTCTGCACCGATTAGGATCTCAACGTCTTTATCGAGTGGTTGTGGT
AAGGAAGCATCTCTGAGATGTTGgtattgttttttcattttcgaaaCGTT
GTAGGGTTTCATCTTGATGTTTAGAGACTCGACTACCCAAGCGTCCTCTA
CATGAACGCTGGAATCACATGATGAAAGAAGAAAGTTGACTGATCTTGAT
CTCAGGGTTTGCCTTTTTGTTAGAACGTTGCTGATAGAAACTTTCAGATT
ACTGTTGATATTTGGTAATTTCAATCGATCAACAAGGCTGGCACTGATTA
ACGTGGTATCAGAACCAGGATCTAGAAGAACATTN
Run BLAST on NCBI

transcript from alignment at scaffold_388:103861..104921-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00063395 ID=TCONS_00063395|Name=TCONS_00063395|organism=Clytia hemisphaerica|type=transcript|length=1061bp|location=Sequence derived from alignment at scaffold_388:103861..104921- (Clytia hemisphaerica)
TCTTGGACGTGACCAATCTTTACATAATCTTCTAACTTCGAACTGTAGAT
TTGTTTGATTTCAGGTAATTTCTCTAATCTTCGCTCAGTAGACAGAAGTC
TGGAGACCGCAAGTGGTCGATTATTCACGAGCTCCAAATCGTCACTTTTC
CACAACATGCCCACTTCAAAATGATTGTCCACTAGTCTTGTGTTGTTCTT
TAGAAGATGTAAGGCTCTCTTCTCATCCCGAGTAAGCAAGGCTTCTGAAT
CAGGCGTTGTCGCATAGGTTTNTTTCCACAACATGCCCACTTCAAAATGA
TTGTTCACGAGTCTTGTGTTGTTCTTTAGAAGATGTAAGGCTCTCTTCTC
ATCCCGAGTAAGCAAAGCTTCTGAATCAGGCGTTGTCGCATAGGTTTCTT
GACTCCAGAATCTTTCCAGCTTCGAGTCAAGGGATTGAACTGATATGTAA
TTAGAGCAACCATCATTGCTACCAGACTTCCCTCCGAAGATAGTCCATCC
TAGCAAAGTCCTCACAGCAATTGGTTCTTTTGAGTTTTCACCTTTAATAA
ATTCGAGATGCAAGAGCACTTCTCCTTCTGGTACGTCTTGAATCTTATTA
GCACATCCCTTCAATGATTACTGAAGGATGTGCTAATAAGATTCAAGACG
TACCAGAAGGAGAAGTGCTCAAATCGCTAACATCGGATGAAAGAGCAGCT
GTCACAAAAGCTGTTTNGCGCTTCTGGTACGTCTGCACCGATTAGGATCT
CAACGTCTTTATCGAGTGGTTGTGGTAAGGAAGCATCTCTGAGATGTTGG
TATTGTTTTTTCATTTTCGAAACGTTGTAGGGTTTCATCTTGATGTTTAG
AGACTCGACTACCCAAGCGTCCTCTACATGAACGCTGGAATCACATGATG
AAAGAAGAAAGTTGACTGATCTTGATCTCAGGGTTTGCCTTTTTGTTAGA
ACGTTGCTGATAGAAACTTTCAGATTACTGTTGATATTTGGTAATTTCAA
TCGATCAACAAGGCTGGCACTGATTAACGTGGTATCAGAACCAGGATCTA
GAAGAACATTN
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_039726XLOC_039726Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00063395-exon-scaffold_388-1575043694:104766..104921TCONS_00063395-exon-scaffold_388-1575043694:104766..104921Clytia hemisphaericaexon
TCONS_00063395-exon-scaffold_388-1575043694:103861..104639TCONS_00063395-exon-scaffold_388-1575043694:103861..104639Clytia hemisphaericaexon
TCONS_00063395-exon-scaffold_388-1510915933:104766..104921TCONS_00063395-exon-scaffold_388-1510915933:104766..104921Clytia hemisphaericaexon
TCONS_00063395-exon-scaffold_388-1510915933:103861..104639TCONS_00063395-exon-scaffold_388-1510915933:103861..104639Clytia hemisphaericaexon
TCONS_00063395-exon-scaffold_388-1491911889:104766..104921TCONS_00063395-exon-scaffold_388-1491911889:104766..104921Clytia hemisphaericaexon
TCONS_00063395-exon-scaffold_388-1491911889:103861..104639TCONS_00063395-exon-scaffold_388-1491911889:103861..104639Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_388supercontigscaffold_388:103861..104921 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
2.50983	3.08159	0.774623	0	7.6115	8.63505	3.30667	5.27006	2.36941	4.70226	2.56829	2.13258	1.66834	0.320642	0.485599	0.828382	0	1.22828	0.129868	0.543589	0.677218	1.6593	0.672365	0.534868	1.80486	1.57333	1.37843	2.41352	0.813585	0.828915
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR021109Peptidase_aspartic_dom
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00063395 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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