TCONS_00063434 (transcript) - C. hemisphaerica

Overview
NameTCONS_00063434
Unique NameTCONS_00063434
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length831

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00063434 ID=TCONS_00063434|Name=TCONS_00063434|organism=Clytia hemisphaerica|type=transcript|length=831bp
GATTTGTTTAGAAATCGAGAAAATTCTTCTTAAGAAATAAGTGTTAATTC
CTGTAATTTAATAAATGTTTAAGTGGATATTTTCTAAAGATATAAGAact
attatataaaaatttattgtaaagGAAATTACAAtttattatcaaaaata
ttaacTATGATAATGCGTAGTAGAAAGCATTGATGCACAAGCTAGCTTTC
AAAATCTGGGACAAGCTCTTAATTGATTTGGTTGgccgttaacctgtaat
aaaacaattttgttttactttttctaaagaacgcgtcttCTCTATTACTT
TTAAAAGACCAATTAATGAAGTATCATTATCATACTCATGCtcatattca
aaatctgaacaGAGACACGACTTGTGggatatttattttttggaccGGTA
TATATACTATTTCAAGTAAATTCTCAAAGATAATAAAAATAATCCAGCTT
AAAAATAATGACAAGAAAAAATTCATTACACAGCTTTACTCATTATGCAT
CAGTGNGTAAGTAAATTCTCAAAGATAATAAAAATAATCCAGCTTAAAAA
TAATGACAAGAAAAAATTCATTACACAGCTTTACTCATTATGCATCAGTG
TGTTATGTTTTAGTGTTGAAgtttttaaattatttgaatGGCATTGTGGT
TATAAAAGGTCTTATTAGGATCCCctgttcattaatttttgattttttta
gctGCCAAAGAAAAGTCCCTTATTTTACTTTAAATCAACTGATGGGAAGA
GTTGATATTTACATTTTATGTGGATGCTCAGTGATTAGGGCCTTGAAACT
CTTTCAACTTTTTATGGTAGCCAACTCTCNN
Run BLAST on NCBI

transcript from alignment at scaffold_389:9836..10666

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00063434 ID=TCONS_00063434|Name=TCONS_00063434|organism=Clytia hemisphaerica|type=transcript|length=831bp|location=Sequence derived from alignment at scaffold_389:9836..10666 (Clytia hemisphaerica)
NNGAGAGTTGGCTACCATAAAAAGTTGAAAGAGTTTCAAGGCCCTAATCA
CTGAGCATCCACATAAAATGTAAATATCAACTCTTCCCATCAGTTGATTT
AAAGTAAAATAAGGGACTTTTCTTTGGCagctaaaaaaatcaaaaattaa
tgaacagGGGATCCTAATAAGACCTTTTATAACCACAATGCCattcaaat
aatttaaaaacTTCAACACTAAAACATAACACACTGATGCATAATGAGTA
AAGCTGTGTAATGAATTTTTTCTTGTCATTATTTTTAAGCTGGATTATTT
TTATTATCTTTGAGAATTTACTTACNCACTGATGCATAATGAGTAAAGCT
GTGTAATGAATTTTTTCTTGTCATTATTTTTAAGCTGGATTATTTTTATT
ATCTTTGAGAATTTACTTGAAATAGTATATATACCggtccaaaaaataaa
tatccCACAAGTCGTGTCTCtgttcagattttgaatatgaGCATGAGTAT
GATAATGATACTTCATTAATTGGTCTTTTAAAAGTAATAGAGaagacgcg
ttctttagaaaaagtaaaacaaaattgttttattacaggttaacggcCAA
CCAAATCAATTAAGAGCTTGTCCCAGATTTTGAAAGCTAGCTTGTGCATC
AATGCTTTCTACTACGCATTATCATAgttaatatttttgataataaaTTG
TAATTTCctttacaataaatttttatataatagtTCTTATATCTTTAGAA
AATATCCACTTAAACATTTATTAAATTACAGGAATTAACACTTATTTCTT
AAGAAGAATTTTCTCGATTTCTAAACAAATC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_039757XLOC_039757Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00063434-exon-scaffold_389-1491911889:9836..10666TCONS_00063434-exon-scaffold_389-1491911889:9836..10666Clytia hemisphaericaexon
TCONS_00063434-exon-scaffold_389-1510915933:9836..10666TCONS_00063434-exon-scaffold_389-1510915933:9836..10666Clytia hemisphaericaexon
TCONS_00063434-exon-scaffold_389-1575043694:9836..10666TCONS_00063434-exon-scaffold_389-1575043694:9836..10666Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_389supercontigscaffold_389:9836..10666 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.186772	0.111242	0	0	2.67461	1.63469	4.00385	4.07577	2.71034	2.35568	1.33675	3.59574	1.65268	1.21687	0.806942	0.789092	0.599457	0.78976	0.909493	1.26121	2.37661	2.44419	0.489559	0.851224	1.04107	1.50444	1.6377	1.21371	1.54946	1.29375
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00063434 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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